data_5L1
# 
_chem_comp.id                                    5L1 
_chem_comp.name                                  "11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H24 F2 N7 Pt" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-19 
_chem_comp.pdbx_modified_date                    2022-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        703.623 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5L1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        7V3T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5L1 PT1 PT1 PT 0 0 N N N 2.457  0.581  -7.874  ? ? ? PT1 5L1 1  
5L1 N7  N1  N  0 1 Y N N 3.156  -2.285 -7.132  ? ? ? N7  5L1 2  
5L1 N6  N2  N  0 1 Y N N 3.909  -1.012 -5.570  ? ? ? N6  5L1 3  
5L1 N5  N3  N  0 1 Y N N 4.554  1.313  -5.242  ? ? ? N5  5L1 4  
5L1 N3  N4  N  0 1 Y N N 1.410  -1.180 -10.225 ? ? ? N3  5L1 5  
5L1 C19 C1  C  0 1 Y N N 2.427  -0.514 -9.605  ? ? ? C19 5L1 6  
5L1 N1  N5  N  0 1 Y N N 1.693  2.111  -8.995  ? ? ? N1  5L1 7  
5L1 C28 C2  C  0 1 Y N N 3.227  -1.002 -6.763  ? ? ? C28 5L1 8  
5L1 N4  N6  N  0 1 Y N N 3.490  -0.770 -10.405 ? ? ? N4  5L1 9  
5L1 C25 C3  C  0 1 Y N N 4.258  0.140  -4.709  ? ? ? C25 5L1 10 
5L1 N2  N7  N  0 1 Y N N -0.256 -1.331 -8.465  ? ? ? N2  5L1 11 
5L1 C27 C4  C  0 1 Y N N 3.790  -3.110 -6.216  ? ? ? C27 5L1 12 
5L1 C11 C5  C  0 1 Y N N 2.288  2.007  -6.428  ? ? ? C11 5L1 13 
5L1 C17 C6  C  0 1 Y N N 1.848  -1.814 -11.384 ? ? ? C17 5L1 14 
5L1 C18 C7  C  0 1 Y N N 3.147  -1.570 -11.480 ? ? ? C18 5L1 15 
5L1 C15 C8  C  0 1 Y N N -0.939 -1.441 -10.788 ? ? ? C15 5L1 16 
5L1 C24 C9  C  0 1 Y N N 4.208  -0.135 -3.357  ? ? ? C24 5L1 17 
5L1 C26 C10 C  0 1 Y N N 4.270  -2.329 -5.247  ? ? ? C26 5L1 18 
5L1 C16 C11 C  0 1 Y N N 0.003  -1.337 -9.781  ? ? ? C16 5L1 19 
5L1 C14 C12 C  0 1 Y N N -2.243 -1.569 -10.396 ? ? ? C14 5L1 20 
5L1 C29 C13 C  0 1 N N N 2.525  -2.809 -8.381  ? ? ? C29 5L1 21 
5L1 C23 C14 C  0 1 Y N N 4.551  0.892  -2.495  ? ? ? C23 5L1 22 
5L1 C20 C15 C  0 1 N N N 4.854  -0.289 -10.166 ? ? ? C20 5L1 23 
5L1 C22 C16 C  0 1 Y N N 4.899  2.118  -3.008  ? ? ? C22 5L1 24 
5L1 C5  C17 C  0 1 Y N N 1.393  3.265  -8.285  ? ? ? C5  5L1 25 
5L1 C21 C18 C  0 1 Y N N 4.868  2.289  -4.367  ? ? ? C21 5L1 26 
5L1 C6  C19 C  0 1 Y N N 1.780  3.199  -6.875  ? ? ? C6  5L1 27 
5L1 F2  F1  F  0 1 N N N 2.989  2.909  -2.963  ? ? ? F2  5L1 28 
5L1 C13 C20 C  0 1 Y N N -2.572 -1.589 -9.050  ? ? ? C13 5L1 29 
5L1 C10 C21 C  0 1 Y N N 2.682  1.913  -5.112  ? ? ? C10 5L1 30 
5L1 C12 C22 C  0 1 Y N N -1.574 -1.458 -8.122  ? ? ? C12 5L1 31 
