data_5Y1
# 
_chem_comp.id                                    5Y1 
_chem_comp.name                                  "(5R)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2,6(28),11(27),12,14,22,24-octaene-4,7-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-27 
_chem_comp.pdbx_modified_date                    2022-07-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        421.446 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5Y1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RKP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5Y1 C6  C1  C 0 1 Y N N 10.523 40.192 -11.416 -4.849 -0.210 -0.111 C6  5Y1 1  
5Y1 C4  C2  C 0 1 Y N N 12.628 41.245 -11.898 -3.828 1.900  0.394  C4  5Y1 2  
5Y1 C3  C3  C 0 1 N N N 13.453 42.231 -12.722 -2.642 2.687  0.891  C3  5Y1 3  
5Y1 C2  C4  C 0 1 N N N 13.226 41.931 -14.201 -1.658 2.913  -0.257 C2  5Y1 4  
5Y1 C1  C5  C 0 1 N N N 14.900 42.061 -16.170 0.743  2.738  -0.249 C1  5Y1 5  
5Y1 C10 C6  C 0 1 N N N 14.733 40.624 -16.688 2.009  1.964  -0.200 C10 5Y1 6  
5Y1 C11 C7  C 0 1 N N N 13.753 38.515 -16.635 3.162  -0.050 -0.078 C11 5Y1 7  
5Y1 C12 C8  C 0 1 Y N N 12.758 37.559 -15.982 3.043  -1.522 -0.067 C12 5Y1 8  
5Y1 C13 C9  C 0 1 Y N N 13.225 36.432 -15.327 4.190  -2.323 -0.084 C13 5Y1 9  
5Y1 C14 C10 C 0 1 Y N N 12.330 35.559 -14.725 4.069  -3.696 -0.081 C14 5Y1 10 
5Y1 C15 C11 C 0 1 Y N N 10.968 35.823 -14.777 2.817  -4.287 -0.055 C15 5Y1 11 
5Y1 C16 C12 C 0 1 Y N N 10.502 36.954 -15.427 1.674  -3.500 -0.029 C16 5Y1 12 
5Y1 C17 C13 C 0 1 N N N 8.772  38.547 -15.655 -0.677 -3.193 -0.011 C17 5Y1 13 
5Y1 C18 C14 C 0 1 N N N 7.531  38.864 -14.823 -1.934 -3.937 0.443  C18 5Y1 14 
5Y1 C19 C15 C 0 1 N N N 7.905  39.840 -13.710 -3.156 -3.349 -0.268 C19 5Y1 15 
5Y1 C20 C16 C 0 1 N N N 8.886  39.171 -12.748 -3.717 -2.191 0.558  C20 5Y1 16 
5Y1 C21 C17 C 0 1 Y N N 11.399 37.822 -16.028 1.781  -2.120 -0.038 C21 5Y1 17 
5Y1 C22 C18 C 0 1 N N R 15.492 40.217 -17.737 3.352  2.672  -0.229 C22 5Y1 18 
5Y1 C23 C19 C 0 1 N N N 15.373 38.956 -18.223 4.577  1.789  -0.083 C23 5Y1 19 
5Y1 C5  C20 C 0 1 Y N N 11.276 41.089 -12.161 -3.761 0.520  0.345  C5  5Y1 20 
5Y1 C7  C21 C 0 1 Y N N 11.127 39.452 -10.408 -6.002 0.447  -0.517 C7  5Y1 21 
5Y1 C8  C22 C 0 1 Y N N 12.479 39.610 -10.148 -6.067 1.827  -0.467 C8  5Y1 22 
5Y1 C9  C23 C 0 1 Y N N 13.226 40.505 -10.894 -4.978 2.550  -0.016 C9  5Y1 23 
5Y1 N1  N1  N 0 1 N N N 14.199 42.632 -15.022 -0.441 2.105  -0.022 N1  5Y1 24 
5Y1 N2  N2  N 0 1 N N N 13.878 39.770 -16.154 2.016  0.663  -0.124 N2  5Y1 25 
5Y1 N3  N3  N 0 1 N N N 14.514 38.113 -17.677 4.370  0.465  -0.043 N3  5Y1 26 
5Y1 O1  O1  O 0 1 N N N 15.666 42.763 -16.739 0.764  3.928  -0.490 O1  5Y1 27 
