data_0T1
#

_chem_comp.id                                   0T1
_chem_comp.name                                 
;[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]
[(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H38 N7 O16 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "DETHIACOENZYME A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-05-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       749.496
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0T1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4FAC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0T1  N1A  N1A  N  0  1  Y  N  N  26.528  13.156  -33.798  -5.389   6.165   1.728  N1A  0T1   1  
0T1  C2A  C2A  C  0  1  Y  N  N  27.719  13.710  -33.566  -6.097   5.101   2.060  C2A  0T1   2  
0T1  N3A  N3A  N  0  1  Y  N  N  28.005  14.307  -32.401  -5.744   3.881   1.713  N3A  0T1   3  
0T1  C4A  C4A  C  0  1  Y  N  N  27.087  14.371  -31.421  -4.641   3.671   1.002  C4A  0T1   4  
0T1  C5M  C5M  C  0  1  Y  N  N  25.843  13.809  -31.630  -3.853   4.771   0.623  C5M  0T1   5  
0T1  C6A  C6A  C  0  1  Y  N  N  25.576  13.196  -32.848  -4.271   6.053   1.018  C6A  0T1   6  
0T1  N6A  N6A  N  0  1  N  N  N  24.284  12.603  -33.087  -3.535   7.174   0.674  N6A  0T1   7  
0T1  N7A  N7A  N  0  1  Y  N  N  25.131  14.007  -30.506  -2.804   4.286  -0.083  N7A  0T1   8  
0T1  C8A  C8A  C  0  1  Y  N  N  25.884  14.669  -29.621  -2.896   2.990  -0.161  C8A  0T1   9  
0T1  N9A  N9A  N  0  1  Y  N  N  27.071  14.893  -30.181  -4.013   2.562   0.493  N9A  0T1  10  
0T1  C1B  C1B  C  0  1  N  N  R  28.182  15.552  -29.580  -4.460   1.174   0.628  C1B  0T1  11  
0T1  C2B  C2B  C  0  1  N  N  R  27.957  17.024  -29.504  -5.490   0.823  -0.476  C2B  0T1  12  
0T1  O2B  O2B  O  0  1  N  N  N  28.307  17.619  -30.705  -6.813   1.184  -0.073  O2B  0T1  13  
0T1  C3B  C3B  C  0  1  N  N  S  28.876  17.390  -28.496  -5.345  -0.715  -0.578  C3B  0T1  14  
0T1  O3B  O3B  O  0  1  N  N  N  30.179  17.444  -29.067  -6.364  -1.366   0.184  O3B  0T1  15  
0T1  P3B  P3B  P  0  1  N  N  N  31.072  18.794  -29.055  -7.418  -2.396  -0.463  P3B  0T1  16  
0T1  O7A  O7A  O  0  1  N  N  N  32.018  18.708  -27.881  -8.357  -1.615  -1.512  O7A  0T1  17  
0T1  O8A  O8A  O  0  1  N  N  N  31.862  18.919  -30.356  -6.688  -3.476  -1.162  O8A  0T1  18  
0T1  O9A  O9A  O  0  1  N  N  N  30.180  20.019  -28.897  -8.330  -3.032   0.702  O9A  0T1  19  
0T1  C4B  C4B  C  0  1  N  N  R  28.856  16.271  -27.558  -3.955  -1.004   0.023  C4B  0T1  20  
0T1  O4B  O4B  O  0  1  N  N  N  28.358  15.156  -28.261  -3.370   0.262   0.374  O4B  0T1  21  
