data_3L1
#

_chem_comp.id                                   3L1
_chem_comp.name                                 "(2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H13 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "L-2'-deoxyadenosine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-02-18
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       251.242
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3L1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZI4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3L1  N6      N6      N  0  1  N  N  N  23.530   -7.609  17.984   4.832   1.298  -0.417  N6      3L1   1  
3L1  C6      C6      C  0  1  Y  N  N  24.790   -7.813  18.149   3.872   0.358  -0.086  C6      3L1   2  
3L1  N1      N1      N  0  1  Y  N  N  25.438   -8.942  17.957   4.221  -0.865   0.297  N1      3L1   3  
3L1  C2      C2      C  0  1  Y  N  N  26.834   -9.218  18.103   3.311  -1.768   0.615  C2      3L1   4  
3L1  N3      N3      N  0  1  Y  N  N  27.617   -8.098  18.494   2.020  -1.516   0.572  N3      3L1   5  
3L1  C4      C4      C  0  1  Y  N  N  26.981   -6.900  18.708   1.576  -0.320   0.200  C4      3L1   6  
3L1  C5      C5      C  0  1  Y  N  N  25.659   -6.705  18.547   2.504   0.678  -0.142  C5      3L1   7  
3L1  N7      N7      N  0  1  Y  N  N  25.385   -5.418  18.857   1.797   1.786  -0.470  N7      3L1   8  
3L1  C8      C8      C  0  1  Y  N  N  26.597   -4.837  19.158   0.525   1.539  -0.349  C8      3L1   9  
3L1  N9      N9      N  0  1  Y  N  N  27.595   -5.791  19.062   0.337   0.250   0.053  N9      3L1  10  
3L1  "C1'"   "C1'"   C  0  1  N  N  S  29.007   -5.653  19.340  -0.952  -0.401   0.299  "C1'"   3L1  11  
3L1  "O4'"   "O4'"   O  0  1  N  N  N  29.237   -4.266  19.580  -1.972   0.581   0.581  "O4'"   3L1  12  
3L1  "C2'"   "C2'"   C  0  1  N  N  N  29.362   -6.297  20.654  -1.466  -1.098  -0.986  "C2'"   3L1  13  
3L1  "C3'"   "C3'"   C  0  1  N  N  R  30.590   -5.502  21.056  -2.995  -1.139  -0.744  "C3'"   3L1  14  
3L1  "O3'"   "O3'"   O  0  1  N  N  N  31.792   -6.068  20.554  -3.386  -2.416  -0.235  "O3'"   3L1  15  
3L1  "C4'"   "C4'"   C  0  1  N  N  S  30.450   -4.159  20.347  -3.240  -0.041   0.309  "C4'"   3L1  16  
3L1  "C5'"   "C5'"   C  0  1  N  N  N  30.392   -2.997  21.327  -4.221   0.997  -0.240  "C5'"   3L1  17  
3L1  "O5'"   "O5'"   O  0  1  N  N  N  29.781   -1.809  20.785  -4.519   1.955   0.777  "O5'"   3L1  18  
3L1  HN6     HN6     H  0  1  N  N  N  23.081   -7.556  18.876   5.773   1.067  -0.370  HN6     3L1  19  
3L1  HN6A    HN6A    H  0  0  N  N  N  23.393   -6.750  17.491   4.565   2.187  -0.699  HN6A    3L1  20  
3L1  H2      H2      H  0  1  N  N  N  27.258  -10.196  17.930   3.639  -2.751   0.921  H2      3L1  21  
3L1  H8      H8      H  0  1  N  N  N  26.745   -3.801  19.426  -0.265   2.248  -0.548  H8      3L1  22  
3L1  "H1'"   "H1'"   H  0  1  N  N  N  29.575   -6.094  18.508  -0.869  -1.115   1.119  "H1'"   3L1  23  
3L1  "H2'"   "H2'"   H  0  1  N  N  N  28.551   -6.212  21.392  -1.228  -0.507  -1.870  "H2'"   3L1  24  
3L1  "H2'A"  "H2'A"  H  0  0  N  N  N  29.535   -7.381  20.587  -1.059  -2.105  -1.072  "H2'A"  3L1  25  
