data_XS0
# 
_chem_comp.id                                    XS0 
_chem_comp.name                                  namodenoson 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H18 Cl I N6 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2~{S},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide; CF102; Cl-IB-MECA" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-09 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        544.731 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XS0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8X17 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XS0 N12  N1  N  0 1 Y N N N N N 125.649 98.491  82.181 -1.256  -0.698 0.910  N12  XS0 1  
XS0 C13  C1  C  0 1 Y N N N N N 125.240 97.243  81.856 -1.028  0.601  0.599  C13  XS0 2  
XS0 C21  C2  C  0 1 N N N N N N 126.890 96.205  78.816 2.546   1.771  0.775  C21  XS0 3  
XS0 C22  C3  C  0 1 Y N N N N N 127.428 94.744  78.412 3.772   0.979  1.151  C22  XS0 4  
XS0 C24  C4  C  0 1 Y N N N N N 127.089 92.431  77.971 5.615   -0.414 0.521  C24  XS0 5  
XS0 C26  C5  C  0 1 Y N N N N N 129.303 93.371  77.785 5.305   0.197  2.816  C26  XS0 6  
XS0 CL19 CL1 CL 0 0 N N N N N N 122.998 93.280  81.468 -1.341  4.854  -0.566 CL19 XS0 7  
XS0 C01  C6  C  0 1 N N N N N N 122.184 103.567 86.692 -9.082  -3.789 0.403  C01  XS0 8  
XS0 N02  N2  N  0 1 N N N N N N 121.540 102.230 86.255 -8.469  -2.496 0.090  N02  XS0 9  
XS0 C03  C7  C  0 1 N N N N N N 122.381 101.121 85.780 -7.260  -2.183 0.595  C03  XS0 10 
XS0 O04  O1  O  0 1 N N N N N N 123.570 101.269 85.729 -6.679  -2.972 1.310  O04  XS0 11 
XS0 C05  C8  C  0 1 N N S N N N 121.791 99.833  85.338 -6.629  -0.852 0.273  C05  XS0 12 
XS0 C06  C9  C  0 1 N N S N N N 122.189 98.660  86.336 -6.313  -0.758 -1.236 C06  XS0 13 
XS0 C07  C10 C  0 1 N N R N N N 122.550 97.658  85.610 -4.974  0.009  -1.292 C07  XS0 14 
XS0 C08  C11 C  0 1 N N R N N N 122.607 98.158  84.049 -4.639  0.288  0.190  C08  XS0 15 
XS0 O09  O2  O  0 1 N N N N N N 122.538 99.478  84.054 -5.347  -0.732 0.927  O09  XS0 16 
XS0 N10  N3  N  0 1 Y N N N N N 123.798 98.071  83.202 -3.196  0.172  0.417  N10  XS0 17 
XS0 C11  C12 C  0 1 Y N N N N N 124.778 98.986  83.009 -2.528  -0.951 0.804  C11  XS0 18 
XS0 C14  C13 C  0 1 Y N N N N N 125.745 96.205  81.032 0.116   1.416  0.539  C14  XS0 19 
XS0 N15  N4  N  0 1 Y N N N N N 125.101 95.084  80.917 -0.031  2.688  0.183  N15  XS0 20 
XS0 C16  C14 C  0 1 Y N N N N N 123.959 94.901  81.592 -1.221  3.184  -0.109 C16  XS0 21 
XS0 N17  N5  N  0 1 Y N N N N N 123.461 95.840  82.367 -2.319  2.457  -0.066 N17  XS0 22 
XS0 C18  C15 C  0 1 Y N N N N N 124.088 97.007  82.496 -2.269  1.174  0.279  C18  XS0 23 
XS0 N20  N6  N  0 1 N N N N N N 126.974 96.424  80.311 1.366   0.906  0.843  N20  XS0 24 
XS0 C23  C16 C  0 1 Y N N N N N 126.576 93.664  78.326 4.490   0.312  0.176  C23  XS0 25 
XS0 C25  C17 C  0 1 Y N N N N N 128.443 92.272  77.699 6.021   -0.474 1.842  C25  XS0 26 
XS0 C27  C18 C  0 1 Y N N N N N 128.806 94.582  78.128 4.181   0.924  2.471  C27  XS0 27 
XS0 O29  O3  O  0 1 N N N N N N 121.652 96.553  85.670 -5.129  1.235  -2.010 O29  XS0 28 
XS0 O30  O4  O  0 1 N N N N N N 121.101 98.324  87.138 -7.337  -0.030 -1.917 O30  XS0 29 
XS0 I28  I1  I  0 1 N N N N N N 125.837 90.734  77.820 6.703   -1.425 -0.956 I28  XS0 30 
XS0 H1   H1  H  0 1 N N N N N N 127.500 96.966  78.307 2.426   2.605  1.467  H1   XS0 31 
XS0 H2   H2  H  0 1 N N N N N N 125.842 96.302  78.497 2.658   2.154  -0.239 H2   XS0 32 
XS0 H3   H3  H  0 1 N N N N N N 130.357 93.254  77.579 5.625   0.154  3.847  H3   XS0 33 
XS0 H4   H4  H  0 1 N N N N N N 121.397 104.266 87.012 -9.217  -3.875 1.481  H4   XS0 34 
XS0 H5   H5  H  0 1 N N N N N N 122.875 103.385 87.528 -10.051 -3.861 -0.092 H5   XS0 35 
XS0 H6   H6  H  0 1 N N N N N N 122.738 104.001 85.846 -8.434  -4.592 0.052  H6   XS0 36 
XS0 H7   H7  H  0 1 N N N N N N 120.547 102.119 86.296 -8.934  -1.864 -0.482 H7   XS0 37 
XS0 H8   H8  H  0 1 N N N N N N 120.702 99.884  85.190 -7.288  -0.038 0.575  H8   XS0 38 
XS0 H9   H9  H  0 1 N N N N N N 123.017 99.027  86.961 -6.204  -1.754 -1.666 H9   XS0 39 
