data_XO0
# 
_chem_comp.id                                    XO0 
_chem_comp.name                                  "7-[(1~{S})-1-[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H32 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        644.673 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XO0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PAA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XO0 C10  C1  C 0 1 N N N N N N -30.539 -14.514 16.113 7.456   1.008  -2.186 C10  XO0 1  
XO0 C12  C2  C 0 1 N N N N N N -31.498 -15.615 14.010 9.356   0.140  -0.836 C12  XO0 2  
XO0 C15  C3  C 0 1 Y N N N N N -33.472 -14.457 13.496 9.618   1.815  0.725  C15  XO0 3  
XO0 C16  C4  C 0 1 Y N N N N N -34.631 -14.096 12.827 10.158  2.484  1.811  C16  XO0 4  
XO0 C22  C5  C 0 1 Y N N N N N -29.233 -12.948 14.605 5.183   1.068  -1.141 C22  XO0 5  
XO0 C20  C6  C 0 1 N N N N N N -32.665 -13.987 14.755 8.519   2.100  -0.221 C20  XO0 6  
XO0 C19  C7  C 0 1 Y N N N N N -33.073 -16.244 11.858 11.210  0.021  1.038  C19  XO0 7  
XO0 C14  C8  C 0 1 Y N N N N N -32.685 -15.553 12.990 10.150  0.569  0.334  C14  XO0 8  
XO0 C24  C9  C 0 1 Y N N N N N -22.652 -12.878 13.318 -0.690  -0.734 0.579  C24  XO0 9  
XO0 C08  C10 C 0 1 Y N N N N N -27.993 -14.296 16.142 6.088   -1.053 -1.807 C08  XO0 10 
XO0 C06  C11 C 0 1 Y N N N N N -26.835 -12.781 14.670 3.916   -0.942 -0.788 C06  XO0 11 
XO0 C04  C12 C 0 1 N N N N N N -25.510 -12.193 14.202 2.691   -1.615 -0.309 C04  XO0 12 
XO0 C27  C13 C 0 1 Y N N N N N -22.397 -10.768 10.446 -3.770  -2.628 0.244  C27  XO0 13 
XO0 C02  C14 C 0 1 N N S N N N -23.159 -12.107 14.539 0.524   -1.620 0.692  C02  XO0 14 
XO0 C01  C15 C 0 1 N N N N N N -22.265 -12.276 15.766 0.713   -2.044 2.150  C01  XO0 15 
XO0 C07  C16 C 0 1 Y N N N N N -26.809 -13.739 15.673 4.948   -1.688 -1.362 C07  XO0 16 
XO0 C09  C17 C 0 1 Y N N N N N -29.213 -13.910 15.604 6.207   0.321  -1.697 C09  XO0 17 
XO0 C17  C18 C 0 1 Y N N N N N -35.027 -14.794 11.675 11.219  1.923  2.506  C17  XO0 18 
XO0 C18  C19 C 0 1 Y N N N N N -34.245 -15.876 11.188 11.741  0.702  2.123  C18  XO0 19 
XO0 C23  C20 C 0 1 Y N N N N N -28.053 -12.382 14.142 4.039   0.445  -0.687 C23  XO0 20 
XO0 C25  C21 C 0 1 Y N N N N N -22.478 -12.216 12.083 -1.956  -1.299 0.445  C25  XO0 21 
XO0 C28  C22 C 0 1 N N N N N N -22.600 -9.463  9.712  -4.590  -3.839 0.143  C28  XO0 22 
XO0 C31  C23 C 0 1 Y N N N N N -21.946 -11.979 9.921  -4.248  -1.330 0.217  C31  XO0 23 
XO0 C32  C24 C 0 1 Y N N N N N -21.494 -12.243 8.496  -5.660  -0.908 0.084  C32  XO0 24 
XO0 C33  C25 C 0 1 Y N N N N N -20.768 -11.280 7.798  -6.590  -1.211 1.084  C33  XO0 25 
XO0 C34  C26 C 0 1 Y N N N N N -20.401 -11.575 6.491  -7.898  -0.793 0.911  C34  XO0 26 
