data_ZD0
#

_chem_comp.id                                   ZD0
_chem_comp.name                                 "methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-alpha-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H21 N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       279.287
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ZD0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1F4Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZD0  C1    C1    C  0  1  N  N  S  41.815  36.627   -7.793   3.536  -0.169  -0.038  C1    ZD0   1  
ZD0  C1M   C1M   C  0  1  N  N  N  43.948  36.935   -6.970   4.494   0.729  -2.044  C1M   ZD0   2  
ZD0  C2    C2    C  0  1  N  N  S  41.634  35.780   -6.538   2.777  -1.389   0.490  C2    ZD0   3  
ZD0  C3    C3    C  0  1  N  N  S  42.959  35.165   -6.084   1.347  -1.367  -0.058  C3    ZD0   4  
ZD0  C4    C4    C  0  1  N  N  S  43.639  34.575   -7.300   0.679  -0.048   0.343  C4    ZD0   5  
ZD0  C5    C5    C  0  1  N  N  R  43.762  35.574   -8.453   1.519   1.120  -0.179  C5    ZD0   6  
ZD0  C6    C6    C  0  1  N  N  N  44.711  34.971   -9.495   0.891   2.442   0.268  C6    ZD0   7  
ZD0  C7    C7    C  0  1  N  N  N  45.135  32.778   -7.407  -1.613   0.780   0.342  C7    ZD0   8  
ZD0  C8    C8    C  0  1  N  N  R  46.219  31.834   -6.883  -2.995   0.847  -0.254  C8    ZD0   9  
ZD0  C9    C9    C  0  1  N  N  N  47.636  32.413   -6.932  -3.658  -0.529  -0.160  C9    ZD0  10  
ZD0  C10   C10   C  0  1  N  N  N  48.452  31.625   -5.946  -5.010  -0.494  -0.875  C10   ZD0  11  
ZD0  N4    N4    N  0  1  N  N  N  45.009  34.058   -6.998  -0.665   0.017  -0.237  N4    ZD0  12  
ZD0  O1    O1    O  0  1  N  N  N  42.746  37.604   -7.384   3.617  -0.238  -1.463  O1    ZD0  13  
ZD0  O2    O2    O  0  1  N  N  N  40.695  34.754   -6.771   2.742  -1.348   1.918  O2    ZD0  14  
ZD0  O3    O3    O  0  1  N  N  N  42.917  34.020   -5.211   0.608  -2.461   0.489  O3    ZD0  15  
ZD0  O5    O5    O  0  1  N  N  N  42.420  35.933   -8.915   2.846   1.022   0.343  O5    ZD0  16  
ZD0  O7    O7    O  0  1  N  N  N  44.287  32.379   -8.205  -1.353   1.414   1.343  O7    ZD0  17  
ZD0  O8    O8    O  0  1  N  N  N  45.955  31.374   -5.588  -3.778   1.803   0.463  O8    ZD0  18  
ZD0  O10   O10   O  0  1  N  N  N  48.192  30.226   -6.116  -5.629  -1.779  -0.787  O10   ZD0  19  
ZD0  H101  H101  H  0  0  N  N  N  49.521  31.822   -6.115  -5.651   0.251  -0.405  H101  ZD0  20  
ZD0  H102  H102  H  0  0  N  N  N  48.181  31.926   -4.923  -4.859  -0.235  -1.923  H102  ZD0  21  
ZD0  H10O  H10O  H  0  0  N  N  N  48.708  29.729   -5.492  -6.492  -1.831  -1.220  H10O  ZD0  22  
ZD0  H1    H1    H  0  1  N  N  N  40.854  37.079   -8.082   4.542  -0.157   0.382  H1    ZD0  23  
ZD0  H1M1  H1M1  H  0  0  N  N  N  44.690  37.680   -6.646   4.499   0.611  -3.127  H1M1  ZD0  24  
ZD0  H1M2  H1M2  H  0  0  N  N  N  43.721  36.257   -6.134   4.150   1.731  -1.789  H1M2  ZD0  25  
ZD0  H1M3  H1M3  H  0  0  N  N  N  44.354  36.356   -7.812   5.503   0.582  -1.657  H1M3  ZD0  26  
ZD0  H2    H2    H  0  1  N  N  N  41.271  36.436   -5.733   3.279  -2.300   0.164  H2    ZD0  27  
ZD0  HO2   HO2   H  0  1  N  Y  N  40.591  34.234   -5.983   3.616  -1.355   2.333  HO2   ZD0  28  
ZD0  H3    H3    H  0  1  N  N  N  43.596  35.953   -5.655   1.371  -1.449  -1.144  H3    ZD0  29  
ZD0  HO3   HO3   H  0  1  N  Y  N  43.803  33.742   -5.009   0.980  -3.329   0.280  HO3   ZD0  30  
ZD0  H4    H4    H  0  1  N  N  N  43.027  33.732   -7.653   0.610   0.011   1.429  H4    ZD0  31  
ZD0  H4N   H4N   H  0  1  N  N  N  45.732  34.587   -6.554  -0.873  -0.490  -1.037  H4N   ZD0  32  
ZD0  H5    H5    H  0  1  N  N  N  44.243  36.480   -8.055   1.554   1.085  -1.268  H5    ZD0  33  
