data_Y10
# 
_chem_comp.id                                    Y10 
_chem_comp.name                                  "(E,2R,3R,4S,5R)-N-(2,3-dihydro-1H-inden-2-yl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H31 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-15 
_chem_comp.pdbx_modified_date                    2012-06-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.475 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y10 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PKD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y10 N    N    N 0 1 N N N 25.024 -3.711 11.194 -2.061 -0.856 -0.498 N    Y10 1  
Y10 O1   O1   O 0 1 N N N 25.592 1.926  15.221 2.354  1.536  0.631  O1   Y10 2  
Y10 O2   O2   O 0 1 N N N 26.373 -1.636 13.352 0.248  0.413  0.088  O2   Y10 3  
Y10 O3   O3   O 0 1 N N N 24.988 -0.668 15.329 2.524  -0.744 -1.110 O3   Y10 4  
Y10 O4   O4   O 0 1 N N N 23.987 -1.890 10.295 -1.973 -2.745 0.663  O4   Y10 5  
Y10 O5   O5   O 0 1 N N N 22.875 -1.299 12.691 0.578  -3.221 0.404  O5   Y10 6  
Y10 C01  C01  C 0 1 N N N 25.849 3.037  10.492 6.420  1.473  -0.211 C01  Y10 7  
Y10 C02  C02  C 0 1 N N N 26.154 2.277  11.763 4.959  1.437  0.157  C02  Y10 8  
Y10 C03  C03  C 0 1 N N N 25.287 2.131  12.776 4.434  0.343  0.651  C03  Y10 9  
Y10 C04  C04  C 0 1 N N R 25.765 1.236  13.913 2.973  0.307  1.019  C04  Y10 10 
Y10 C05  C05  C 0 1 N N S 24.819 0.028  14.046 2.293  -0.857 0.295  C05  Y10 11 
Y10 C06  C06  C 0 1 N N R 25.164 -0.964 12.927 0.789  -0.819 0.569  C06  Y10 12 
Y10 C07  C07  C 0 1 N N R 24.074 -2.046 12.655 0.110  -1.988 -0.147 C07  Y10 13 
Y10 C08  C08  C 0 1 N N N 24.496 3.740  10.512 7.055  0.114  0.089  C08  Y10 14 
Y10 C09  C09  C 0 1 N N N 25.856 2.012  9.361  6.563  1.784  -1.702 C09  Y10 15 
Y10 C10  C10  C 0 1 N N N 26.955 4.074  10.227 7.125  2.557  0.606  C10  Y10 16 
Y10 C11  C11  C 0 1 N N N 24.342 -2.567 11.290 -1.383 -1.891 0.036  C11  Y10 17 
Y10 C12  C12  C 0 1 N N N 25.471 -4.252 9.948  -3.511 -0.759 -0.315 C12  Y10 18 
Y10 C13  C13  C 0 1 N N N 26.163 -5.605 10.241 -4.153 0.067  -1.450 C13  Y10 19 
Y10 C14  C14  C 0 1 Y N N 27.213 -5.704 9.200  -5.286 0.828  -0.795 C14  Y10 20 
Y10 C15  C15  C 0 1 Y N N 27.442 -4.488 8.619  -5.112 0.835  0.576  C15  Y10 21 
Y10 C16  C16  C 0 1 N N N 26.502 -3.437 9.184  -3.852 0.078  0.937  C16  Y10 22 
Y10 C17  C17  C 0 1 Y N N 27.943 -6.894 8.875  -6.381 1.464  -1.354 C17  Y10 23 
Y10 C18  C18  C 0 1 Y N N 28.953 -6.741 7.884  -7.300 2.105  -0.546 C18  Y10 24 
Y10 C19  C19  C 0 1 Y N N 29.124 -5.481 7.272  -7.127 2.112  0.825  C19  Y10 25 
Y10 C20  C20  C 0 1 Y N N 28.391 -4.308 7.593  -6.035 1.478  1.385  C20  Y10 26 
Y10 C21  C21  C 0 1 N N N 21.735 -2.177 12.785 1.472  -3.938 -0.451 C21  Y10 27 
Y10 HN   HN   H 0 1 N N N 25.232 -4.213 12.033 -1.588 -0.174 -0.999 HN   Y10 28 
Y10 HO1  HO1  H 0 1 N N N 25.893 1.359  15.921 2.405  1.720  -0.317 HO1  Y10 29 
Y10 HO2  HO2  H 0 1 N N N 26.634 -2.267 12.691 0.368  0.551  -0.861 HO2  Y10 30 
