data_5N1
# 
_chem_comp.id                                    5N1 
_chem_comp.name                                  "6-ethyl-5-[(3~{S})-3-(6-pyridin-4-yl-1,3-benzodioxol-4-yl)but-1-ynyl]pyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H21 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-26 
_chem_comp.pdbx_modified_date                    2016-05-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        387.434 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5N1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ECX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5N1 C4  C1  C 0 1 Y N N 32.602 -37.610 -0.801 -3.195 -0.692 0.863  C4  5N1 1  
5N1 C5  C2  C 0 1 Y N N 33.741 -37.750 -1.585 -3.222 0.347  -0.069 C5  5N1 2  
5N1 C6  C3  C 0 1 Y N N 34.779 -36.847 -1.398 -4.470 0.748  -0.585 C6  5N1 3  
5N1 N1  N1  N 0 1 Y N N 34.679 -35.872 -0.486 -5.566 0.124  -0.168 N1  5N1 4  
5N1 N3  N2  N 0 1 Y N N 32.544 -36.618 0.101  -4.334 -1.260 1.225  N3  5N1 5  
5N1 CBC C4  C 0 1 N N N 30.333 -37.731 -1.533 -1.312 -2.277 0.564  CBC 5N1 6  
5N1 CBB C5  C 0 1 N N N 31.526 -38.482 -0.940 -1.888 -1.164 1.443  CBB 5N1 7  
5N1 C2  C6  C 0 1 Y N N 33.567 -35.761 0.257  -5.491 -0.858 0.718  C2  5N1 8  
5N1 NBA N3  N 0 1 N N N 33.477 -34.790 1.161  -6.655 -1.482 1.128  NBA 5N1 9  
5N1 NAZ N4  N 0 1 N N N 35.858 -37.001 -2.161 -4.553 1.772  -1.510 NAZ 5N1 10 
5N1 CAG C7  C 0 1 N N N 33.848 -38.802 -2.569 -2.012 0.990  -0.488 CAG 5N1 11 
5N1 CAH C8  C 0 1 N N N 33.939 -39.694 -3.404 -1.021 1.516  -0.831 CAH 5N1 12 
5N1 CAI C9  C 0 1 N N S 34.049 -40.764 -4.404 0.222  2.177  -1.262 CAI 5N1 13 
5N1 CAJ C10 C 0 1 N N N 34.603 -40.188 -5.709 0.391  2.010  -2.773 CAJ 5N1 14 
5N1 CAK C11 C 0 1 Y N N 32.793 -41.313 -4.636 1.395  1.550  -0.553 CAK 5N1 15 
5N1 CAL C12 C 0 1 Y N N 31.759 -40.494 -5.066 1.661  0.207  -0.719 CAL 5N1 16 
5N1 CAP C13 C 0 1 Y N N 32.604 -42.619 -4.442 2.208  2.328  0.259  CAP 5N1 17 
5N1 OAW O1  O 0 1 N N N 33.504 -43.548 -4.027 2.162  3.654  0.576  OAW 5N1 18 
5N1 CAX C14 C 0 1 N N N 32.693 -44.696 -3.692 3.464  3.969  1.104  CAX 5N1 19 
5N1 OAY O2  O 0 1 N N N 31.445 -44.509 -4.397 3.927  2.717  1.643  OAY 5N1 20 
5N1 CAO C15 C 0 1 Y N N 31.412 -43.176 -4.655 3.294  1.751  0.915  CAO 5N1 21 
5N1 CAN C16 C 0 1 Y N N 30.383 -42.437 -5.069 3.561  0.403  0.756  CAN 5N1 22 
5N1 CAM C17 C 0 1 Y N N 30.523 -41.075 -5.287 2.749  -0.374 -0.068 CAM 5N1 23 
5N1 CAQ C18 C 0 1 Y N N 29.446 -40.310 -5.718 3.032  -1.819 -0.241 CAQ 5N1 24 