ZD0  H61   H61   H  0  1  N  N  N  44.820  35.668  -10.339   0.857   2.477   1.357  H61   ZD0  34  
ZD0  H62   H62   H  0  1  N  N  N  45.695  34.794   -9.036   1.490   3.273  -0.104  H62   ZD0  35  
ZD0  H63   H63   H  0  1  N  N  N  44.299  34.018   -9.858  -0.121   2.516  -0.130  H63   ZD0  36  
ZD0  H8    H8    H  0  1  N  N  N  46.220  30.963   -7.555  -2.926   1.145  -1.300  H8    ZD0  37  
ZD0  H8O   H8O   H  0  1  N  N  N  46.654  30.794   -5.309  -3.882   1.600   1.403  H8O   ZD0  38  
ZD0  H91   H91   H  0  1  N  N  N  48.055  32.307   -7.943  -3.017  -1.274  -0.631  H91   ZD0  39  
ZD0  H92   H92   H  0  1  N  N  N  47.622  33.476   -6.650  -3.808  -0.789   0.888  H92   ZD0  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZD0  C1   O1    SING  N  N   1  
ZD0  C1   O5    SING  N  N   2  
ZD0  C1   C2    SING  N  N   3  
ZD0  O1   C1M   SING  N  N   4  
ZD0  C1   H1    SING  N  N   5  
ZD0  C1M  H1M1  SING  N  N   6  
ZD0  C1M  H1M2  SING  N  N   7  
ZD0  C1M  H1M3  SING  N  N   8  
ZD0  C2   O2    SING  N  N   9  
ZD0  C2   H2    SING  N  N  10  
ZD0  O2   HO2   SING  N  N  11  
ZD0  C2   C3    SING  N  N  12  
ZD0  C3   O3    SING  N  N  13  
ZD0  C3   H3    SING  N  N  14  
ZD0  O3   HO3   SING  N  N  15  
ZD0  C3   C4    SING  N  N  16  
ZD0  C4   H4    SING  N  N  17  
ZD0  C4   N4    SING  N  N  18  
ZD0  N4   H4N   SING  N  N  19  
ZD0  C4   C5    SING  N  N  20  
ZD0  C5   O5    SING  N  N  21  
ZD0  C5   C6    SING  N  N  22  
ZD0  C5   H5    SING  N  N  23  
ZD0  C6   H61   SING  N  N  24  
ZD0  C6   H62   SING  N  N  25  
ZD0  C6   H63   SING  N  N  26  
ZD0  N4   C7    SING  N  N  27  
ZD0  C7   O7    DOUB  N  N  28  
ZD0  C7   C8    SING  N  N  29  
ZD0  C8   H8    SING  N  N  30  
ZD0  C8   O8    SING  N  N  31  
ZD0  O8   H8O   SING  N  N  32  
ZD0  C8   C9    SING  N  N  33  
ZD0  C9   H91   SING  N  N  34  
ZD0  C9   H92   SING  N  N  35  
ZD0  C9   C10   SING  N  N  36  
ZD0  C10  H101  SING  N  N  37  
ZD0  C10  H102  SING  N  N  38  
ZD0  C10  O10   SING  N  N  39  
ZD0  O10  H10O  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZD0  SMILES            ACDLabs               12.01  "O=C(NC1C(OC(OC)C(O)C1O)C)C(O)CCO"  
ZD0  InChI             InChI                 1.03   "InChI=1S/C11H21NO7/c1-5-7(12-10(17)6(14)3-4-13)8(15)9(16)11(18-2)19-5/h5-9,11,13-16H,3-4H2,1-2H3,(H,12,17)/t5-,6-,7-,8+,9+,11+/m1/s1"  
ZD0  InChIKey          InChI                 1.03   ASFHRCHAPWVLRF-CWJAVHARSA-N  
ZD0  SMILES_CANONICAL  CACTVS                3.370  "CO[C@H]1O[C@H](C)[C@@H](NC(=O)[C@H](O)CCO)[C@H](O)[C@@H]1O"  
ZD0  SMILES            CACTVS                3.370  "CO[CH]1O[CH](C)[CH](NC(=O)[CH](O)CCO)[CH](O)[CH]1O"  
ZD0  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)OC)O)O)NC(=O)[C@@H](CCO)O"  
ZD0  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1C(C(C(C(O1)OC)O)O)NC(=O)C(CCO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZD0  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-alpha-D-mannopyranoside"  
ZD0  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R)-N-[(2R,3S,4S,5S,6S)-6-methoxy-2-methyl-4,5-bis(oxidanyl)oxan-3-yl]-2,4-bis(oxidanyl)butanamide"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
ZD0  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
ZD0  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
ZD0  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
ZD0  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZD0  "Create component"          2012-12-17  RCSB  
ZD0  "Modify atom id"            2013-01-02  RCSB  
ZD0  "Modify atom id"            2020-05-09  RCSB  
ZD0  "Modify component atom id"  2020-07-17  RCSB  
ZD0  "Initial release"           2020-07-29  RCSB  
##
