data_YH0
# 
_chem_comp.id                                    YH0 
_chem_comp.name                                  "2-(4-{[2-(1H-benzimidazol-2-yl)ethyl]carbamoyl}phenyl)-1H-benzimidazole-7-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H20 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-02 
_chem_comp.pdbx_modified_date                    2024-02-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        424.455 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YH0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G0H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YH0 N1  N1  N 0 1 Y N N N N N 13.581 5.757  124.490 -5.085 0.463  0.043  N1  YH0 1  
YH0 C7  C1  C 0 1 Y N N N N N 13.869 4.994  128.142 -8.591 -0.882 -0.081 C7  YH0 2  
YH0 C8  C2  C 0 1 Y N N N N N 12.202 6.800  122.713 -2.620 -0.100 -0.007 C8  YH0 3  
YH0 N2  N2  N 0 1 Y N N N N N 11.553 6.479  125.098 -4.545 -1.652 -0.152 N2  YH0 4  
YH0 C9  C3  C 0 1 Y N N N N N 10.967 6.623  122.097 -1.661 -1.111 -0.100 C9  YH0 5  
YH0 O1  O1  O 0 1 N N N N N N 12.225 8.141  117.846 1.863  2.040  0.186  O1  YH0 6  
YH0 C1  C4  C 0 1 Y N N N N N 14.300 5.037  126.814 -7.616 0.110  0.013  C1  YH0 7  
YH0 C5  C5  C 0 1 Y N N N N N 11.727 5.955  127.566 -6.897 -2.575 -0.248 C5  YH0 8  
YH0 C6  C6  C 0 1 Y N N N N N 12.606 5.443  128.510 -8.225 -2.210 -0.209 C6  YH0 9  
YH0 N3  N3  N 0 1 N N N N N N 10.461 9.255  118.674 2.441  -0.096 -0.006 N3  YH0 10 
YH0 C4  C7  C 0 1 Y N N N N N 12.159 6.007  126.247 -5.898 -1.599 -0.154 C4  YH0 11 
YH0 C3  C8  C 0 1 Y N N N N N 12.445 6.317  124.084 -4.059 -0.441 -0.040 C3  YH0 12 
YH0 C2  C9  C 0 1 Y N N N N N 13.419 5.561  125.857 -6.260 -0.247 -0.024 C2  YH0 13 
YH0 N4  N4  N 0 1 Y N N N N N 9.736  10.156 114.221 7.070  -1.212 0.803  N4  YH0 14 
YH0 N   N5  N 0 1 N N N N N N 16.161 4.783  125.286 -9.311 1.865  0.183  N   YH0 15 
YH0 C   C10 C 0 1 N N N N N N 15.681 4.554  126.503 -8.007 1.526  0.149  C   YH0 16 
YH0 O   O2  O 0 1 N N N N N N 16.332 3.962  127.372 -7.153 2.388  0.230  O   YH0 17 
YH0 C10 C11 C 0 1 Y N N N N N 10.731 7.126  120.830 -0.322 -0.794 -0.069 C10 YH0 18 
YH0 C11 C12 C 0 1 Y N N N N N 11.725 7.817  120.143 0.078  0.539  0.055  C11 YH0 19 
YH0 C12 C13 C 0 1 Y N N N N N 12.964 7.982  120.755 -0.882 1.550  0.147  C12 YH0 20 
YH0 C13 C14 C 0 1 Y N N N N N 13.199 7.479  122.021 -2.221 1.232  0.122  C13 YH0 21 
YH0 C14 C15 C 0 1 N N N N N N 11.490 8.412  118.791 1.516  0.880  0.083  C14 YH0 22 
YH0 C15 C16 C 0 1 N N N N N N 10.108 9.904  117.418 3.866  0.242  0.022  C15 YH0 23 
YH0 C16 C17 C 0 1 N N N N N N 9.596  8.923  116.390 4.696  -1.038 -0.094 C16 YH0 24 
YH0 C17 C18 C 0 1 Y N N N N N 9.029  9.612  115.194 6.163  -0.690 -0.066 C17 YH0 25 
YH0 C18 C19 C 0 1 Y N N N N N 8.788  10.643 113.318 8.293  -0.641 0.511  C18 YH0 26 