5N1 CAR C19 C 0 1 Y N N 29.476 -38.927 -5.576 4.109  -2.423 0.414  CAR 5N1 25 
5N1 CAS C20 C 0 1 Y N N 28.401 -38.158 -6.006 4.337  -3.771 0.226  CAS 5N1 26 
5N1 NAT N5  N 0 1 Y N N 27.286 -38.777 -6.582 3.555  -4.486 -0.559 NAT 5N1 27 
5N1 CAU C21 C 0 1 Y N N 27.260 -40.170 -6.722 2.529  -3.955 -1.196 CAU 5N1 28 
5N1 CAV C22 C 0 1 Y N N 28.340 -40.930 -6.290 2.226  -2.616 -1.059 CAV 5N1 29 
5N1 H1  H1  H 0 1 N N N 29.483 -38.420 -1.643 -2.014 -3.109 0.525  H1  5N1 30 
5N1 H2  H2  H 0 1 N N N 30.051 -36.905 -0.864 -1.145 -1.895 -0.443 H2  5N1 31 
5N1 H3  H3  H 0 1 N N N 30.607 -37.327 -2.519 -0.366 -2.618 0.984  H3  5N1 32 
5N1 H4  H4  H 0 1 N N N 31.252 -38.886 0.046  -1.185 -0.332 1.482  H4  5N1 33 
5N1 H5  H5  H 0 1 N N N 31.808 -39.308 -1.609 -2.054 -1.546 2.450  H5  5N1 34 
5N1 H6  H6  H 0 1 N N N 34.316 -34.246 1.151  -7.510 -1.199 0.767  H6  5N1 35 
5N1 H7  H7  H 0 1 N N N 32.697 -34.203 0.943  -6.617 -2.202 1.776  H7  5N1 36 
5N1 H8  H8  H 0 1 N N N 36.530 -36.296 -1.935 -3.747 2.222  -1.809 H8  5N1 37 
5N1 H9  H9  H 0 1 N N N 36.255 -37.904 -1.998 -5.417 2.041  -1.860 H9  5N1 38 
5N1 H10 H10 H 0 1 N N N 34.744 -41.534 -4.039 0.174  3.238  -1.017 H10 5N1 39 
5N1 H11 H11 H 0 1 N N N 35.597 -39.753 -5.526 0.439  0.949  -3.019 H11 5N1 40 
5N1 H12 H12 H 0 1 N N N 34.686 -40.990 -6.458 -0.458 2.463  -3.286 H12 5N1 41 
5N1 H13 H13 H 0 1 N N N 33.924 -39.407 -6.082 1.311  2.499  -3.092 H13 5N1 42 
5N1 H14 H14 H 0 1 N N N 31.914 -39.437 -5.223 1.026  -0.395 -1.352 H14 5N1 43 
5N1 H15 H15 H 0 1 N N N 32.518 -44.739 -2.607 4.126  4.312  0.309  H15 5N1 44 
5N1 H16 H16 H 0 1 N N N 33.185 -45.623 -4.021 3.387  4.722  1.889  H16 5N1 45 
5N1 H17 H17 H 0 1 N N N 29.425 -42.907 -5.237 4.402  -0.045 1.264  H17 5N1 46 
5N1 H18 H18 H 0 1 N N N 30.336 -38.449 -5.131 4.754  -1.843 1.058  H18 5N1 47 
5N1 H19 H19 H 0 1 N N N 28.426 -37.084 -5.896 5.167  -4.246 0.728  H19 5N1 48 
5N1 H20 H20 H 0 1 N N N 26.402 -40.653 -7.165 1.914  -4.578 -1.829 H20 5N1 49 
5N1 H21 H21 H 0 1 N N N 28.321 -42.004 -6.399 1.384  -2.189 -1.582 H21 5N1 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5N1 CAU NAT DOUB Y N 1  
5N1 CAU CAV SING Y N 2  
5N1 NAT CAS SING Y N 3  
5N1 CAV CAQ DOUB Y N 4  
5N1 CAS CAR DOUB Y N 5  
5N1 CAQ CAR SING Y N 6  
5N1 CAQ CAM SING N N 7  
5N1 CAJ CAI SING N N 8  
5N1 CAM CAN DOUB Y N 9  
5N1 CAM CAL SING Y N 10 
5N1 CAN CAO SING Y N 11 
5N1 CAL CAK DOUB Y N 12 
5N1 CAO CAP DOUB Y N 13 
5N1 CAO OAY SING N N 14 
5N1 CAK CAP SING Y N 15 
