data_661
# 
_chem_comp.id                                    661 
_chem_comp.name                                  
;beta-D-glucopyranosylmethanol 3,4,6,1'-tetrakisphosphate
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H18 O18 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(2S,3S,4R,5R,6R)-3-oxidanyl-4,5-diphosphonooxy-6-(phosphonooxymethyl)oxan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-12 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.102 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
661 C2  C1  C 0 1 N N S N N N 10.517 29.559 85.789 0.191  -2.086 -0.393 C2  661 1  
661 C6  C2  C 0 1 N N N N N N 13.371 26.788 84.158 -0.257 2.154  -0.086 C6  661 2  
661 C4  C3  C 0 1 N N R N N N 12.496 28.127 86.112 1.250  0.165  -0.220 C4  661 3  
661 C3  C4  C 0 1 N N R N N N 11.869 29.454 86.474 1.396  -1.314 0.151  C3  661 4  
661 O11 O1  O 0 1 N N N N N N 13.921 25.684 87.489 4.376  2.560  0.423  O11 661 5  
661 C01 C5  C 0 1 N N N N N N 9.373  29.297 83.574 -2.306 -2.199 -0.421 C01 661 6  
661 O12 O2  O 0 1 N N N N N N 16.073 26.984 87.245 2.638  2.704  -1.402 O12 661 7  
661 O04 O3  O 0 1 N N N N N N 8.199  31.103 81.277 -5.096 -3.793 0.240  O04 661 8  
661 O08 O4  O 0 1 N N N N N N 11.683 29.528 87.899 2.596  -1.835 -0.423 O08 661 9  
661 O03 O5  O 0 1 N N N N N N 7.191  28.805 81.653 -6.079 -1.379 0.587  O03 661 10 
661 P4  P1  P 0 1 N N N N N N 14.645 26.987 87.744 3.377  1.750  -0.545 P4  661 11 
661 O01 O6  O 0 1 N N N N N N 9.620  29.251 82.164 -3.500 -1.704 0.188  O01 661 12 
661 O05 O7  O 0 1 N N N N N N 11.342 30.152 90.331 5.028  -2.831 -0.500 O05 661 13 
661 O06 O8  O 0 1 N N N N N N 10.787 31.747 88.448 4.220  -1.489 1.479  O06 661 14 
661 O10 O9  O 0 1 N N N N N N 14.517 27.478 89.170 4.227  0.743  -1.471 O10 661 15 
661 O02 O10 O 0 1 N N N N N N 8.884  29.163 79.812 -5.179 -2.122 -1.650 O02 661 16 
661 P1  P2  P 0 1 N N N N N N 8.387  29.605 81.173 -4.968 -2.247 -0.191 P1  661 17 
661 O09 O11 O 0 1 N N N N N N 13.755 27.948 86.783 2.333  0.908  0.345  O09 661 18 
661 O07 O12 O 0 1 N N N N N N 13.199 31.204 88.979 3.262  -3.805 1.186  O07 661 19 
661 P3  P3  P 0 1 N N N N N N 11.764 30.728 88.997 3.786  -2.469 0.458  P3  661 20 
661 C1  C6  C 0 1 N N S N N N 10.694 29.345 84.286 -1.095 -1.471 0.166  C1  661 21 
661 C5  C7  C 0 1 N N R N N N 12.670 28.048 84.610 -0.076 0.694  0.332  C5  661 22 
661 O2  O13 O 0 1 N N N N N N 9.963  30.843 86.053 0.279  -3.455 0.009  O2  661 23 
661 O5  O14 O 0 1 N N N N N N 11.353 28.089 84.024 -1.153 -0.088 -0.189 O5  661 24 
661 O6  O15 O 0 1 N N N N N N 13.311 26.723 82.722 -1.436 2.682  0.525  O6  661 25 
661 P6  P4  P 0 1 N N N N N N 14.587 27.216 81.841 -1.935 4.197  0.305  P6  661 26 
661 O16 O16 O 0 1 N N N N N N 14.811 28.671 82.190 -0.856 5.214  0.933  O16 661 27 
661 O17 O17 O 0 1 N N N N N N 14.120 26.996 80.414 -2.078 4.463  -1.143 O17 661 28 
661 O18 O18 O 0 1 N N N N N N 15.750 26.321 82.230 -3.356 4.405  1.033  O18 661 29 
661 H1  H1  H 0 1 N N N N N N 9.857  28.772 86.183 0.181  -2.027 -1.482 H1  661 30 
661 H2  H2  H 0 1 N N N N N N 12.870 25.909 84.591 0.609  2.734  0.235  H2  661 31 
661 H3  H3  H 0 1 N N N N N N 14.421 26.810 84.485 -0.352 2.213  -1.170 H3  661 32 
661 H4  H4  H 0 1 N N N N N N 11.807 27.327 86.419 1.263  0.271  -1.305 H4  661 33 
661 H5  H5  H 0 1 N N N N N N 12.518 30.272 86.128 1.435  -1.416 1.236  H5  661 34 
661 H6  H6  H 0 1 N N N N N N 14.505 25.077 87.049 5.034  3.091  -0.046 H6  661 35 
661 H7  H7  H 0 1 N N N N N N 8.786  30.195 83.819 -2.216 -3.268 -0.227 H7  661 36 
661 H8  H8  H 0 1 N N N N N N 8.817  28.400 83.883 -2.348 -2.027 -1.496 H8  661 37 
661 H9  H9  H 0 1 N N N N N N 8.432  31.510 80.451 -4.969 -3.949 1.186  H9  661 38 
