data_1R1
# 
_chem_comp.id                                    1R1 
_chem_comp.name                                  "hexadecyl hydrogen (R)-(3-azidopropyl)phosphonate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H40 N3 O3 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-05-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1R1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4KE9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1R1 C16 C16 C 0  1 N N N N N N -3.045 -8.832  46.205 15.221  0.755  -0.151 C16 1R1 1  
1R1 C15 C15 C 0  1 N N N N N N -2.581 -9.808  45.132 14.000  -0.044 0.309  C15 1R1 2  
1R1 C14 C14 C 0  1 N N N N N N -1.567 -10.771 45.744 12.725  0.652  -0.172 C14 1R1 3  
1R1 C13 C13 C 0  1 N N N N N N -1.983 -12.212 45.445 11.503  -0.147 0.288  C13 1R1 4  
1R1 C12 C12 C 0  1 N N N N N N -0.855 -12.915 44.686 10.228  0.548  -0.193 C12 1R1 5  
1R1 C11 C11 C 0  1 N N N N N N -0.753 -14.369 45.131 9.007   -0.250 0.267  C11 1R1 6  
1R1 C10 C10 C 0  1 N N N N N N 0.524  -14.973 44.560 7.732   0.445  -0.214 C10 1R1 7  
1R1 C9  C9  C 0  1 N N N N N N 1.627  -14.931 45.615 6.511   -0.354 0.246  C9  1R1 8  
1R1 C8  C8  C 0  1 N N N N N N 2.786  -14.079 45.113 5.236   0.342  -0.235 C8  1R1 9  
1R1 C7  C7  C 0  1 N N N N N N 3.958  -14.976 44.723 4.015   -0.457 0.225  C7  1R1 10 
1R1 C6  C6  C 0  1 N N N N N N 5.180  -14.611 45.558 2.740   0.238  -0.256 C6  1R1 11 
1R1 C5  C5  C 0  1 N N N N N N 5.491  -13.122 45.415 1.518   -0.560 0.204  C5  1R1 12 
1R1 C4  C4  C 0  1 N N N N N N 6.493  -12.700 46.495 0.243   0.135  -0.277 C4  1R1 13 
1R1 C3  C3  C 0  1 N N N N N N 7.879  -13.276 46.184 -0.978  -0.664 0.183  C3  1R1 14 
1R1 C2  C2  C 0  1 N N N N N N 8.798  -13.090 47.392 -2.253  0.032  -0.298 C2  1R1 15 
1R1 C1  C1  C 0  1 N N N N N N 10.254 -12.951 46.936 -3.474  -0.767 0.162  C1  1R1 16 
1R1 O1  O1  O 0  1 N N N N N N 10.819 -11.731 47.427 -4.665  -0.117 -0.287 O1  1R1 17 
1R1 P1  P1  P 0  1 N N N N N N 12.045 -12.027 48.435 -6.141  -0.683 0.018  P1  1R1 18 
1R1 O2  O2  O 0  1 N N N N N N 11.946 -11.132 49.587 -6.308  -0.866 1.477  O2  1R1 19 
1R1 C1H C1H C 0  1 N N N N N N 12.034 -13.711 49.012 -7.385  0.502  -0.592 C1H 1R1 20 
1R1 C2H C2H C 0  1 N N N N N N 10.681 -14.036 49.627 -8.783  0.025  -0.193 C2H 1R1 21 
1R1 C3H C3H C 0  1 N N N N N N 10.869 -15.021 50.773 -9.826  1.020  -0.705 C3H 1R1 22 
1R1 N1  N1  N 0  1 N N N N N N 10.705 -16.391 50.276 -11.165 0.563  -0.322 N1  1R1 23 
1R1 N2  N2  N 1  1 N N N N N N 10.257 -17.111 50.992 -11.814 1.210  0.327  N2  1R1 24 
1R1 N3  N3  N -1 1 N N N N N N 9.808  -17.937 51.590 -12.464 1.857  0.977  N3  1R1 25 
1R1 H1  H1  H 0  1 N N N N N N -3.777 -8.133  45.774 15.227  0.814  -1.239 H1  1R1 26 
1R1 H2  H2  H 0  1 N N N N N N -3.513 -9.389  47.030 15.176  1.761  0.267  H2  1R1 27 
1R1 H3  H3  H 0  1 N N N N N N -2.181 -8.269  46.587 16.129  0.260  0.192  H3  1R1 28 
1R1 H4  H4  H 0  1 N N N N N N -2.111 -9.253  44.306 14.045  -1.049 -0.109 H4  1R1 29 
1R1 H5  H5  H 0  1 N N N N N N -3.443 -10.374 44.750 13.993  -0.103 1.398  H5  1R1 30 
1R1 H6  H6  H 0  1 N N N N N N -0.574 -10.580 45.312 12.679  1.657  0.246  H6  1R1 31 