YH0 C19 C20 C 0 1 Y N N N N N 7.509  10.367 113.796 8.065  0.236  -0.563 C19 YH0 27 
YH0 C20 C21 C 0 1 Y N N N N N 6.370  10.715 113.084 9.131  0.970  -1.089 C20 YH0 28 
YH0 C21 C22 C 0 1 Y N N N N N 6.535  11.353 111.863 10.382 0.831  -0.557 C21 YH0 29 
YH0 C22 C23 C 0 1 Y N N N N N 7.805  11.637 111.374 10.607 -0.034 0.503  C22 YH0 30 
YH0 C23 C24 C 0 1 Y N N N N N 8.940  11.291 112.095 9.569  -0.766 1.042  C23 YH0 31 
YH0 N5  N6  N 0 1 Y N N N N N 7.694  9.711  114.998 6.744  0.153  -0.868 N5  YH0 32 
YH0 H1  H1  H 0 1 N N N N N N 14.379 5.527  123.933 -4.999 1.424  0.135  H1  YH0 33 
YH0 H2  H2  H 0 1 N N N N N N 14.532 4.603  128.900 -9.636 -0.612 -0.051 H2  YH0 34 
YH0 H4  H4  H 0 1 N N N N N N 10.184 6.087  122.613 -1.970 -2.141 -0.196 H4  YH0 35 
YH0 H5  H5  H 0 1 N N N N N N 10.743 6.300  127.847 -6.627 -3.615 -0.347 H5  YH0 36 
YH0 H6  H6  H 0 1 N N N N N N 12.304 5.393  129.546 -8.990 -2.970 -0.279 H6  YH0 37 
YH0 H7  H7  H 0 1 N N N N N N 9.908  9.450  119.484 2.164  -1.022 -0.088 H7  YH0 38 
YH0 H8  H8  H 0 1 N N N N N N 10.732 10.208 114.147 6.891  -1.861 1.501  H8  YH0 39 
YH0 H9  H9  H 0 1 N N N N N N 17.081 4.473  125.045 -9.993 1.177  0.118  H9  YH0 40 
YH0 H10 H10 H 0 1 N N N N N N 15.603 5.265  124.611 -9.569 2.796  0.273  H10 YH0 41 
YH0 H11 H11 H 0 1 N N N N N N 9.765  6.981  120.369 0.420  -1.576 -0.140 H11 YH0 42 
YH0 H12 H12 H 0 1 N N N N N N 13.751 8.509  120.235 -0.573 2.580  0.243  H12 YH0 43 
YH0 H13 H13 H 0 1 N N N N N N 14.168 7.615  122.478 -2.963 2.013  0.193  H13 YH0 44 
YH0 H14 H14 H 0 1 N N N N N N 11.001 10.405 117.015 4.099  0.903  -0.813 H14 YH0 45 
YH0 H15 H15 H 0 1 N N N N N N 9.325  10.652 117.614 4.103  0.744  0.960  H15 YH0 46 
YH0 H16 H16 H 0 1 N N N N N N 8.811  8.305  116.849 4.464  -1.699 0.741  H16 YH0 47 
YH0 H17 H17 H 0 1 N N N N N N 10.428 8.279  116.068 4.460  -1.540 -1.032 H17 YH0 48 
YH0 H18 H18 H 0 1 N N N N N N 5.385  10.496 113.469 8.966  1.647  -1.915 H18 YH0 49 
YH0 H19 H19 H 0 1 N N N N N N 5.666  11.632 111.285 11.203 1.401  -0.966 H19 YH0 50 
YH0 H20 H20 H 0 1 N N N N N N 7.910  12.133 110.421 11.602 -0.133 0.912  H20 YH0 51 
YH0 H21 H21 H 0 1 N N N N N N 9.924  11.521 111.714 9.751  -1.438 1.867  H21 YH0 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YH0 C22 C21 DOUB Y N 1  
YH0 C22 C23 SING Y N 2  
YH0 C21 C20 SING Y N 3  
YH0 C23 C18 DOUB Y N 4  
YH0 C20 C19 DOUB Y N 5  
YH0 C18 C19 SING Y N 6  
YH0 C18 N4  SING Y N 7  
YH0 C19 N5  SING Y N 8  
YH0 N4  C17 SING Y N 9  
YH0 N5  C17 DOUB Y N 10 
YH0 C17 C16 SING N N 11 
YH0 C16 C15 SING N N 12 
YH0 C15 N3  SING N N 13 
YH0 O1  C14 DOUB N N 14 
YH0 N3  C14 SING N N 15 
YH0 C14 C11 SING N N 16 
YH0 C11 C12 DOUB Y N 17 
YH0 C11 C10 SING Y N 18 
YH0 C12 C13 SING Y N 19 
YH0 C10 C9  DOUB Y N 20 
YH0 C13 C8  DOUB Y N 21 
YH0 C9  C8  SING Y N 22 
