data_YX0
#

_chem_comp.id                                   YX0
_chem_comp.name                                 "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl alpha-L-fucopyranoside"
_chem_comp.type                                 L-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H19 N O7"
_chem_comp.mon_nstd_parent_comp_id              FUC
_chem_comp.pdbx_synonyms                        
;[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside;
[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl alpha-L-fucoside;
[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl L-fucoside;
[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl fucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-05-22
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       289.282
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YX0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2VUC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  YX0  "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside"  PDB  ?  
2  YX0  "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl alpha-L-fucoside"                   PDB  ?  
3  YX0  "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl L-fucoside"                         PDB  ?  
4  YX0  "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl fucoside"                           PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YX0  C1      C1      C  0  1  N  N  R  38.660   4.573  -3.429  -1.741  -0.448  -1.205  C1      YX0   1  
YX0  C2      C2      C  0  1  N  N  S  37.339   4.326  -2.730  -2.657  -1.400  -0.432  C2      YX0   2  
YX0  C3      C3      C  0  1  N  N  R  36.534   3.323  -3.527  -2.903  -0.834   0.970  C3      YX0   3  
YX0  C4      C4      C  0  1  N  N  S  37.302   2.043  -3.767  -3.499   0.572   0.843  C4      YX0   4  
YX0  C5      C5      C  0  1  N  N  S  38.662   2.378  -4.402  -2.550   1.447   0.021  C5      YX0   5  
YX0  C6      C6      C  0  1  N  N  N  39.537   1.131  -4.539  -3.166   2.836  -0.161  C6      YX0   6  
YX0  O1      O1      O  0  1  N  N  N  38.389   5.181  -4.697  -0.477  -0.362  -0.544  O1      YX0   7  
YX0  O2      O2      O  0  1  N  N  N  36.550   5.529  -2.576  -2.034  -2.682  -0.326  O2      YX0   8  
YX0  O3      O3      O  0  1  N  N  N  35.338   3.030  -2.771  -3.816  -1.678   1.674  O3      YX0   9  
YX0  O4      O4      O  0  1  N  N  N  37.483   1.456  -2.452  -4.766   0.496   0.189  O4      YX0  10  
YX0  O5      O5      O  0  1  N  N  N  39.368   3.335  -3.621  -2.340   0.848  -1.259  O5      YX0  11  
YX0  "O5'"   "O5'"   O  0  1  N  N  N  42.858   8.526  -1.818   5.730  -0.922  -0.903  "O5'"   YX0  12  
YX0  "C5'"   "C5'"   C  0  1  N  N  N  41.833   9.093  -2.201   5.228  -0.240   0.165  "C5'"   YX0  13  
YX0  "C6'"   "C6'"   C  0  1  N  N  N  41.452  10.478  -1.765   6.120   0.091   1.334  "C6'"   YX0  14  
YX0  "C4'"   "C4'"   C  0  1  N  N  N  40.897   8.445  -3.173   3.937   0.138   0.175  "C4'"   YX0  15  
YX0  "C3'"   "C3'"   C  0  1  N  N  N  40.951   7.123  -3.642   2.932  -0.100  -0.875  "C3'"   YX0  16  
YX0  "C2'"   "C2'"   C  0  1  N  N  N  39.902   7.007  -4.534   1.782   0.439  -0.464  "C2'"   YX0  17  
YX0  "C1'"   "C1'"   C  0  1  N  N  N  39.485   5.770  -5.289   0.495   0.416  -1.247  "C1'"   YX0  18  
YX0  O       O       O  0  1  N  N  N  39.213   8.148  -4.621   1.933   1.005   0.748  O       YX0  19  
