data_4L1
# 
_chem_comp.id                                    4L1 
_chem_comp.name                                  "5-(4-methylpiperazin-1-yl)-2'-(pyridin-2-yl)-1H,1'H-2,5'-bibenzimidazole" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H23 N7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-04-02 
_chem_comp.pdbx_modified_date                    2016-04-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        409.486 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4L1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Z4B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4L1 CAN  C1  C 0 1 N N N -2.323 4.603  0.376   7.011   -0.352 0.352  CAN  4L1 1  
4L1 CAL  C2  C 0 1 N N N -3.359 4.519  1.514   8.253   0.513  0.580  CAL  4L1 2  
4L1 NBD  N1  N 0 1 N N N -2.821 4.481  2.716   8.306   1.569  -0.442 NBD  4L1 3  
4L1 CAA  C3  C 0 1 N N N -3.790 4.394  3.631   9.525   2.375  -0.303 CAA  4L1 4  
4L1 CAM  C4  C 0 1 N N N -2.103 5.559  2.943   7.105   2.414  -0.384 CAM  4L1 5  
4L1 CAO  C5  C 0 1 N N N -0.859 5.582  2.054   5.864   1.549  -0.612 CAO  4L1 6  
4L1 NBE  N2  N 0 1 N N N -1.302 5.561  0.670   5.811   0.494  0.410  NBE  4L1 7  
4L1 CAV  C6  C 0 1 Y N N -0.258 5.790  -0.301  4.649   -0.275 0.278  CAV  4L1 8  
4L1 CAK  C7  C 0 1 Y N N -0.121 4.910  -1.315  3.412   0.340  0.301  CAK  4L1 9  
4L1 CAG  C8  C 0 1 Y N N 0.534  6.864  -0.090  4.747   -1.656 0.117  CAG  4L1 10 
4L1 CAI  C9  C 0 1 Y N N 1.572  7.125  -0.970  3.611   -2.424 -0.016 CAI  4L1 11 
4L1 CBC  C10 C 0 1 Y N N 1.766  6.259  -2.060  2.360   -1.823 0.011  CBC  4L1 12 
4L1 NAS  N3  N 0 1 Y N N 2.656  6.237  -3.062  1.065   -2.301 -0.092 NAS  4L1 13 
4L1 CBA  C11 C 0 1 Y N N 0.906  5.130  -2.237  2.252   -0.430 0.163  CBA  4L1 14 
4L1 NAQ  N4  N 0 1 Y N N 1.326  4.495  -3.348  0.931   -0.126 0.155  NAQ  4L1 15 
4L1 CAX  C12 C 0 1 Y N N 2.363  5.197  -3.833  0.228   -1.223 0.007  CAX  4L1 16 
4L1 CAU  C13 C 0 1 Y N N 3.166  4.787  -5.036  -1.248  -1.285 -0.048 CAU  4L1 17 
4L1 CAJ  C14 C 0 1 Y N N 2.669  3.779  -5.882  -1.995  -0.118 0.061  CAJ  4L1 18 
4L1 CAF  C15 C 0 1 Y N N 4.475  5.375  -5.221  -1.889  -2.520 -0.215 CAF  4L1 19 
4L1 CAH  C16 C 0 1 Y N N 5.274  4.967  -6.327  -3.251  -2.591 -0.268 CAH  4L1 20 
4L1 CBB  C17 C 0 1 Y N N 4.819  4.011  -7.189  -4.016  -1.436 -0.156 CBB  4L1 21 
4L1 NAT  N5  N 0 1 Y N N 5.308  3.413  -8.299  -5.372  -1.186 -0.171 NAT  4L1 22 
4L1 CAZ  C18 C 0 1 Y N N 3.435  3.388  -6.943  -3.389  -0.186 0.007  CAZ  4L1 23 
4L1 NAR  N6  N 0 1 Y N N 3.345  2.523  -7.961  -4.369  0.746  0.087  NAR  4L1 24 
4L1 CAY  C19 C 0 1 Y N N 4.415  2.522  -8.751  -5.538  0.165  -0.022 CAY  4L1 25 
4L1 CAW  C20 C 0 1 Y N N 4.588  1.641  -9.982  -6.842  0.863  0.016  CAW  4L1 26 
4L1 NAP  N7  N 0 1 Y N N 3.543  0.816  -10.531 -7.966  0.166  -0.101 NAP  4L1 27 