0T1  C5B  C5B  C  0  1  N  N  N  27.953  16.603  -26.447  -3.078  -1.713  -1.011  C5B  0T1  22  
0T1  O5B  O5B  O  0  1  N  N  N  26.621  16.096  -26.486  -1.835  -2.080  -0.410  O5B  0T1  23  
0T1  P1A  P1A  P  0  1  N  N  N  25.381  17.041  -26.103  -0.667  -2.847  -1.209  P1A  0T1  24  
0T1  O1A  O1A  O  0  1  N  N  N  24.421  17.172  -27.272  -0.315  -2.079  -2.425  O1A  0T1  25  
0T1  O2A  O2A  O  0  1  N  N  N  25.893  18.403  -25.682  -1.179  -4.314  -1.631  O2A  0T1  26  
0T1  O3A  O3A  O  0  1  N  N  N  24.515  16.439  -24.932   0.631  -2.981  -0.265  O3A  0T1  27  
0T1  P2A  P2A  P  0  1  N  N  N  25.038  15.554  -23.747   2.194  -3.246  -0.544  P2A  0T1  28  
0T1  O4A  O4A  O  0  1  N  N  N  25.717  16.434  -22.709   2.418  -4.795  -0.919  O4A  0T1  29  
0T1  O5A  O5A  O  0  1  N  N  N  23.815  14.905  -23.145   2.645  -2.396  -1.669  O5A  0T1  30  
0T1  O6A  O6A  O  0  1  N  N  N  26.065  14.462  -24.221   3.043  -2.885   0.775  O6A  0T1  31  
0T1  CBP  CBP  C  0  1  N  N  N  26.679  12.081  -24.588   4.952  -2.520   2.212  CBP  0T1  32  
0T1  CCP  CCP  C  0  1  N  N  N  25.669  13.261  -24.751   4.471  -2.914   0.814  CCP  0T1  33  
0T1  CDP  CDP  C  0  1  N  N  N  26.119  10.824  -25.280   4.462  -1.108   2.540  CDP  0T1  34  
0T1  CEP  CEP  C  0  1  N  N  N  28.020  12.466  -25.174   4.393  -3.505   3.240  CEP  0T1  35  
0T1  CAP  CAP  C  0  1  N  N  R  26.856  11.794  -23.102   6.481  -2.551   2.253  CAP  0T1  36  
0T1  OAP  OAP  O  0  1  N  N  N  25.581  11.628  -22.536   6.934  -3.895   2.076  OAP  0T1  37  
0T1  C9P  C9P  C  0  1  N  N  N  27.702  10.573  -22.750   7.031  -1.685   1.150  C9P  0T1  38  
0T1  O9P  O9P  O  0  1  N  N  N  28.943  10.659  -22.659   7.611  -2.193   0.213  O9P  0T1  39  
0T1  N8P  N8P  N  0  1  N  N  N  27.008   9.363  -22.329   6.879  -0.347   1.203  N8P  0T1  40  
0T1  C7P  C7P  C  0  1  N  N  N  27.731   8.239  -21.760   7.327   0.486   0.085  C7P  0T1  41  
0T1  C6P  C6P  C  0  1  N  N  N  27.875   8.226  -20.238   7.040   1.956   0.398  C6P  0T1  42  
0T1  C5P  C5P  C  0  1  N  N  N  26.554   8.046  -19.510   7.501   2.814  -0.752  C5P  0T1  43  
0T1  O5P  O5P  O  0  1  N  N  N  25.511   7.974  -20.150   8.009   2.300  -1.726  O5P  0T1  44  
0T1  N4P  N4P  N  0  1  N  N  N  26.591   7.777  -18.086   7.349   4.152  -0.698  N4P  0T1  45  
0T1  C3P  C3P  C  0  1  N  N  N  25.369   7.769  -17.250   7.797   4.986  -1.817  C3P  0T1  46  
0T1  C2P  C2P  C  0  1  N  N  N  24.903   9.099  -16.653   7.510   6.456  -1.504  C2P  0T1  47  
0T1  C1P  C1P  C  0  1  N  N  N  25.950   9.670  -15.678   7.978   7.326  -2.672  C1P  0T1  48  