XS0 H10  H10 H  0 1 N N N N N N 123.563 97.318  85.870 -4.200  -0.606 -1.752 H10  XS0 40 
XS0 H11  H11 H  0 1 N N N N N N 121.750 97.706  83.527 -4.991  1.278  0.479  H11  XS0 41 
XS0 H12  H12 H  0 1 N N N N N N 124.827 99.963  83.466 -2.986  -1.911 0.994  H12  XS0 42 
XS0 H13  H13 H  0 1 N N N N N N 127.663 95.799  80.677 1.460   -0.024 1.102  H13  XS0 43 
XS0 H14  H14 H  0 1 N N N N N N 125.522 93.780  78.533 4.172   0.359  -0.855 H14  XS0 44 
XS0 H15  H15 H  0 1 N N N N N N 128.829 91.302  77.422 6.899   -1.041 2.112  H15  XS0 45 
XS0 H16  H16 H  0 1 N N N N N N 129.467 95.434  78.186 3.622   1.448  3.232  H16  XS0 46 
XS0 H17  H17 H  0 1 N N N N N N 121.596 96.238  86.565 -5.398  1.120  -2.931 H17  XS0 47 
XS0 H18  H18 H  0 1 N N N N N N 121.348 97.623  87.730 -8.212  -0.437 -1.862 H18  XS0 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XS0 C25  C26 DOUB Y N 1  
XS0 C25  C24 SING Y N 2  
XS0 C26  C27 SING Y N 3  
XS0 I28  C24 SING N N 4  
XS0 C24  C23 DOUB Y N 5  
XS0 C27  C22 DOUB Y N 6  
XS0 C23  C22 SING Y N 7  
XS0 C22  C21 SING N N 8  
XS0 C21  N20 SING N N 9  
XS0 N20  C14 SING N N 10 
XS0 N15  C14 DOUB Y N 11 
XS0 N15  C16 SING Y N 12 
XS0 C14  C13 SING Y N 13 
XS0 CL19 C16 SING N N 14 
XS0 C16  N17 DOUB Y N 15 
XS0 C13  N12 SING Y N 16 
XS0 C13  C18 DOUB Y N 17 
XS0 N12  C11 DOUB Y N 18 
XS0 N17  C18 SING Y N 19 
XS0 C18  N10 SING Y N 20 
XS0 C11  N10 SING Y N 21 
XS0 N10  C08 SING N N 22 
XS0 C08  O09 SING N N 23 
XS0 C08  C07 SING N N 24 
XS0 O09  C05 SING N N 25 
XS0 C05  C03 SING N N 26 
XS0 C05  C06 SING N N 27 
XS0 C07  O29 SING N N 28 
XS0 C07  C06 SING N N 29 
XS0 O04  C03 DOUB N N 30 
XS0 C03  N02 SING N N 31 
XS0 N02  C01 SING N N 32 
XS0 C06  O30 SING N N 33 
XS0 C21  H1  SING N N 34 
XS0 C21  H2  SING N N 35 
XS0 C26  H3  SING N N 36 
XS0 C01  H4  SING N N 37 
XS0 C01  H5  SING N N 38 
XS0 C01  H6  SING N N 39 
XS0 N02  H7  SING N N 40 
XS0 C05  H8  SING N N 41 
XS0 C06  H9  SING N N 42 
XS0 C07  H10 SING N N 43 
XS0 C08  H11 SING N N 44 
XS0 C11  H12 SING N N 45 
XS0 N20  H13 SING N N 46 
XS0 C23  H14 SING N N 47 
XS0 C25  H15 SING N N 48 
XS0 C27  H16 SING N N 49 
XS0 O29  H17 SING N N 50 
XS0 O30  H18 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XS0 InChI            InChI                1.06  "InChI=1S/C18H18ClIN6O4/c1-21-16(29)13-11(27)12(28)17(30-13)26-7-23-10-14(24-18(19)25-15(10)26)22-6-8-3-2-4-9(20)5-8/h2-5,7,11-13,17,27-28H,6H2,1H3,(H,21,29)(H,22,24,25)/t11-,12+,13-,17+/m0/s1" 
XS0 InChIKey         InChI                1.06  IPSYPUKKXMNCNQ-PFHKOEEOSA-N                                                                                                                                                                       
XS0 SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCc4cccc(I)c4)nc(Cl)nc23"                                                                                                                           
XS0 SMILES           CACTVS               3.385 "CNC(=O)[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCc4cccc(I)c4)nc(Cl)nc23"                                                                                                                                
XS0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2nc(nc3NCc4cccc(c4)I)Cl)O)O"                                                                                                                          
XS0 SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1C(C(C(O1)n2cnc3c2nc(nc3NCc4cccc(c4)I)Cl)O)O"                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           XS0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XS0 "Create component" 2023-11-09 PDBJ 
XS0 "Initial release"  2024-04-24 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 XS0 "(2~{S},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide" PDB    ? 
2 XS0 CF102                                                                                                                                     CHEMBL ? 
3 XS0 Cl-IB-MECA                                                                                                                                CHEMBL ? 
# 