5L1 C1  C23 C  0 1 Y N N 1.375  2.023  -10.296 ? ? ? C1  5L1 32 
5L1 F1  F2  F  0 1 N N N 1.101  5.453  -6.401  ? ? ? F1  5L1 33 
5L1 C4  C24 C  0 1 Y N N 0.770  4.334  -8.964  ? ? ? C4  5L1 34 
5L1 C9  C25 C  0 1 Y N N 2.557  3.005  -4.305  ? ? ? C9  5L1 35 
5L1 C7  C26 C  0 1 Y N N 1.667  4.273  -5.958  ? ? ? C7  5L1 36 
5L1 C8  C27 C  0 1 Y N N 2.062  4.189  -4.672  ? ? ? C8  5L1 37 
5L1 C3  C28 C  0 1 Y N N 0.461  4.218  -10.278 ? ? ? C3  5L1 38 
5L1 C2  C29 C  0 1 Y N N 0.752  3.063  -11.020 ? ? ? C2  5L1 39 
5L1 H27 H1  H  0 1 N N N 3.879  -4.185 -6.276  ? ? ? H27 5L1 40 
5L1 H17 H2  H  0 1 N N N 1.247  -2.392 -12.071 ? ? ? H17 5L1 41 
5L1 H18 H3  H  0 1 N N N 3.812  -1.928 -12.252 ? ? ? H18 5L1 42 
5L1 H15 H4  H  0 1 N N N -0.659 -1.422 -11.831 ? ? ? H15 5L1 43 
5L1 H24 H5  H  0 1 N N N 3.915  -1.107 -2.989  ? ? ? H24 5L1 44 
5L1 H26 H6  H  0 1 N N N 4.829  -2.649 -4.380  ? ? ? H26 5L1 45 
5L1 H14 H7  H  0 1 N N N -3.021 -1.655 -11.140 ? ? ? H14 5L1 46 
5L1 H3C H8  H  0 1 N N N 2.621  -3.904 -8.409  ? ? ? H3C 5L1 47 
5L1 H3A H9  H  0 1 N N N 1.460  -2.534 -8.397  ? ? ? H3A 5L1 48 
5L1 H3B H10 H  0 1 N N N 3.029  -2.374 -9.257  ? ? ? H3B 5L1 49 
5L1 H23 H11 H  0 1 N N N 4.545  0.731  -1.427  ? ? ? H23 5L1 50 
5L1 H2A H12 H  0 1 N N N 4.872  0.326  -9.254  ? ? ? H2A 5L1 51 
5L1 H2B H13 H  0 1 N N N 5.529  -1.148 -10.042 ? ? ? H2B 5L1 52 
5L1 H2C H14 H  0 1 N N N 5.184  0.317  -11.023 ? ? ? H2C 5L1 53 
5L1 H22 H15 H  0 1 N N N 5.190  2.928  -2.355  ? ? ? H22 5L1 54 
5L1 H21 H16 H  0 1 N N N 5.110  3.265  -4.761  ? ? ? H21 5L1 55 
5L1 H13 H17 H  0 1 N N N -3.599 -1.706 -8.738  ? ? ? H13 5L1 56 
5L1 H10 H18 H  0 1 N N N 3.084  0.988  -4.725  ? ? ? H10 5L1 57 
5L1 H12 H19 H  0 1 N N N -1.839 -1.455 -7.075  ? ? ? H12 5L1 58 
5L1 H1  H20 H  0 1 N N N 1.608  1.107  -10.818 ? ? ? H1  5L1 59 
5L1 H4  H21 H  0 1 N N N 0.539  5.247  -8.435  ? ? ? H4  5L1 60 
5L1 H8  H22 H  0 1 N N N 1.984  5.021  -3.987  ? ? ? H8  5L1 61 
5L1 H3  H23 H  0 1 N N N -0.027 5.045  -10.773 ? ? ? H3  5L1 62 
5L1 H2  H24 H  0 1 N N N 0.516  2.976  -12.070 ? ? ? H2  5L1 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5L1 C18 C17 DOUB Y N 1  
5L1 C18 N4  SING Y N 2  
5L1 C17 N3  SING Y N 3  
5L1 C2  C1  DOUB Y N 4  
5L1 C2  C3  SING Y N 5  
5L1 C15 C14 DOUB Y N 6  
5L1 C15 C16 SING Y N 7  
5L1 N4  C20 SING N N 8  
5L1 N4  C19 DOUB Y N 9  
5L1 C14 C13 SING Y N 10 
5L1 C1  N1  SING Y N 11 
5L1 C3  C4  DOUB Y N 12 
5L1 N3  C16 SING N N 13 
5L1 N3  C19 SING Y N 14 
5L1 C16 N2  DOUB Y N 15 
5L1 C19 PT1 SING N N 16 
5L1 C13 C12 DOUB Y N 17 
5L1 N1  C5  DOUB Y N 18 