0T1  H1   H1   H  0  1  N  N  N  28.473  13.676  -34.338  -6.999   5.236   2.638  H1   0T1  49  
0T1  H2   H2   H  0  1  N  N  N  24.263  12.206  -34.005  -3.834   8.054   0.952  H2   0T1  50  
0T1  H3   H3   H  0  1  N  N  N  24.116  11.886  -32.410  -2.721   7.080   0.156  H3   0T1  51  
0T1  H4   H4   H  0  1  N  N  N  25.583  14.969  -28.628  -2.191   2.348  -0.669  H4   0T1  52  
0T1  H5   H5   H  0  1  N  N  N  29.094  15.359  -30.165  -4.885   1.003   1.617  H5   0T1  53  
0T1  H6   H6   H  0  1  N  N  N  26.919  17.245  -29.214  -5.228   1.302  -1.419  H6   0T1  54  
0T1  H7   H7   H  0  1  N  N  N  28.161  18.556  -30.649  -6.929   2.130   0.092  H7   0T1  55  
0T1  H8   H8   H  0  1  N  N  N  28.601  18.334  -28.003  -5.383  -1.034  -1.620  H8   0T1  56  
0T1  H9   H9   H  0  1  N  N  N  32.915  18.749  -28.192  -8.867  -0.892  -1.122  H9   0T1  57  
0T1  H10  H10  H  0  1  N  N  N  30.304  20.599  -29.639  -8.990  -3.664   0.385  H10  0T1  58  
0T1  H11  H11  H  0  1  N  N  N  29.869  16.076  -27.176  -4.058  -1.626   0.912  H11  0T1  59  
0T1  H12  H12  H  0  1  N  N  N  28.419  16.226  -25.525  -3.588  -2.608  -1.367  H12  0T1  60  
0T1  H13  H13  H  0  1  N  N  N  27.883  17.700  -26.400  -2.892  -1.043  -1.850  H13  0T1  61  
0T1  H14  H14  H  0  1  N  N  N  25.509  19.072  -26.237  -1.427  -4.874  -0.882  H14  0T1  62  
0T1  H15  H15  H  0  1  N  N  N  25.231  16.395  -21.893   2.144  -5.411  -0.226  H15  0T1  63  
0T1  H16  H16  H  0  1  N  N  N  25.493  13.408  -25.827   4.820  -3.920   0.580  H16  0T1  64  
0T1  H17  H17  H  0  1  N  N  N  24.728  12.970  -24.262   4.869  -2.212   0.081  H17  0T1  65  
0T1  H18  H18  H  0  1  N  N  N  25.146  10.564  -24.838   4.765  -0.424   1.747  H18  0T1  66  
0T1  H19  H19  H  0  1  N  N  N  25.992  11.023  -26.354   3.375  -1.110   2.622  H19  0T1  67  
0T1  H20  H20  H  0  1  N  N  N  26.819   9.987  -25.142   4.896  -0.783   3.485  H20  0T1  68  
0T1  H21  H21  H  0  1  N  N  N  28.399  13.364  -24.665   4.667  -3.178   4.243  H21  0T1  69  
0T1  H22  H22  H  0  1  N  N  N  28.732  11.639  -25.036   3.307  -3.543   3.155  H22  0T1  70  
0T1  H23  H23  H  0  1  N  N  N  27.904  12.675  -26.248   4.807  -4.497   3.055  H23  0T1  71  
0T1  H24  H24  H  0  1  N  N  N  27.339  12.673  -22.650   6.826  -2.175   3.217  H24  0T1  72  
0T1  H25  H25  H  0  1  N  N  N  25.667  11.448  -21.607   6.663  -4.294   1.238  H25  0T1  73  
0T1  H26  H26  H  0  1  N  N  N  26.015   9.305  -22.434   6.473   0.064   1.982  H26  0T1  74  
0T1  H27  H27  H  0  1  N  N  N  27.205   7.319  -22.055   8.398   0.349  -0.064  H27  0T1  75  
0T1  H28  H28  H  0  1  N  N  N  28.743   8.238  -22.192   6.794   0.197  -0.820  H28  0T1  76  