5Y1 O2  O2  O 0 1 N N N 9.125  37.205 -15.470 0.444  -4.080 0.009  O2  5Y1 28 
5Y1 O3  O3  O 0 1 N N N 9.158  40.033 -11.680 -4.789 -1.568 -0.153 O3  5Y1 29 
5Y1 O4  O4  O 0 1 N N N 16.405 41.105 -18.322 3.371  3.634  0.828  O4  5Y1 30 
5Y1 O5  O5  O 0 1 N N N 16.042 38.610 -19.139 5.694  2.259  -0.007 O5  5Y1 31 
5Y1 H1  H1  H 0 1 N N N 14.520 42.117 -12.479 -2.980 3.649  1.275  H1  5Y1 32 
5Y1 H2  H2  H 0 1 N N N 13.134 43.260 -12.498 -2.147 2.132  1.688  H2  5Y1 33 
5Y1 H3  H3  H 0 1 N N N 12.214 42.255 -14.484 -2.119 2.612  -1.197 H3  5Y1 34 
5Y1 H4  H4  H 0 1 N N N 13.325 40.848 -14.369 -1.391 3.969  -0.304 H4  5Y1 35 
5Y1 H5  H5  H 0 1 N N N 14.286 36.232 -15.285 5.168  -1.866 -0.099 H5  5Y1 36 
5Y1 H6  H6  H 0 1 N N N 12.692 34.677 -14.218 4.955  -4.314 -0.100 H6  5Y1 37 
5Y1 H7  H7  H 0 1 N N N 10.270 35.145 -14.309 2.730  -5.363 -0.055 H7  5Y1 38 
5Y1 H8  H8  H 0 1 N N N 9.603  39.193 -15.335 -0.824 -2.817 -1.023 H8  5Y1 39 
5Y1 H9  H9  H 0 1 N N N 8.557  38.727 -16.719 -0.488 -2.356 0.661  H9  5Y1 40 
5Y1 H10 H10 H 0 1 N N N 6.763  39.318 -15.467 -1.841 -4.994 0.194  H10 5Y1 41 
5Y1 H11 H11 H 0 1 N N N 7.138  37.936 -14.381 -2.053 -3.826 1.521  H11 5Y1 42 
5Y1 H12 H12 H 0 1 N N N 8.374  40.733 -14.149 -2.863 -2.985 -1.253 H12 5Y1 43 
5Y1 H13 H13 H 0 1 N N N 6.998  40.134 -13.162 -3.918 -4.121 -0.378 H13 5Y1 44 
5Y1 H14 H14 H 0 1 N N N 8.444  38.240 -12.364 -4.086 -2.570 1.511  H14 5Y1 45 
5Y1 H15 H15 H 0 1 N N N 9.821  38.941 -13.280 -2.930 -1.459 0.740  H15 5Y1 46 
5Y1 H16 H16 H 0 1 N N N 11.038 38.705 -16.533 0.892  -1.508 -0.022 H16 5Y1 47 
5Y1 H17 H17 H 0 1 N N N 14.713 40.559 -18.434 3.432  3.209  -1.174 H17 5Y1 48 
5Y1 H18 H18 H 0 1 N N N 10.808 41.665 -12.946 -2.863 0.011  0.663  H18 5Y1 49 
5Y1 H19 H19 H 0 1 N N N 10.543 38.754 -9.827  -6.849 -0.120 -0.872 H19 5Y1 50 
5Y1 H20 H20 H 0 1 N N N 12.949 39.035 -9.364  -6.965 2.338  -0.781 H20 5Y1 51 
5Y1 H21 H21 H 0 1 N N N 14.280 40.626 -10.691 -5.026 3.629  0.017  H21 5Y1 52 
5Y1 H22 H22 H 0 1 N N N 14.405 43.581 -14.782 -0.484 1.182  0.275  H22 5Y1 53 
5Y1 H23 H23 H 0 1 N N N 16.359 41.944 -17.880 4.194  4.137  0.887  H23 5Y1 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5Y1 O5  C23 DOUB N N 1  
5Y1 O4  C22 SING N N 2  
5Y1 C23 C22 SING N N 3  
5Y1 C23 N3  SING N N 4  
5Y1 C22 C10 SING N N 5  
5Y1 N3  C11 DOUB N N 6  
5Y1 O1  C1  DOUB N N 7  
5Y1 C10 C1  SING N N 8  
5Y1 C10 N2  DOUB N N 9  
5Y1 C11 N2  SING N N 10 
5Y1 C11 C12 SING N N 11 
5Y1 C1  N1  SING N N 12 
5Y1 C21 C12 DOUB Y N 13 
5Y1 C21 C16 SING Y N 14 
5Y1 C12 C13 SING Y N 15 
5Y1 C17 O2  SING N N 16 
5Y1 C17 C18 SING N N 17 
5Y1 O2  C16 SING N N 18 
5Y1 C16 C15 DOUB Y N 19 