YX0  N       N       N  0  1  N  N  N  39.849   9.097  -3.754   3.268   0.834   1.188  N       YX0  20  
YX0  H1      H1      H  0  1  N  N  N  39.288   5.234  -2.814  -1.597  -0.825  -2.218  H1      YX0  21  
YX0  H2      H2      H  0  1  N  N  N  37.573   3.948  -1.724  -3.607  -1.498  -0.957  H2      YX0  22  
YX0  H3      H3      H  0  1  N  N  N  36.299   3.751  -4.513  -1.959  -0.782   1.513  H3      YX0  23  
YX0  HO2     HA      H  0  1  N  Y  N  36.377   5.679  -1.654  -1.844  -3.099  -1.178  HO2     YX0  24  
YX0  H4      H4      H  0  1  N  N  N  36.779   1.354  -4.447  -3.625   1.004   1.836  H4      YX0  25  
YX0  HO3     HB      H  0  1  N  Y  N  35.554   2.966  -1.848  -3.505  -2.587   1.785  HO3     YX0  26  
YX0  H5      H5      H  0  1  N  N  N  38.452   2.790  -5.400  -1.596   1.538   0.541  H5      YX0  27  
YX0  HO4     HC      H  0  1  N  Y  N  37.523   0.510  -2.530  -5.202   1.351   0.075  HO4     YX0  28  
YX0  H61     H6C1    H  0  1  N  N  N  39.747   0.945  -5.603  -3.327   3.293   0.815  H61     YX0  29  
YX0  H62     H6C2    H  0  1  N  N  N  40.483   1.286  -4.000  -2.490   3.460  -0.747  H62     YX0  30  
YX0  H63     H6C3    H  0  1  N  N  N  39.010   0.265  -4.113  -4.119   2.745  -0.682  H63     YX0  31  
YX0  "H1'1"  "H1'1"  H  0  0  N  N  N  40.319   5.053  -5.292   0.674  -0.026  -2.228  "H1'1"  YX0  32  
YX0  "H1'2"  "H1'2"  H  0  0  N  N  N  39.219   6.057  -6.317   0.125   1.434  -1.369  "H1'2"  YX0  33  
YX0  "H5'"   "H5'"   H  0  1  N  N  N  43.435   8.380  -2.558   5.083  -1.088  -1.603  "H5'"   YX0  34  
YX0  "H6'1"  "H6'1"  H  0  0  N  N  N  41.359  10.505  -0.669   6.591   1.060   1.168  "H6'1"  YX0  35  
YX0  "H6'2"  "H6'2"  H  0  0  N  N  N  42.228  11.189  -2.085   5.524   0.129   2.246  "H6'2"  YX0  36  
YX0  "H6'3"  "H6'3"  H  0  0  N  N  N  40.490  10.754  -2.222   6.888  -0.675   1.433  "H6'3"  YX0  37  
YX0  "H3'"   "H3'"   H  0  1  N  N  N  41.662   6.359  -3.365   3.096  -0.617  -1.808  "H3'"   YX0  38  
YX0  H       H       H  0  1  N  N  N  39.208   9.420  -3.058   3.646   1.142   2.027  H       YX0  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YX0  C1     C2      SING  N  N   1  
YX0  C1     O1      SING  N  N   2  
YX0  C1     O5      SING  N  N   3  
YX0  C2     C3      SING  N  N   4  
YX0  C2     O2      SING  N  N   5  
YX0  C3     C4      SING  N  N   6  
YX0  C3     O3      SING  N  N   7  
YX0  C4     C5      SING  N  N   8  
YX0  C4     O4      SING  N  N   9  
YX0  C5     C6      SING  N  N  10  
YX0  C5     O5      SING  N  N  11  
YX0  O1     "C1'"   SING  N  N  12  
YX0  "O5'"  "C5'"   SING  N  N  13  
YX0  "C5'"  "C6'"   SING  N  N  14  
YX0  "C5'"  "C4'"   DOUB  N  N  15  
YX0  "C4'"  "C3'"   SING  N  N  16  
YX0  "C4'"  N       SING  N  N  17  
YX0  "C3'"  "C2'"   DOUB  N  N  18  
YX0  "C2'"  "C1'"   SING  N  N  19  
YX0  "C2'"  O       SING  N  N  20  
YX0  O      N       SING  N  N  21  
YX0  C1     H1      SING  N  N  22  
YX0  C2     H2      SING  N  N  23  
YX0  C3     H3      SING  N  N  24  
YX0  O2     HO2     SING  N  N  25  
YX0  C4     H4      SING  N  N  26  
YX0  O3     HO3     SING  N  E  27  
YX0  C5     H5      SING  N  N  28  
YX0  O4     HO4     SING  N  N  29  
YX0  C6     H61     SING  N  N  30  
YX0  C6     H62     SING  N  N  31  
YX0  C6     H63     SING  N  N  32  
YX0  "C1'"  "H1'1"  SING  N  N  33  
YX0  "C1'"  "H1'2"  SING  N  N  34  