3L1  "H3'"   "H3'"   H  0  1  N  N  N  30.646   -5.459  22.154  -3.533  -0.915  -1.664  "H3'"   3L1  26  
3L1  "HO3'"  "HO3'"  H  0  0  N  N  N  31.715   -6.194  19.616  -3.200  -3.152  -0.835  "HO3'"  3L1  27  
3L1  "H4'"   "H4'"   H  0  1  N  N  N  31.322   -3.948  19.710  -3.638  -0.485   1.222  "H4'"   3L1  28  
3L1  "H5'"   "H5'"   H  0  1  N  N  N  29.803   -3.316  22.199  -3.774   1.502  -1.096  "H5'"   3L1  29  
3L1  "H5'A"  "H5'A"  H  0  0  N  N  N  31.430   -2.738  21.583  -5.140   0.499  -0.551  "H5'A"  3L1  30  
3L1  "HO5'"  "HO5'"  H  0  0  N  N  N  29.647   -1.176  21.481  -5.137   2.645   0.498  "HO5'"  3L1  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3L1  N6     C6      SING  N  N   1  
3L1  C6     N1      DOUB  Y  N   2  
3L1  C6     C5      SING  Y  N   3  
3L1  N1     C2      SING  Y  N   4  
3L1  C2     N3      DOUB  Y  N   5  
3L1  N3     C4      SING  Y  N   6  
3L1  C4     C5      DOUB  Y  N   7  
3L1  C4     N9      SING  Y  N   8  
3L1  C5     N7      SING  Y  N   9  
3L1  N7     C8      DOUB  Y  N  10  
3L1  C8     N9      SING  Y  N  11  
3L1  N9     "C1'"   SING  N  N  12  
3L1  "C1'"  "O4'"   SING  N  N  13  
3L1  "C1'"  "C2'"   SING  N  N  14  
3L1  "O4'"  "C4'"   SING  N  N  15  
3L1  "C2'"  "C3'"   SING  N  N  16  
3L1  "C3'"  "O3'"   SING  N  N  17  
3L1  "C3'"  "C4'"   SING  N  N  18  
3L1  "C4'"  "C5'"   SING  N  N  19  
3L1  "C5'"  "O5'"   SING  N  N  20  
3L1  N6     HN6     SING  N  N  21  
3L1  N6     HN6A    SING  N  N  22  
3L1  C2     H2      SING  N  N  23  
3L1  C8     H8      SING  N  N  24  
3L1  "C1'"  "H1'"   SING  N  N  25  
3L1  "C2'"  "H2'"   SING  N  N  26  
3L1  "C2'"  "H2'A"  SING  N  N  27  
3L1  "C3'"  "H3'"   SING  N  N  28  
3L1  "O3'"  "HO3'"  SING  N  N  29  
3L1  "C4'"  "H4'"   SING  N  N  30  
3L1  "C5'"  "H5'"   SING  N  N  31  
3L1  "C5'"  "H5'A"  SING  N  N  32  
3L1  "O5'"  "HO5'"  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3L1  SMILES            ACDLabs               10.04  "n2c1c(ncnc1n(c2)C3OC(C(O)C3)CO)N"  
3L1  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H](O)[C@H](CO)O3"  
3L1  SMILES            CACTVS                3.341  "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3"  
3L1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@H]([C@@H](O3)CO)O)N"  
3L1  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3CC(C(O3)CO)O)N"  
3L1  InChI             InChI                 1.03   "InChI=1S/C10H13N5O3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(17)6(2-16)18-7/h3-7,16-17H,1-2H2,(H2,11,12,13)/t5-,6+,7+/m1/s1"  
3L1  InChIKey          InChI                 1.03   OLXZPDWKRNYJJZ-VQVTYTSYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3L1  "SYSTEMATIC NAME"  ACDLabs               10.04  "9-(2-deoxy-beta-L-erythro-pentofuranosyl)-9H-purin-6-amine"  
3L1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3R,5S)-5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3L1  "Create component"      2008-02-18  PDBJ  
3L1  "Modify aromatic_flag"  2011-06-04  RCSB  
3L1  "Modify descriptor"     2011-06-04  RCSB  
3L1  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3L1
_pdbx_chem_comp_synonyms.name        "L-2'-deoxyadenosine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
