data_6D1
# 
_chem_comp.id                                    6D1 
_chem_comp.name                                  "5'-{[(3S)-3-amino-3-carboxypropyl](2-chloroethyl)amino}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H24 Cl N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-16 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.859 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6D1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5IS8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6D1 N1  N    N  0 1 N N N 53.837 36.350 135.447 -4.300 -3.019 -0.452 N1  6D1 1  
6D1 C1  CA   C  0 1 N N S 52.813 35.382 135.765 -5.038 -1.753 -0.543 C1  6D1 2  
6D1 C2  CB   C  0 1 N N N 52.623 34.383 134.607 -4.048 -0.587 -0.586 C2  6D1 3  
6D1 C3  CG   C  0 1 N N N 51.402 34.761 133.818 -3.286 -0.517 0.739  C3  6D1 4  
6D1 N2  NA*  N  0 1 N N N 51.527 34.486 132.414 -2.335 0.602  0.699  N2  6D1 5  
6D1 C4  CB*  C  0 1 N N N 51.716 33.015 132.225 -3.039 1.889  0.632  C4  6D1 6  
6D1 C5  CG*  C  0 1 N N N 51.680 32.541 130.719 -2.062 2.983  0.195  C5  6D1 7  
6D1 CL1 CLD* CL 0 0 N N N 51.857 30.800 130.601 -2.920 4.568  0.140  CL1 6D1 8  
6D1 C6  C5*  C  0 1 N N N 50.297 34.936 131.705 -1.423 0.560  1.850  C6  6D1 9  
6D1 C7  C4*  C  0 1 N N R 49.824 36.384 132.053 -0.376 -0.534 1.631  C7  6D1 10 
6D1 O1  O4*  O  0 1 N N N 50.534 37.354 131.238 0.408  -0.234 0.464  O1  6D1 11 
6D1 C8  C1*  C  0 1 N N R 49.547 38.141 130.523 1.747  -0.709 0.722  C8  6D1 12 
6D1 C9  C2*  C  0 1 N N R 48.286 37.297 130.479 1.984  -0.333 2.207  C9  6D1 13 
6D1 O2  O2*  O  0 1 N N N 47.109 38.057 130.507 2.967  -1.186 2.798  O2  6D1 14 
6D1 C10 C3*  C  0 1 N N S 48.372 36.513 131.742 0.587  -0.585 2.833  C10 6D1 15 
6D1 O3  O3*  O  0 1 N N N 47.748 37.175 132.843 0.544  -1.869 3.459  O3  6D1 16 
6D1 N3  N9   N  0 1 Y N N 49.700 38.502 129.128 2.712  -0.029 -0.146 N3  6D1 17 
6D1 C11 C8   C  0 1 Y N N 49.851 37.764 128.007 2.547  1.188  -0.737 C11 6D1 18 
6D1 N4  N7   N  0 1 Y N N 50.023 38.613 126.977 3.601  1.488  -1.439 N4  6D1 19 
6D1 C12 C5   C  0 1 Y N N 50.011 39.892 127.456 4.507  0.485  -1.343 C12 6D1 20 
6D1 C13 C6   C  0 1 Y N N 50.146 41.160 126.848 5.790  0.258  -1.870 C13 6D1 21 
6D1 N5  N6   N  0 1 N N N 50.348 41.212 125.405 6.392  1.193  -2.694 N5  6D1 22 
6D1 N6  N1   N  0 1 Y N N 50.090 42.270 127.596 6.411  -0.875 -1.559 N6  6D1 23 
6D1 C14 C2   C  0 1 Y N N 49.904 42.178 128.945 5.844  -1.772 -0.773 C14 6D1 24 
6D1 N7  N3   N  0 1 Y N N 49.772 40.983 129.558 4.644  -1.602 -0.258 N7  6D1 25 
6D1 C15 C4   C  0 1 Y N N 49.828 39.825 128.826 3.949  -0.498 -0.509 C15 6D1 26 
6D1 C16 C    C  0 1 N N N 53.179 34.638 137.007 -5.873 -1.747 -1.798 C16 6D1 27 