0T1  H29  H29  H  0  1  N  N  N  28.543   7.399  -19.958   5.969   2.094   0.547  H29  0T1  77  
0T1  H30  H30  H  0  1  N  N  N  28.321   9.181  -19.921   7.573   2.246   1.304  H30  0T1  78  
0T1  H31  H31  H  0  1  N  N  N  27.473   7.590  -17.653   6.943   4.563   0.080  H31  0T1  79  
0T1  H32  H32  H  0  1  N  N  N  24.548   7.384  -17.873   8.868   4.848  -1.966  H32  0T1  80  
0T1  H33  H33  H  0  1  N  N  N  25.549   7.079  -16.413   7.264   4.696  -2.722  H33  0T1  81  
0T1  H34  H34  H  0  1  N  N  N  24.740   9.820  -17.467   6.439   6.593  -1.355  H34  0T1  82  
0T1  H35  H35  H  0  1  N  N  N  23.959   8.938  -16.112   8.043   6.745  -0.598  H35  0T1  83  
0T1  H36  H36  H  0  1  N  N  N  25.587  10.623  -15.267   9.049   7.189  -2.821  H36  0T1  84  
0T1  H37  H37  H  0  1  N  N  N  26.115   8.956  -14.858   7.445   7.037  -3.577  H37  0T1  85  
0T1  H38  H38  H  0  1  N  N  N  26.896   9.838  -16.213   7.774   8.374  -2.449  H38  0T1  86  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0T1  N1A  C2A  DOUB  Y  N   1  
0T1  N1A  C6A  SING  Y  N   2  
0T1  C2A  N3A  SING  Y  N   3  
0T1  N6A  C6A  SING  N  N   4  
0T1  C6A  C5M  DOUB  Y  N   5  
0T1  N3A  C4A  DOUB  Y  N   6  
0T1  C5M  C4A  SING  Y  N   7  
0T1  C5M  N7A  SING  Y  N   8  
0T1  C4A  N9A  SING  Y  N   9  
0T1  O2B  C2B  SING  N  N  10  
0T1  N7A  C8A  DOUB  Y  N  11  
0T1  O8A  P3B  DOUB  N  N  12  
0T1  N9A  C8A  SING  Y  N  13  
0T1  N9A  C1B  SING  N  N  14  
0T1  C1B  C2B  SING  N  N  15  
0T1  C1B  O4B  SING  N  N  16  
0T1  C2B  C3B  SING  N  N  17  
0T1  O3B  P3B  SING  N  N  18  
0T1  O3B  C3B  SING  N  N  19  
0T1  P3B  O9A  SING  N  N  20  
0T1  P3B  O7A  SING  N  N  21  
0T1  C3B  C4B  SING  N  N  22  
0T1  O4B  C4B  SING  N  N  23  
0T1  C4B  C5B  SING  N  N  24  
0T1  O1A  P1A  DOUB  N  N  25  
0T1  O5B  C5B  SING  N  N  26  
0T1  O5B  P1A  SING  N  N  27  
0T1  P1A  O2A  SING  N  N  28  
0T1  P1A  O3A  SING  N  N  29  
0T1  CDP  CBP  SING  N  N  30  
0T1  CEP  CBP  SING  N  N  31  
0T1  O3A  P2A  SING  N  N  32  
0T1  CCP  CBP  SING  N  N  33  
0T1  CCP  O6A  SING  N  N  34  
0T1  CBP  CAP  SING  N  N  35  
0T1  O6A  P2A  SING  N  N  36  
0T1  P2A  O5A  DOUB  N  N  37  
0T1  P2A  O4A  SING  N  N  38  
0T1  CAP  C9P  SING  N  N  39  
0T1  CAP  OAP  SING  N  N  40  
0T1  C9P  O9P  DOUB  N  N  41  
0T1  C9P  N8P  SING  N  N  42  
0T1  N8P  C7P  SING  N  N  43  
0T1  C7P  C6P  SING  N  N  44  
0T1  C6P  C5P  SING  N  N  45  
0T1  O5P  C5P  DOUB  N  N  46  
0T1  C5P  N4P  SING  N  N  47  
0T1  N4P  C3P  SING  N  N  48  
0T1  C3P  C2P  SING  N  N  49  