1R1 H7  H7  H 0  1 N N N N N N -1.529 -10.619 46.833 12.731  0.711  -1.260 H7  1R1 32 
1R1 H8  H8  H 0  1 N N N N N N -2.895 -12.211 44.830 11.549  -1.153 -0.130 H8  1R1 33 
1R1 H9  H9  H 0  1 N N N N N N -2.177 -12.742 46.389 11.497  -0.206 1.377  H9  1R1 34 
1R1 H10 H10 H 0  1 N N N N N N 0.097  -12.403 44.892 10.183  1.554  0.225  H10 1R1 35 
1R1 H11 H11 H 0  1 N N N N N N -1.064 -12.878 43.607 10.235  0.607  -1.281 H11 1R1 36 
1R1 H12 H12 H 0  1 N N N N N N -1.624 -14.930 44.761 9.052   -1.256 -0.151 H12 1R1 37 
1R1 H13 H13 H 0  1 N N N N N N -0.725 -14.418 46.230 9.000   -0.309 1.355  H13 1R1 38 
1R1 H14 H14 H 0  1 N N N N N N 0.336  -16.017 44.268 7.687   1.451  0.204  H14 1R1 39 
1R1 H15 H15 H 0  1 N N N N N N 0.839  -14.396 43.678 7.739   0.504  -1.302 H15 1R1 40 
1R1 H16 H16 H 0  1 N N N N N N 1.229  -14.496 46.543 6.556   -1.359 -0.172 H16 1R1 41 
1R1 H17 H17 H 0  1 N N N N N N 1.983  -15.953 45.812 6.504   -0.413 1.335  H17 1R1 42 
1R1 H18 H18 H 0  1 N N N N N N 3.103  -13.389 45.909 5.191   1.347  0.183  H18 1R1 43 
1R1 H19 H19 H 0  1 N N N N N N 2.461  -13.501 44.235 5.242   0.401  -1.323 H19 1R1 44 
1R1 H20 H20 H 0  1 N N N N N N 3.691  -16.027 44.905 4.060   -1.463 -0.193 H20 1R1 45 
1R1 H21 H21 H 0  1 N N N N N N 4.188  -14.835 43.657 4.008   -0.516 1.314  H21 1R1 46 
1R1 H22 H22 H 0  1 N N N N N N 4.980  -14.840 46.615 2.694   1.244  0.162  H22 1R1 47 
1R1 H23 H23 H 0  1 N N N N N N 6.044  -15.198 45.213 2.746   0.297  -1.344 H23 1R1 48 
1R1 H24 H24 H 0  1 N N N N N N 5.922  -12.932 44.421 1.564   -1.566 -0.214 H24 1R1 49 
1R1 H25 H25 H 0  1 N N N N N N 4.564  -12.542 45.529 1.512   -0.619 1.293  H25 1R1 50 
1R1 H26 H26 H 0  1 N N N N N N 6.554  -11.602 46.525 0.198   1.141  0.141  H26 1R1 51 
1R1 H27 H27 H 0  1 N N N N N N 6.154  -13.075 47.472 0.250   0.194  -1.365 H27 1R1 52 
1R1 H28 H28 H 0  1 N N N N N N 7.787  -14.348 45.957 -0.933  -1.669 -0.235 H28 1R1 53 
1R1 H29 H29 H 0  1 N N N N N N 8.306  -12.753 45.316 -0.985  -0.723 1.272  H29 1R1 54 
1R1 H30 H30 H 0  1 N N N N N N 8.501  -12.183 47.938 -2.298  1.038  0.120  H30 1R1 55 
1R1 H31 H31 H 0  1 N N N N N N 8.707  -13.963 48.055 -2.246  0.091  -1.386 H31 1R1 56 
1R1 H32 H32 H 0  1 N N N N N N 10.837 -13.801 47.321 -3.429  -1.773 -0.256 H32 1R1 57 
1R1 H33 H33 H 0  1 N N N N N N 10.290 -12.950 45.837 -3.481  -0.826 1.251  H33 1R1 58 
1R1 H35 H35 H 0  1 N N N N N N 12.223 -14.388 48.166 -7.197  1.482  -0.156 H35 1R1 59 
1R1 H36 H36 H 0  1 N N N N N N 12.821 -13.843 49.770 -7.320  0.569  -1.678 H36 1R1 60 
1R1 H37 H37 H 0  1 N N N N N N 10.220 -13.113 50.009 -8.970  -0.956 -0.629 H37 1R1 61 
1R1 H38 H38 H 0  1 N N N N N N 10.028 -14.483 48.863 -8.847  -0.042 0.893  H38 1R1 62 
1R1 H39 H39 H 0  1 N N N N N N 11.878 -14.903 51.195 -9.638  2.001  -0.269 H39 1R1 63 
1R1 H40 H40 H 0  1 N N N N N N 10.119 -14.822 51.553 -9.762  1.087  -1.791 H40 1R1 64 
1R1 O3  O3  O 0  1 N Y N N N N ?      ?       ?      -6.337  -2.098 -0.725 O3  1R1 65 
1R1 H34 H34 H 0  1 N N N N N N ?      ?       ?      -6.242  -2.054 -1.686 H34 1R1 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1R1 C10 C11 SING N N 1  
1R1 C10 C9  SING N N 2  
1R1 C12 C11 SING N N 3  
1R1 C12 C13 SING N N 4  
1R1 C7  C8  SING N N 5  