6D1 O4  OXT  O  0 1 N N N 52.345 34.522 137.932 -6.916 -0.909 -1.906 O4  6D1 28 
6D1 O5  O    O  0 1 N N N 54.321 34.120 137.097 -5.605 -2.498 -2.705 O5  6D1 29 
6D1 H1  H2   H  0 1 N N N 53.943 36.987 136.211 -4.932 -3.800 -0.357 H1  6D1 30 
6D1 H2  H    H  0 1 N N N 54.703 35.878 135.284 -3.691 -3.141 -1.247 H2  6D1 31 
6D1 H4  HA   H  0 1 N N N 51.857 35.901 135.931 -5.687 -1.646 0.326  H4  6D1 32 
6D1 H5  HB3  H  0 1 N N N 52.498 33.369 135.014 -3.342 -0.739 -1.403 H5  6D1 33 
6D1 H6  HB2  H  0 1 N N N 53.506 34.409 133.952 -4.590 0.345  -0.743 H6  6D1 34 
6D1 H7  HG3  H  0 1 N N N 51.221 35.838 133.948 -3.991 -0.365 1.556  H7  6D1 35 
6D1 H8  HG2  H  0 1 N N N 50.544 34.195 134.210 -2.743 -1.449 0.896  H8  6D1 36 
6D1 H10 HB*2 H  0 1 N N N 50.916 32.493 132.769 -3.853 1.821  -0.090 H10 6D1 37 
6D1 H11 HB*1 H  0 1 N N N 52.691 32.736 132.650 -3.443 2.134  1.614  H11 6D1 38 
6D1 H12 HG*2 H  0 1 N N N 52.502 33.024 130.171 -1.239 3.040  0.907  H12 6D1 39 
6D1 H13 HG*1 H  0 1 N N N 50.719 32.836 130.272 -1.671 2.747  -0.794 H13 6D1 40 
6D1 H14 H5*2 H  0 1 N N N 49.483 34.241 131.960 -0.925 1.524  1.954  H14 6D1 41 
6D1 H15 H5*1 H  0 1 N N N 50.492 34.892 130.623 -1.990 0.344  2.755  H15 6D1 42 
6D1 H16 H4*1 H  0 1 N N N 50.000 36.573 133.122 -0.868 -1.499 1.509  H16 6D1 43 
6D1 H17 H1*1 H  0 1 N N N 49.328 39.049 131.104 1.804  -1.789 0.585  H17 6D1 44 
6D1 H18 H2*1 H  0 1 N N N 48.315 36.625 129.609 2.272  0.714  2.302  H18 6D1 45 
6D1 H19 H2*2 H  0 1 N N N 46.357 37.478 130.477 3.151  -0.990 3.727  H19 6D1 46 
6D1 H20 H3*1 H  0 1 N N N 47.934 35.515 131.591 0.344  0.199  3.550  H20 6D1 47 
6D1 H21 H3*2 H  0 1 N N N 47.828 36.638 133.623 1.174  -1.974 4.184  H21 6D1 48 
6D1 H22 H81  H  0 1 N N N 49.836 36.686 127.948 1.671  1.812  -0.637 H22 6D1 49 
6D1 H23 H61  H  0 1 N N N 50.429 42.165 125.113 5.929  2.016  -2.914 H23 6D1 50 
6D1 H24 H62  H  0 1 N N N 51.185 40.719 125.168 7.278  1.025  -3.051 H24 6D1 51 
6D1 H25 H21  H  0 1 N N N 49.862 43.082 129.535 6.384  -2.679 -0.546 H25 6D1 52 
6D1 H26 H4   H  0 1 N N N 52.724 34.012 138.639 -7.422 -0.942 -2.729 H26 6D1 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6D1 N5  C13 SING N N 1  
6D1 C13 C12 DOUB Y N 2  
6D1 C13 N6  SING Y N 3  
6D1 N4  C12 SING Y N 4  
6D1 N4  C11 DOUB Y N 5  
6D1 C12 C15 SING Y N 6  
6D1 N6  C14 DOUB Y N 7  
6D1 C11 N3  SING Y N 8  
6D1 C15 N3  SING Y N 9  
6D1 C15 N7  DOUB Y N 10 
6D1 C14 N7  SING Y N 11 
6D1 N3  C8  SING N N 12 
6D1 C9  O2  SING N N 13 
6D1 C9  C8  SING N N 14 
6D1 C9  C10 SING N N 15 
6D1 C8  O1  SING N N 16 
6D1 CL1 C5  SING N N 17 
6D1 C5  C4  SING N N 18 
6D1 O1  C7  SING N N 19 