4L1 CAD  C21 C 0 1 Y N N 3.726  0.088  -11.592 -9.146  0.749  -0.072 CAD  4L1 28 
4L1 CAB  C22 C 0 1 Y N N 4.803  0.024  -12.211 -9.258  2.120  0.082  CAB  4L1 29 
4L1 CAC  C23 C 0 1 Y N N 5.848  0.671  -11.885 -8.109  2.886  0.207  CAC  4L1 30 
4L1 CAE  C24 C 0 1 Y N N 5.905  1.550  -10.763 -6.881  2.247  0.179  CAE  4L1 31 
4L1 HAN2 H1  H 0 0 N N N -2.834 4.898  -0.552  7.074   -0.828 -0.627 HAN2 4L1 32 
4L1 HAN1 H2  H 0 0 N N N -1.859 3.615  0.241   6.955   -1.117 1.126  HAN1 4L1 33 
4L1 HAL2 H3  H 0 0 N N N -4.014 5.401  1.454   8.203   0.967  1.569  HAL2 4L1 34 
4L1 HAL1 H4  H 0 0 N N N -3.958 3.607  1.372   9.147   -0.107 0.508  HAL1 4L1 35 
4L1 HAA2 H6  H 0 0 N N N -3.344 4.362  4.636   10.400  1.735  -0.417 HAA2 4L1 36 
4L1 HAA3 H7  H 0 0 N N N -4.450 5.270  3.550   9.539   3.149  -1.071 HAA3 4L1 37 
4L1 HAA1 H8  H 0 0 N N N -4.374 3.478  3.460   9.542   2.842  0.683  HAA1 4L1 38 
4L1 HAM2 H9  H 0 0 N N N -1.792 5.569  3.998   7.043   2.890  0.595  HAM2 4L1 39 
4L1 HAM1 H10 H 0 0 N N N -2.713 6.449  2.732   7.162   3.180  -1.157 HAM1 4L1 40 
4L1 HAO2 H11 H 0 0 N N N -0.235 4.700  2.261   4.970   2.169  -0.540 HAO2 4L1 41 
4L1 HAO1 H12 H 0 0 N N N -0.278 6.496  2.247   5.913   1.095  -1.601 HAO1 4L1 42 
4L1 HAK1 H13 H 0 0 N N N -0.784 4.063  -1.411  3.341   1.411  0.426  HAK1 4L1 43 
4L1 HAG1 H14 H 0 0 N N N 0.360  7.512  0.756   5.719   -2.127 0.096  HAG1 4L1 44 
4L1 HAI1 H15 H 0 0 N N N 2.219  7.977  -0.821  3.693   -3.494 -0.141 HAI1 4L1 45 
4L1 H2   H16 H 0 1 N N N 3.404  6.886  -3.203  0.801   -3.226 -0.212 H2   4L1 46 
4L1 HAJ1 H18 H 0 0 N N N 1.706  3.326  -5.697  -1.501  0.834  0.186  HAJ1 4L1 47 
4L1 HAF1 H19 H 0 0 N N N 4.843  6.116  -4.527  -1.301  -3.421 -0.304 HAF1 4L1 48 
4L1 HAH1 H20 H 0 0 N N N 6.244  5.416  -6.484  -3.735  -3.548 -0.398 HAH1 4L1 49 
4L1 H4   H21 H 0 1 N N N 6.196  3.605  -8.717  -6.078  -1.845 -0.270 H4   4L1 50 
4L1 HAD1 H23 H 0 0 N N N 2.894  -0.496 -11.958 -10.039 0.149  -0.171 HAD1 4L1 51 
4L1 HAB1 H24 H 0 0 N N N 4.854  -0.619 -13.077 -10.231 2.589  0.100  HAB1 4L1 52 
4L1 HAC1 H25 H 0 0 N N N 6.736  0.549  -12.487 -8.171  3.958  0.328  HAC1 4L1 53 
4L1 HAE1 H26 H 0 0 N N N 6.793  2.100  -10.489 -5.966  2.813  0.274  HAE1 4L1 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4L1 CAB CAC  DOUB Y N 1  
4L1 CAB CAD  SING Y N 2  
4L1 CAC CAE  SING Y N 3  
4L1 CAD NAP  DOUB Y N 4  
4L1 CAE CAW  DOUB Y N 5  
4L1 NAP CAW  SING Y N 6  
4L1 CAW CAY  SING N N 7  
4L1 CAY NAT  SING Y N 8  
4L1 CAY NAR  DOUB Y N 9  
4L1 NAT CBB  SING Y N 10 
4L1 NAR CAZ  SING Y N 11 
4L1 CBB CAZ  DOUB Y N 12 
4L1 CBB CAH  SING Y N 13 
4L1 CAZ CAJ  SING Y N 14 
4L1 CAH CAF  DOUB Y N 15 
4L1 CAJ CAU  DOUB Y N 16 
4L1 CAF CAU  SING Y N 17 
4L1 CAU CAX  SING N N 18 
4L1 CAX NAQ  DOUB Y N 19 
4L1 CAX NAS  SING Y N 20 
4L1 NAQ CBA  SING Y N 21 
4L1 NAS CBC  SING Y N 22 
4L1 CBA CBC  DOUB Y N 23 