YH0 C8  C3  SING N N 23 
YH0 C3  N1  SING Y N 24 
YH0 C3  N2  DOUB Y N 25 
YH0 N1  C2  SING Y N 26 
YH0 N2  C4  SING Y N 27 
YH0 N   C   SING N N 28 
YH0 C2  C4  DOUB Y N 29 
YH0 C2  C1  SING Y N 30 
YH0 C4  C5  SING Y N 31 
YH0 C   C1  SING N N 32 
YH0 C   O   DOUB N N 33 
YH0 C1  C7  DOUB Y N 34 
YH0 C5  C6  DOUB Y N 35 
YH0 C7  C6  SING Y N 36 
YH0 N1  H1  SING N N 37 
YH0 C7  H2  SING N N 38 
YH0 C9  H4  SING N N 39 
YH0 C5  H5  SING N N 40 
YH0 C6  H6  SING N N 41 
YH0 N3  H7  SING N N 42 
YH0 N4  H8  SING N N 43 
YH0 N   H9  SING N N 44 
YH0 N   H10 SING N N 45 
YH0 C10 H11 SING N N 46 
YH0 C12 H12 SING N N 47 
YH0 C13 H13 SING N N 48 
YH0 C15 H14 SING N N 49 
YH0 C15 H15 SING N N 50 
YH0 C16 H16 SING N N 51 
YH0 C16 H17 SING N N 52 
YH0 C20 H18 SING N N 53 
YH0 C21 H19 SING N N 54 
YH0 C22 H20 SING N N 55 
YH0 C23 H21 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YH0 SMILES           ACDLabs              12.01 "NC(=O)c1cccc2nc([NH]c12)c1ccc(cc1)C(=O)NCCc1nc2ccccc2[NH]1"                                                                                                                      
YH0 InChI            InChI                1.06  "InChI=1S/C24H20N6O2/c25-22(31)16-4-3-7-19-21(16)30-23(29-19)14-8-10-15(11-9-14)24(32)26-13-12-20-27-17-5-1-2-6-18(17)28-20/h1-11H,12-13H2,(H2,25,31)(H,26,32)(H,27,28)(H,29,30)" 
YH0 InChIKey         InChI                1.06  HKMBTWRJKUMZJX-UHFFFAOYSA-N                                                                                                                                                       
YH0 SMILES_CANONICAL CACTVS               3.385 "NC(=O)c1cccc2nc([nH]c12)c3ccc(cc3)C(=O)NCCc4[nH]c5ccccc5n4"                                                                                                                      
YH0 SMILES           CACTVS               3.385 "NC(=O)c1cccc2nc([nH]c12)c3ccc(cc3)C(=O)NCCc4[nH]c5ccccc5n4"                                                                                                                      
YH0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)CCNC(=O)c3ccc(cc3)c4[nH]c5c(cccc5n4)C(=O)N"                                                                                                                  
YH0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)CCNC(=O)c3ccc(cc3)c4[nH]c5c(cccc5n4)C(=O)N"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YH0 "SYSTEMATIC NAME" ACDLabs              12.01 "2-(4-{[2-(1H-benzimidazol-2-yl)ethyl]carbamoyl}phenyl)-1H-benzimidazole-7-carboxamide"     
YH0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[4-[2-(1~{H}-benzimidazol-2-yl)ethylcarbamoyl]phenyl]-3~{H}-benzimidazole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YH0 "Create component" 2023-02-02 RCSB 
YH0 "Initial release"  2024-02-07 RCSB 
# 