6D1 C6  C7  SING N N 20 
6D1 C6  N2  SING N N 21 
6D1 C10 C7  SING N N 22 
6D1 C10 O3  SING N N 23 
6D1 C4  N2  SING N N 24 
6D1 N2  C3  SING N N 25 
6D1 C3  C2  SING N N 26 
6D1 C2  C1  SING N N 27 
6D1 N1  C1  SING N N 28 
6D1 C1  C16 SING N N 29 
6D1 C16 O5  DOUB N N 30 
6D1 C16 O4  SING N N 31 
6D1 N1  H1  SING N N 32 
6D1 N1  H2  SING N N 33 
6D1 C1  H4  SING N N 34 
6D1 C2  H5  SING N N 35 
6D1 C2  H6  SING N N 36 
6D1 C3  H7  SING N N 37 
6D1 C3  H8  SING N N 38 
6D1 C4  H10 SING N N 39 
6D1 C4  H11 SING N N 40 
6D1 C5  H12 SING N N 41 
6D1 C5  H13 SING N N 42 
6D1 C6  H14 SING N N 43 
6D1 C6  H15 SING N N 44 
6D1 C7  H16 SING N N 45 
6D1 C8  H17 SING N N 46 
6D1 C9  H18 SING N N 47 
6D1 O2  H19 SING N N 48 
6D1 C10 H20 SING N N 49 
6D1 O3  H21 SING N N 50 
6D1 C11 H22 SING N N 51 
6D1 N5  H23 SING N N 52 
6D1 N5  H24 SING N N 53 
6D1 C14 H25 SING N N 54 
6D1 O4  H26 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6D1 SMILES           ACDLabs              12.01 "NC(C(=O)O)CCN(CCCl)CC1OC(C(O)C1O)n2cnc3c2ncnc3N"                                                                                                                                            
6D1 InChI            InChI                1.03  "InChI=1S/C16H24ClN7O5/c17-2-4-23(3-1-8(18)16(27)28)5-9-11(25)12(26)15(29-9)24-7-22-10-13(19)20-6-21-14(10)24/h6-9,11-12,15,25-26H,1-5,18H2,(H,27,28)(H2,19,20,21)/t8-,9+,11+,12+,15+/m0/s1" 
6D1 InChIKey         InChI                1.03  HTQOMKNFDALONB-OPYVMVOTSA-N                                                                                                                                                                  
6D1 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(CCCl)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                    
6D1 SMILES           CACTVS               3.385 "N[CH](CCN(CCCl)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                           
6D1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@@H](C(=O)O)N)CCCl)O)O)N"                                                                                                             
6D1 SMILES           "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC(C(=O)O)N)CCCl)O)O)N"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6D1 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(3S)-3-amino-3-carboxypropyl](2-chloroethyl)amino}-5'-deoxyadenosine"                                                                    
6D1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-chloroethyl)amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6D1 "Create component" 2016-03-16 EBI  
6D1 "Initial release"  2017-03-15 RCSB 
# 