661 H10 H10 H 0 1 N N N N N N 6.962  28.155 81.000 -6.989 -1.651 0.406  H10 661 39 
661 H11 H11 H 0 1 N N N N N N 10.517 30.540 90.597 5.783  -3.218 -0.036 H11 661 40 
661 H12 H12 H 0 1 N N N N N N 15.377 27.702 89.506 4.737  0.089  -0.975 H12 661 41 
661 H13 H13 H 0 1 N N N N N N 13.238 32.082 88.617 2.960  -4.493 0.576  H13 661 42 
661 H14 H14 H 0 1 N N N N N N 11.292 30.174 83.879 -1.103 -1.569 1.251  H14 661 43 
661 H15 H15 H 0 1 N N N N N N 13.253 28.918 84.275 -0.070 0.625  1.420  H15 661 44 
661 H16 H16 H 0 1 N N N N N N 10.262 31.149 86.901 -0.454 -4.004 -0.301 H16 661 45 
661 H17 H17 H 0 1 N N N N N N 14.615 29.212 81.434 -0.711 5.096  1.882  H17 661 46 
661 H18 H18 H 0 1 N N N N N N 15.985 25.769 81.494 -3.717 5.297  0.941  H18 661 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
661 O02 P1  DOUB N N 1  
661 O17 P6  DOUB N N 2  
661 P1  O04 SING N N 3  
661 P1  O03 SING N N 4  
661 P1  O01 SING N N 5  
661 P6  O16 SING N N 6  
661 P6  O18 SING N N 7  
661 P6  O6  SING N N 8  
661 O01 C01 SING N N 9  
661 O6  C6  SING N N 10 
661 C01 C1  SING N N 11 
661 O5  C1  SING N N 12 
661 O5  C5  SING N N 13 
661 C6  C5  SING N N 14 
661 C1  C2  SING N N 15 
661 C5  C4  SING N N 16 
661 C2  O2  SING N N 17 
661 C2  C3  SING N N 18 
661 C4  C3  SING N N 19 
661 C4  O09 SING N N 20 
661 C3  O08 SING N N 21 
661 O09 P4  SING N N 22 
661 O12 P4  DOUB N N 23 
661 O11 P4  SING N N 24 
661 P4  O10 SING N N 25 
661 O08 P3  SING N N 26 
661 O06 P3  DOUB N N 27 
661 O07 P3  SING N N 28 
661 P3  O05 SING N N 29 
661 C2  H1  SING N N 30 
661 C6  H2  SING N N 31 
661 C6  H3  SING N N 32 
661 C4  H4  SING N N 33 
661 C3  H5  SING N N 34 
661 O11 H6  SING N N 35 
661 C01 H7  SING N N 36 
661 C01 H8  SING N N 37 
661 O04 H9  SING N N 38 
661 O03 H10 SING N N 39 
661 O05 H11 SING N N 40 
661 O10 H12 SING N N 41 
661 O07 H13 SING N N 42 
661 C1  H14 SING N N 43 
661 C5  H15 SING N N 44 
661 O2  H16 SING N N 45 
661 O16 H17 SING N N 46 
661 O18 H18 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
661 InChI            InChI                1.06  "InChI=1S/C7H18O18P4/c8-5-3(1-21-26(9,10)11)23-4(2-22-27(12,13)14)6(24-28(15,16)17)7(5)25-29(18,19)20/h3-8H,1-2H2,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)(H2,18,19,20)/t3-,4+,5-,6+,7+/m0/s1" 
661 InChIKey         InChI                1.06  MPSXELYGZWCBKU-PJEQPVAWSA-N                                                                                                                                                                  
661 SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@H](CO[P](O)(O)=O)O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O"                                                                                                    
661 SMILES           CACTVS               3.385 "O[CH]1[CH](CO[P](O)(O)=O)O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"                                                                                                           
661 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)COP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O"                                                                                                        
661 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)COP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           661 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-4,5-diphosphonooxy-6-(phosphonooxymethyl)oxan-2-yl]methyl dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      661 
_pdbx_chem_comp_synonyms.name         "[(2S,3S,4R,5R,6R)-3-oxidanyl-4,5-diphosphonooxy-6-(phosphonooxymethyl)oxan-2-yl]methyl dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
661 "Create component" 2023-07-12 PDBE 
661 "Initial release"  2024-02-28 RCSB 
# 