4L1 CBA CAK  SING Y N 24 
4L1 CBC CAI  SING Y N 25 
4L1 CAK CAV  DOUB Y N 26 
4L1 CAI CAG  DOUB Y N 27 
4L1 CAV CAG  SING Y N 28 
4L1 CAV NBE  SING N N 29 
4L1 CAN NBE  SING N N 30 
4L1 CAN CAL  SING N N 31 
4L1 NBE CAO  SING N N 32 
4L1 CAL NBD  SING N N 33 
4L1 CAO CAM  SING N N 34 
4L1 NBD CAM  SING N N 35 
4L1 NBD CAA  SING N N 36 
4L1 CAN HAN2 SING N N 37 
4L1 CAN HAN1 SING N N 38 
4L1 CAL HAL2 SING N N 39 
4L1 CAL HAL1 SING N N 40 
4L1 CAA HAA2 SING N N 41 
4L1 CAA HAA3 SING N N 42 
4L1 CAA HAA1 SING N N 43 
4L1 CAM HAM2 SING N N 44 
4L1 CAM HAM1 SING N N 45 
4L1 CAO HAO2 SING N N 46 
4L1 CAO HAO1 SING N N 47 
4L1 CAK HAK1 SING N N 48 
4L1 CAG HAG1 SING N N 49 
4L1 CAI HAI1 SING N N 50 
4L1 NAS H2   SING N N 51 
4L1 CAJ HAJ1 SING N N 52 
4L1 CAF HAF1 SING N N 53 
4L1 CAH HAH1 SING N N 54 
4L1 NAT H4   SING N N 55 
4L1 CAD HAD1 SING N N 56 
4L1 CAB HAB1 SING N N 57 
4L1 CAC HAC1 SING N N 58 
4L1 CAE HAE1 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4L1 SMILES           ACDLabs              12.01 "C1N(CCN(C1)C)c2ccc3nc(nc3c2)c4cc5c(cc4)nc(n5)c6ncccc6"                                                                                                               
4L1 InChI            InChI                1.03  "InChI=1S/C24H23N7/c1-30-10-12-31(13-11-30)17-6-8-19-22(15-17)28-23(26-19)16-5-7-18-21(14-16)29-24(27-18)20-4-2-3-9-25-20/h2-9,14-15H,10-13H2,1H3,(H,26,28)(H,27,29)" 
4L1 InChIKey         InChI                1.03  QLJMJDOZNAQXQQ-UHFFFAOYSA-N                                                                                                                                           
4L1 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)c2ccc3[nH]c(nc3c2)c4ccc5[nH]c(nc5c4)c6ccccn6"                                                                                                             
4L1 SMILES           CACTVS               3.385 "CN1CCN(CC1)c2ccc3[nH]c(nc3c2)c4ccc5[nH]c(nc5c4)c6ccccn6"                                                                                                             
4L1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)c2ccc3c(c2)nc([nH]3)c4ccc5c(c4)nc([nH]5)c6ccccn6"                                                                                                         
4L1 SMILES           "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)c2ccc3c(c2)nc([nH]3)c4ccc5c(c4)nc([nH]5)c6ccccn6"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4L1 "SYSTEMATIC NAME" ACDLabs              12.01 "5-(4-methylpiperazin-1-yl)-2'-(pyridin-2-yl)-1H,1'H-2,5'-bibenzimidazole"            
4L1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-(4-methylpiperazin-1-yl)-2-(2-pyridin-2-yl-1H-benzimidazol-5-yl)-1H-benzimidazole" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4L1 "Create component" 2015-04-02 RCSB 
4L1 "Initial release"  2016-05-04 RCSB 
# 