Y10 HO3  HO3  H 0 1 N N N 24.389 -1.404 15.372 2.184  0.072  -1.501 HO3  Y10 31 
Y10 H02  H02  H 0 1 N N N 27.129 1.824  11.861 4.344  2.313  0.013  H02  Y10 32 
Y10 H03  H03  H 0 1 N N N 24.320 2.613  12.785 5.049  -0.533 0.795  H03  Y10 33 
Y10 H04  H04  H 0 1 N N N 26.804 0.910  13.756 2.873  0.174  2.096  H04  Y10 34 
Y10 H05  H05  H 0 1 N N N 23.779 0.365  13.928 2.705  -1.799 0.657  H05  Y10 35 
Y10 H06  H06  H 0 1 N N N 25.346 -0.406 11.997 0.613  -0.899 1.642  H06  Y10 36 
Y10 H07  H07  H 0 1 N N N 24.112 -2.841 13.414 0.349  -1.951 -1.210 H07  Y10 37 
Y10 H08  H08  H 0 1 N N N 24.480 4.482  11.324 6.552  -0.659 -0.493 H08  Y10 38 
Y10 H08A H08A H 0 0 N N N 24.332 4.247  9.549  8.111  0.140  -0.177 H08A Y10 39 
Y10 H08B H08B H 0 0 N N N 23.700 2.999  10.677 6.953  -0.108 1.152  H08B Y10 40 
Y10 H09  H09  H 0 1 N N N 25.069 1.264  9.538  6.060  1.012  -2.284 H09  Y10 41 
Y10 H09A H09A H 0 0 N N N 25.669 2.521  8.404  6.110  2.753  -1.916 H09A Y10 42 
Y10 H09B H09B H 0 0 N N N 26.835 1.512  9.325  7.619  1.810  -1.968 H09B Y10 43 
Y10 H10  H10  H 0 1 N N N 26.961 4.819  11.036 8.182  2.583  0.340  H10  Y10 44 
Y10 H10A H10A H 0 0 N N N 27.931 3.568  10.188 6.673  3.525  0.392  H10A Y10 45 
Y10 H10B H10B H 0 0 N N N 26.764 4.576  9.267  7.023  2.335  1.669  H10B Y10 46 
Y10 H12  H12  H 0 1 N N N 24.610 -4.438 9.289  -3.960 -1.750 -0.256 H12  Y10 47 
Y10 H13  H13  H 0 1 N N N 26.608 -5.607 11.247 -3.425 0.761  -1.872 H13  Y10 48 
Y10 H13A H13A H 0 0 N N N 25.448 -6.436 10.155 -4.539 -0.593 -2.227 H13A Y10 49 
Y10 H16  H16  H 0 1 N N N 26.027 -2.860 8.377  -4.033 -0.575 1.790  H16  Y10 50 
Y10 H16A H16A H 0 0 N N N 27.038 -2.752 9.857  -3.043 0.775  1.157  H16A Y10 51 
Y10 H17  H17  H 0 1 N N N 27.740 -7.843 9.350  -6.517 1.460  -2.425 H17  Y10 52 
Y10 H18  H18  H 0 1 N N N 29.579 -7.576 7.605  -8.153 2.601  -0.986 H18  Y10 53 
Y10 H19  H19  H 0 1 N N N 29.872 -5.403 6.497  -7.844 2.612  1.458  H19  Y10 54 
Y10 H20  H20  H 0 1 N N N 28.547 -3.362 7.095  -5.900 1.483  2.456  H20  Y10 55 
Y10 H21  H21  H 0 1 N N N 20.812 -1.579 12.812 2.300  -3.289 -0.736 H21  Y10 56 
Y10 H21A H21A H 0 0 N N N 21.714 -2.845 11.911 1.857  -4.810 0.076  H21A Y10 57 
Y10 H21B H21B H 0 0 N N N 21.810 -2.777 13.704 0.938  -4.260 -1.345 H21B Y10 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y10 C12 N    SING N N 1  
Y10 N   C11  SING N N 2  
Y10 N   HN   SING N N 3  
Y10 C04 O1   SING N N 4  
Y10 O1  HO1  SING N N 5  
Y10 C06 O2   SING N N 6  
Y10 O2  HO2  SING N N 7  
Y10 C05 O3   SING N N 8  
Y10 O3  HO3  SING N N 9  
Y10 O4  C11  DOUB N N 10 
Y10 C07 O5   SING N N 11 
Y10 O5  C21  SING N N 12 
Y10 C09 C01  SING N N 13 
Y10 C10 C01  SING N N 14 
Y10 C01 C08  SING N N 15 
Y10 C01 C02  SING N N 16 
Y10 C02 C03  DOUB N E 17 
Y10 C02 H02  SING N N 18 
Y10 C03 C04  SING N N 19 
Y10 C03 H03  SING N N 20 
Y10 C04 C05  SING N N 21 
Y10 C04 H04  SING N N 22 
Y10 C06 C05  SING N N 23 
Y10 C05 H05  SING N N 24 