5L1 N1  PT1 SING N N 19 
5L1 C4  C5  SING Y N 20 
5L1 N2  C12 SING Y N 21 
5L1 C29 N7  SING N N 22 
5L1 C5  C6  SING N N 23 
5L1 PT1 C28 SING N N 24 
5L1 PT1 C11 SING N N 25 
5L1 N7  C28 SING Y N 26 
5L1 N7  C27 SING Y N 27 
5L1 C6  C11 DOUB Y N 28 
5L1 C6  C7  SING Y N 29 
5L1 C28 N6  DOUB Y N 30 
5L1 C11 C10 SING Y N 31 
5L1 F1  C7  SING N N 32 
5L1 C27 C26 DOUB Y N 33 
5L1 C7  C8  DOUB Y N 34 
5L1 N6  C26 SING Y N 35 
5L1 N6  C25 SING N N 36 
5L1 N5  C25 DOUB Y N 37 
5L1 N5  C21 SING Y N 38 
5L1 C10 C9  DOUB Y N 39 
5L1 C25 C24 SING Y N 40 
5L1 C8  C9  SING Y N 41 
5L1 C21 C22 DOUB Y N 42 
5L1 C9  F2  SING N N 43 
5L1 C24 C23 DOUB Y N 44 
5L1 C22 C23 SING Y N 45 
5L1 C27 H27 SING N N 46 
5L1 C17 H17 SING N N 47 
5L1 C18 H18 SING N N 48 
5L1 C15 H15 SING N N 49 
5L1 C24 H24 SING N N 50 
5L1 C26 H26 SING N N 51 
5L1 C14 H14 SING N N 52 
5L1 C29 H3C SING N N 53 
5L1 C29 H3A SING N N 54 
5L1 C29 H3B SING N N 55 
5L1 C23 H23 SING N N 56 
5L1 C20 H2A SING N N 57 
5L1 C20 H2B SING N N 58 
5L1 C20 H2C SING N N 59 
5L1 C22 H22 SING N N 60 
5L1 C21 H21 SING N N 61 
5L1 C13 H13 SING N N 62 
5L1 C10 H10 SING N N 63 
5L1 C12 H12 SING N N 64 
5L1 C1  H1  SING N N 65 
5L1 C4  H4  SING N N 66 
5L1 C8  H8  SING N N 67 
5L1 C3  H3  SING N N 68 
5L1 C2  H2  SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5L1 InChI            InChI                1.03  "InChI=1S/C11H6F2N.2C9H9N3.Pt/c12-8-4-5-9(10(13)7-8)11-3-1-2-6-14-11;2*1-11-6-7-12(8-11)9-4-2-3-5-10-9;/h1-4,6-7H;2*2-7H,1H3;" 
5L1 InChIKey         InChI                1.03  DJBNBBNLCQGCGN-UHFFFAOYSA-N                                                                                                    
5L1 SMILES_CANONICAL CACTVS               3.385 "Cn1cc[n](c2ccccn2)c1[Pt](c3cc(F)cc(F)c3c4ccccn4)c5n(cc[n]5C)c6ccccn6"                                                         
5L1 SMILES           CACTVS               3.385 "Cn1cc[n](c2ccccn2)c1[Pt](c3cc(F)cc(F)c3c4ccccn4)c5n(cc[n]5C)c6ccccn6"                                                         
5L1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[N]1=C(N(C=C1)c2ccccn2)[Pt]3(c4cc(cc(c4C5=[N]3C=CC=C5)F)F)C6=[N](C=CN6C)c7ccccn7"                                            
5L1 SMILES           "OpenEye OEToolkits" 2.0.7 "C[N]1=C(N(C=C1)c2ccccn2)[Pt]3(c4cc(cc(c4C5=[N]3C=CC=C5)F)F)C6=[N](C=CN6C)c7ccccn7"                                            
# 
_pdbx_chem_comp_identifier.comp_id           5L1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5L1 "Create component" 2021-08-19 PDBJ 
5L1 "Initial release"  2022-09-28 RCSB 
# 