0T1  C2P  C1P  SING  N  N  50  
0T1  C2A  H1   SING  N  N  51  
0T1  N6A  H2   SING  N  N  52  
0T1  N6A  H3   SING  N  N  53  
0T1  C8A  H4   SING  N  N  54  
0T1  C1B  H5   SING  N  N  55  
0T1  C2B  H6   SING  N  N  56  
0T1  O2B  H7   SING  N  N  57  
0T1  C3B  H8   SING  N  N  58  
0T1  O7A  H9   SING  N  N  59  
0T1  O9A  H10  SING  N  N  60  
0T1  C4B  H11  SING  N  N  61  
0T1  C5B  H12  SING  N  N  62  
0T1  C5B  H13  SING  N  N  63  
0T1  O2A  H14  SING  N  N  64  
0T1  O4A  H15  SING  N  N  65  
0T1  CCP  H16  SING  N  N  66  
0T1  CCP  H17  SING  N  N  67  
0T1  CDP  H18  SING  N  N  68  
0T1  CDP  H19  SING  N  N  69  
0T1  CDP  H20  SING  N  N  70  
0T1  CEP  H21  SING  N  N  71  
0T1  CEP  H22  SING  N  N  72  
0T1  CEP  H23  SING  N  N  73  
0T1  CAP  H24  SING  N  N  74  
0T1  OAP  H25  SING  N  N  75  
0T1  N8P  H26  SING  N  N  76  
0T1  C7P  H27  SING  N  N  77  
0T1  C7P  H28  SING  N  N  78  
0T1  C6P  H29  SING  N  N  79  
0T1  C6P  H30  SING  N  N  80  
0T1  N4P  H31  SING  N  N  81  
0T1  C3P  H32  SING  N  N  82  
0T1  C3P  H33  SING  N  N  83  
0T1  C2P  H34  SING  N  N  84  
0T1  C2P  H35  SING  N  N  85  
0T1  C1P  H36  SING  N  N  86  
0T1  C1P  H37  SING  N  N  87  
0T1  C1P  H38  SING  N  N  88  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0T1  SMILES            ACDLabs               12.01  "O=C(NCCC)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O"  
0T1  InChI             InChI                 1.03   "InChI=1S/C22H38N7O16P3/c1-4-6-24-13(30)5-7-25-20(33)17(32)22(2,3)9-42-48(39,40)45-47(37,38)41-8-12-16(44-46(34,35)36)15(31)21(43-12)29-11-28-14-18(23)26-10-27-19(14)29/h10-12,15-17,21,31-32H,4-9H2,1-3H3,(H,24,30)(H,25,33)(H,37,38)(H,39,40)(H2,23,26,27)(H2,34,35,36)/t12-,15-,16-,17+,21-/m1/s1"  
0T1  InChIKey          InChI                 1.03   JJSFSVFKDOGQNC-GORZOVPNSA-N  
0T1  SMILES_CANONICAL  CACTVS                3.370  "CCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"  
0T1  SMILES            CACTVS                3.370  "CCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"  
0T1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"  
0T1  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0T1  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-(propylamino)propyl]amino}butyl dihydrogen diphosphate (non-preferred name)"  
0T1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0T1  "Create component"  2012-05-29  RCSB  
0T1  "Initial release"   2013-05-22  RCSB  
0T1  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0T1
_pdbx_chem_comp_synonyms.name        "DETHIACOENZYME A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