1R1 C7  C6  SING N N 6  
1R1 C8  C9  SING N N 7  
1R1 C15 C14 SING N N 8  
1R1 C15 C16 SING N N 9  
1R1 C5  C6  SING N N 10 
1R1 C5  C4  SING N N 11 
1R1 C13 C14 SING N N 12 
1R1 C3  C4  SING N N 13 
1R1 C3  C2  SING N N 14 
1R1 C1  C2  SING N N 15 
1R1 C1  O1  SING N N 16 
1R1 O1  P1  SING N N 17 
1R1 P1  C1H SING N N 18 
1R1 P1  O2  DOUB N N 19 
1R1 C1H C2H SING N N 20 
1R1 C2H C3H SING N N 21 
1R1 N1  C3H SING N N 22 
1R1 N1  N2  DOUB N N 23 
1R1 N2  N3  DOUB N N 24 
1R1 C16 H1  SING N N 25 
1R1 C16 H2  SING N N 26 
1R1 C16 H3  SING N N 27 
1R1 C15 H4  SING N N 28 
1R1 C15 H5  SING N N 29 
1R1 C14 H6  SING N N 30 
1R1 C14 H7  SING N N 31 
1R1 C13 H8  SING N N 32 
1R1 C13 H9  SING N N 33 
1R1 C12 H10 SING N N 34 
1R1 C12 H11 SING N N 35 
1R1 C11 H12 SING N N 36 
1R1 C11 H13 SING N N 37 
1R1 C10 H14 SING N N 38 
1R1 C10 H15 SING N N 39 
1R1 C9  H16 SING N N 40 
1R1 C9  H17 SING N N 41 
1R1 C8  H18 SING N N 42 
1R1 C8  H19 SING N N 43 
1R1 C7  H20 SING N N 44 
1R1 C7  H21 SING N N 45 
1R1 C6  H22 SING N N 46 
1R1 C6  H23 SING N N 47 
1R1 C5  H24 SING N N 48 
1R1 C5  H25 SING N N 49 
1R1 C4  H26 SING N N 50 
1R1 C4  H27 SING N N 51 
1R1 C3  H28 SING N N 52 
1R1 C3  H29 SING N N 53 
1R1 C2  H30 SING N N 54 
1R1 C2  H31 SING N N 55 
1R1 C1  H32 SING N N 56 
1R1 C1  H33 SING N N 57 
1R1 C1H H35 SING N N 58 
1R1 C1H H36 SING N N 59 
1R1 C2H H37 SING N N 60 
1R1 C2H H38 SING N N 61 
1R1 C3H H39 SING N N 62 
1R1 C3H H40 SING N N 63 
1R1 P1  O3  SING N N 64 
1R1 O3  H34 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1R1 SMILES           ACDLabs              12.01 "[N-]=[N+]=N\CCCP(=O)(OCCCCCCCCCCCCCCCC)O"                                                                         
1R1 InChI            InChI                1.03  "InChI=1S/C19H40N3O3P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18-25-26(23,24)19-16-17-21-22-20/h2-19H2,1H3,(H,23,24)" 
1R1 InChIKey         InChI                1.03  HEAPPSCQSYJNSZ-UHFFFAOYSA-N                                                                                        
1R1 SMILES_CANONICAL CACTVS               3.370 "CCCCCCCCCCCCCCCCO[P](O)(=O)CCCN=[N+]=[N-]"                                                                        
1R1 SMILES           CACTVS               3.370 "CCCCCCCCCCCCCCCCO[P](O)(=O)CCCN=[N+]=[N-]"                                                                        
1R1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCCCCCCCCCCOP(=O)(CCCN=[N+]=[N-])O"                                                                          
1R1 SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCCCCCCCCCCCCCOP(=O)(CCCN=[N+]=[N-])O"                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1R1 "SYSTEMATIC NAME" ACDLabs              12.01 "hexadecyl hydrogen (R)-(3-azidopropyl)phosphonate" 
1R1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-azidopropyl(hexadecoxy)phosphinic acid"          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1R1 "Create component" 2013-05-02 RCSB 
1R1 "Initial release"  2013-09-18 RCSB 
1R1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            1R1 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