Y10 C07 C06  SING N N 25 
Y10 C06 H06  SING N N 26 
Y10 C11 C07  SING N N 27 
Y10 C07 H07  SING N N 28 
Y10 C08 H08  SING N N 29 
Y10 C08 H08A SING N N 30 
Y10 C08 H08B SING N N 31 
Y10 C09 H09  SING N N 32 
Y10 C09 H09A SING N N 33 
Y10 C09 H09B SING N N 34 
Y10 C10 H10  SING N N 35 
Y10 C10 H10A SING N N 36 
Y10 C10 H10B SING N N 37 
Y10 C16 C12  SING N N 38 
Y10 C12 C13  SING N N 39 
Y10 C12 H12  SING N N 40 
Y10 C14 C13  SING N N 41 
Y10 C13 H13  SING N N 42 
Y10 C13 H13A SING N N 43 
Y10 C15 C14  DOUB Y N 44 
Y10 C17 C14  SING Y N 45 
Y10 C20 C15  SING Y N 46 
Y10 C15 C16  SING N N 47 
Y10 C16 H16  SING N N 48 
Y10 C16 H16A SING N N 49 
Y10 C18 C17  DOUB Y N 50 
Y10 C17 H17  SING N N 51 
Y10 C19 C18  SING Y N 52 
Y10 C18 H18  SING N N 53 
Y10 C19 C20  DOUB Y N 54 
Y10 C19 H19  SING N N 55 
Y10 C20 H20  SING N N 56 
Y10 C21 H21  SING N N 57 
Y10 C21 H21A SING N N 58 
Y10 C21 H21B SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y10 SMILES           ACDLabs              12.01 "O=C(NC2Cc1ccccc1C2)C(OC)C(O)C(O)C(O)/C=C/C(C)(C)C"                                                                                                                          
Y10 InChI            InChI                1.03  "InChI=1S/C21H31NO5/c1-21(2,3)10-9-16(23)17(24)18(25)19(27-4)20(26)22-15-11-13-7-5-6-8-14(13)12-15/h5-10,15-19,23-25H,11-12H2,1-4H3,(H,22,26)/b10-9+/t16-,17+,18-,19-/m1/s1" 
Y10 InChIKey         InChI                1.03  XTHOIFAGDPGJPZ-PQQJDVFMSA-N                                                                                                                                                  
Y10 SMILES_CANONICAL CACTVS               3.370 "CO[C@H]([C@H](O)[C@@H](O)[C@H](O)/C=C/C(C)(C)C)C(=O)NC1Cc2ccccc2C1"                                                                                                         
Y10 SMILES           CACTVS               3.370 "CO[CH]([CH](O)[CH](O)[CH](O)C=CC(C)(C)C)C(=O)NC1Cc2ccccc2C1"                                                                                                                
Y10 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NC1Cc2ccccc2C1)OC)O)O)O"                                                                                                         
Y10 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(C)C=CC(C(C(C(C(=O)NC1Cc2ccccc2C1)OC)O)O)O"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y10 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4S,5R,6E)-N-(2,3-dihydro-1H-inden-2-yl)-3,4,5-trihydroxy-2-methoxy-8,8-dimethylnon-6-enamide (non-preferred name)" 
Y10 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E,2R,3R,4S,5R)-N-(2,3-dihydro-1H-inden-2-yl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide"                   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y10 "Create component"     2010-11-15 RCSB 
Y10 "Modify aromatic_flag" 2011-06-04 RCSB 
Y10 "Modify descriptor"    2011-06-04 RCSB 
Y10 "Modify name"          2012-06-17 RCSB 
# 