5Y1 C13 C14 DOUB Y N 20 
5Y1 N1  C2  SING N N 21 
5Y1 C18 C19 SING N N 22 
5Y1 C15 C14 SING Y N 23 
5Y1 C2  C3  SING N N 24 
5Y1 C19 C20 SING N N 25 
5Y1 C20 O3  SING N N 26 
5Y1 C3  C4  SING N N 27 
5Y1 C5  C4  DOUB Y N 28 
5Y1 C5  C6  SING Y N 29 
5Y1 C4  C9  SING Y N 30 
5Y1 O3  C6  SING N N 31 
5Y1 C6  C7  DOUB Y N 32 
5Y1 C9  C8  DOUB Y N 33 
5Y1 C7  C8  SING Y N 34 
5Y1 C3  H1  SING N N 35 
5Y1 C3  H2  SING N N 36 
5Y1 C2  H3  SING N N 37 
5Y1 C2  H4  SING N N 38 
5Y1 C13 H5  SING N N 39 
5Y1 C14 H6  SING N N 40 
5Y1 C15 H7  SING N N 41 
5Y1 C17 H8  SING N N 42 
5Y1 C17 H9  SING N N 43 
5Y1 C18 H10 SING N N 44 
5Y1 C18 H11 SING N N 45 
5Y1 C19 H12 SING N N 46 
5Y1 C19 H13 SING N N 47 
5Y1 C20 H14 SING N N 48 
5Y1 C20 H15 SING N N 49 
5Y1 C21 H16 SING N N 50 
5Y1 C22 H17 SING N N 51 
5Y1 C5  H18 SING N N 52 
5Y1 C7  H19 SING N N 53 
5Y1 C8  H20 SING N N 54 
5Y1 C9  H21 SING N N 55 
5Y1 N1  H22 SING N N 56 
5Y1 O4  H23 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5Y1 SMILES           ACDLabs              12.01 "O=C1NCCc2cc(ccc2)OCCCCOc2cccc(c2)C=2N=C1C(O)C(=O)N=2"                                                                                                        
5Y1 InChI            InChI                1.03  "InChI=1S/C23H23N3O5/c27-20-19-22(28)24-10-9-15-5-3-7-17(13-15)30-11-1-2-12-31-18-8-4-6-16(14-18)21(25-19)26-23(20)29/h3-8,13-14,20,27H,1-2,9-12H2,(H,24,28)" 
5Y1 InChIKey         InChI                1.03  HUEWTLLMWLXBIR-UHFFFAOYSA-N                                                                                                                                   
5Y1 SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C(=O)N=C2N=C1C(=O)NCCc3cccc(OCCCCOc4cccc2c4)c3"                                                                                                       
5Y1 SMILES           CACTVS               3.385 "O[CH]1C(=O)N=C2N=C1C(=O)NCCc3cccc(OCCCCOc4cccc2c4)c3"                                                                                                        
5Y1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCCOc3cccc(c3)C4=NC(=O)C(C(=N4)C(=O)NCC2)O"                                                                                                     
5Y1 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCCOc3cccc(c3)C4=NC(=O)C(C(=N4)C(=O)NCC2)O"                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           5Y1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(5R)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2,6(28),11(27),12,14,22,24-octaene-4,7-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5Y1 "Create component" 2021-07-27 RCSB 
5Y1 "Initial release"  2022-07-27 RCSB 
# 