5N1 CAK CAI SING N N 16 
5N1 CAP OAW SING N N 17 
5N1 CAI CAH SING N N 18 
5N1 OAY CAX SING N N 19 
5N1 OAW CAX SING N N 20 
5N1 CAH CAG TRIP N N 21 
5N1 CAG C5  SING N N 22 
5N1 NAZ C6  SING N N 23 
5N1 C5  C6  DOUB Y N 24 
5N1 C5  C4  SING Y N 25 
5N1 CBC CBB SING N N 26 
5N1 C6  N1  SING Y N 27 
5N1 CBB C4  SING N N 28 
5N1 C4  N3  DOUB Y N 29 
5N1 N1  C2  DOUB Y N 30 
5N1 N3  C2  SING Y N 31 
5N1 C2  NBA SING N N 32 
5N1 CBC H1  SING N N 33 
5N1 CBC H2  SING N N 34 
5N1 CBC H3  SING N N 35 
5N1 CBB H4  SING N N 36 
5N1 CBB H5  SING N N 37 
5N1 NBA H6  SING N N 38 
5N1 NBA H7  SING N N 39 
5N1 NAZ H8  SING N N 40 
5N1 NAZ H9  SING N N 41 
5N1 CAI H10 SING N N 42 
5N1 CAJ H11 SING N N 43 
5N1 CAJ H12 SING N N 44 
5N1 CAJ H13 SING N N 45 
5N1 CAL H14 SING N N 46 
5N1 CAX H15 SING N N 47 
5N1 CAX H16 SING N N 48 
5N1 CAN H17 SING N N 49 
5N1 CAR H18 SING N N 50 
5N1 CAS H19 SING N N 51 
5N1 CAU H20 SING N N 52 
5N1 CAV H21 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5N1 InChI            InChI                1.03  "InChI=1S/C22H21N5O2/c1-3-18-16(21(23)27-22(24)26-18)5-4-13(2)17-10-15(14-6-8-25-9-7-14)11-19-20(17)29-12-28-19/h6-11,13H,3,12H2,1-2H3,(H4,23,24,26,27)/t13-/m0/s1" 
5N1 InChIKey         InChI                1.03  NRVDPWMGAWNSHR-ZDUSSCGKSA-N                                                                                                                                         
5N1 SMILES_CANONICAL CACTVS               3.385 "CCc1nc(N)nc(N)c1C#C[C@H](C)c2cc(cc3OCOc23)c4ccncc4"                                                                                                                
5N1 SMILES           CACTVS               3.385 "CCc1nc(N)nc(N)c1C#C[CH](C)c2cc(cc3OCOc23)c4ccncc4"                                                                                                                 
5N1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCc1c(c(nc(n1)N)N)C#C[C@H](C)c2cc(cc3c2OCO3)c4ccncc4"                                                                                                              
5N1 SMILES           "OpenEye OEToolkits" 2.0.4 "CCc1c(c(nc(n1)N)N)C#CC(C)c2cc(cc3c2OCO3)c4ccncc4"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5N1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "6-ethyl-5-[(3~{S})-3-(6-pyridin-4-yl-1,3-benzodioxol-4-yl)but-1-ynyl]pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5N1 "Create component" 2015-10-26 RCSB 
5N1 "Initial release"  2016-05-18 RCSB 
# 