YX0  "O5'"  "H5'"   SING  N  N  35  
YX0  "C6'"  "H6'1"  SING  N  N  36  
YX0  "C6'"  "H6'2"  SING  N  N  37  
YX0  "C6'"  "H6'3"  SING  N  N  38  
YX0  "C3'"  "H3'"   SING  N  N  39  
YX0  N      H       SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YX0  SMILES            ACDLabs               10.04  "O(CC=1ONC(=C(\O)C)\C=1)C2OC(C(O)C(O)C2O)C"  
YX0  SMILES_CANONICAL  CACTVS                3.341  "C[C@@H]1O[C@@H](OCC2=C\C(NO2)=C(C)/O)[C@@H](O)[C@H](O)[C@@H]1O"  
YX0  SMILES            CACTVS                3.341  "C[CH]1O[CH](OCC2=CC(NO2)=C(C)O)[CH](O)[CH](O)[CH]1O"  
YX0  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OCC2=C/C(=C(/C)\O)/NO2)O)O)O"  
YX0  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)OCC2=CC(=C(C)O)NO2)O)O)O"  
YX0  InChI             InChI                 1.03   "InChI=1S/C12H19NO7/c1-5(14)8-3-7(20-13-8)4-18-12-11(17)10(16)9(15)6(2)19-12/h3,6,9-17H,4H2,1-2H3/b8-5+/t6-,9+,10+,11-,12+/m0/s1"  
YX0  InChIKey          InChI                 1.03   DQRDRRBASDQFKR-AWJQDWPASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YX0  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(3E)-3-(1-hydroxyethylidene)-2,3-dihydroisoxazol-5-yl]methyl 6-deoxy-alpha-L-galactopyranoside"  
YX0  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4R,5S,6S)-2-[[(3E)-3-(1-hydroxyethylidene)-1,2-oxazol-5-yl]methoxy]-6-methyl-oxane-3,4,5-triol"  
#
_pdbx_chem_comp_related.comp_id            YX0
_pdbx_chem_comp_related.related_comp_id    FUC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  YX0  C1   FUC  C1   "Carbohydrate core"  
 2  YX0  C2   FUC  C2   "Carbohydrate core"  
 3  YX0  C3   FUC  C3   "Carbohydrate core"  
 4  YX0  C4   FUC  C4   "Carbohydrate core"  
 5  YX0  C5   FUC  C5   "Carbohydrate core"  
 6  YX0  C6   FUC  C6   "Carbohydrate core"  
 7  YX0  O1   FUC  O1   "Carbohydrate core"  
 8  YX0  O2   FUC  O2   "Carbohydrate core"  
 9  YX0  O3   FUC  O3   "Carbohydrate core"  
10  YX0  O4   FUC  O4   "Carbohydrate core"  
11  YX0  O5   FUC  O5   "Carbohydrate core"  
12  YX0  H1   FUC  H1   "Carbohydrate core"  
13  YX0  H2   FUC  H2   "Carbohydrate core"  
14  YX0  H3   FUC  H3   "Carbohydrate core"  
15  YX0  H4   FUC  H4   "Carbohydrate core"  
16  YX0  H5   FUC  H5   "Carbohydrate core"  
17  YX0  H61  FUC  H61  "Carbohydrate core"  
18  YX0  H62  FUC  H62  "Carbohydrate core"  
19  YX0  H63  FUC  H63  "Carbohydrate core"  
20  YX0  HO2  FUC  HO2  "Carbohydrate core"  
21  YX0  HO3  FUC  HO3  "Carbohydrate core"  
22  YX0  HO4  FUC  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
YX0  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
YX0  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
YX0  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
YX0  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YX0  "Create component"          2008-05-22  EBI   
YX0  "Modify descriptor"         2011-06-04  RCSB  
YX0  "Other modification"        2020-07-03  RCSB  
YX0  "Modify parent residue"     2020-07-17  RCSB  
YX0  "Modify name"               2020-07-17  RCSB  
YX0  "Modify synonyms"           2020-07-17  RCSB  
YX0  "Modify internal type"      2020-07-17  RCSB  
YX0  "Modify linking type"       2020-07-17  RCSB  
YX0  "Modify atom id"            2020-07-17  RCSB  
YX0  "Modify component atom id"  2020-07-17  RCSB  
YX0  "Modify leaving atom flag"  2020-07-17  RCSB  
##