XO0 C35  C27 C 0 1 Y N N N N N -20.740 -12.790 5.939  -8.241  -0.097 -0.233 C35  XO0 27 
XO0 C36  C28 C 0 1 N N N N N N -20.313 -13.079 4.492  -9.664  0.360  -0.425 C36  XO0 28 
XO0 C38  C29 C 0 1 N N N N N N -18.343 -13.740 3.310  -11.214 2.148  0.093  C38  XO0 29 
XO0 C39  C30 C 0 1 N N N N N N -17.244 -14.790 3.126  -11.314 3.574  0.640  C39  XO0 30 
XO0 C41  C31 C 0 1 N N N N N N -18.429 -16.313 4.442  -9.150  4.087  -0.250 C41  XO0 31 
XO0 C42  C32 C 0 1 N N N N N N -19.601 -15.339 4.537  -9.029  2.666  -0.806 C42  XO0 32 
XO0 C44  C33 C 0 1 Y N N N N N -21.809 -13.441 7.883  -6.085  -0.196 -1.039 C44  XO0 33 
XO0 C45  C34 C 0 1 Y N N N N N -22.006 -12.903 10.984 -3.078  -0.454 0.347  C45  XO0 34 
XO0 C46  C35 C 0 1 Y N N N N N -21.685 -14.262 11.084 -2.912  0.933  0.386  C46  XO0 35 
XO0 C47  C36 C 0 1 Y N N N N N -21.849 -14.913 12.294 -1.661  1.463  0.519  C47  XO0 36 
XO0 C48  C37 C 0 1 Y N N N N N -22.329 -14.227 13.409 -0.550  0.635  0.615  C48  XO0 37 
XO0 N11  N1  N 0 1 N N N N N N -31.509 -14.685 15.032 8.431   1.082  -1.095 N11  XO0 38 
XO0 N26  N2  N 0 1 Y N N N N N -22.703 -10.931 11.735 -2.398  -2.599 0.380  N26  XO0 39 
XO0 N37  N3  N 0 1 N N N N N N -19.163 -13.989 4.454  -9.801  1.746  0.042  N37  XO0 40 
XO0 N43  N4  N 0 1 Y N N N N N -21.435 -13.679 6.629  -7.342  0.175  -1.160 N43  XO0 41 
XO0 O03  O1  O 0 1 N N N N N N -24.423 -12.590 14.949 1.698   -0.892 0.243  O03  XO0 42 
XO0 O05  O2  O 0 1 N N N N N N -25.387 -11.441 13.272 2.580   -2.820 -0.413 O05  XO0 43 
XO0 O13  O3  O 0 1 N N N N N N -30.641 -16.413 13.905 9.516   -0.888 -1.463 O13  XO0 44 
XO0 O21  O4  O 0 1 N N N N N N -33.029 -13.084 15.434 7.814   3.089  -0.211 O21  XO0 45 
XO0 O29  O5  O 0 1 N N N N N N -23.039 -9.515  8.518  -5.797  -3.748 0.026  O29  XO0 46 
XO0 O30  O6  O 0 1 N N N N N N -22.445 -8.338  10.295 -4.006  -5.054 0.182  O30  XO0 47 
XO0 O40  O7  O 0 1 N N N N N N -17.742 -16.124 3.212  -10.532 4.449  -0.178 O40  XO0 48 
XO0 H101 H1  H 0 0 N N N N N N -30.967 -13.843 16.873 7.881   0.442  -3.016 H101 XO0 49 
XO0 H102 H2  H 0 0 N N N N N N -30.333 -15.496 16.565 7.209   2.015  -2.522 H102 XO0 50 
XO0 H161 H3  H 0 0 N N N N N N -35.231 -13.276 13.193 9.755   3.439  2.115  H161 XO0 51 
XO0 H221 H4  H 0 0 N N N N N N -30.177 -12.636 14.183 5.282   2.140  -1.059 H221 XO0 52 
XO0 H191 H5  H 0 0 N N N N N N -32.474 -17.065 11.492 11.621  -0.933 0.743  H191 XO0 53 
XO0 H081 H6  H 0 0 N N N N N N -27.964 -15.034 16.930 6.891   -1.630 -2.243 H081 XO0 54 
XO0 H021 H7  H 0 0 N N N N N N -23.219 -11.038 14.286 0.387   -2.506 0.071  H021 XO0 55 
XO0 H013 H8  H 0 0 N N N N N N -22.681 -11.700 16.606 0.851   -1.158 2.770  H013 XO0 56 
XO0 H011 H9  H 0 0 N N N N N N -22.216 -13.340 16.040 -0.168  -2.590 2.487  H011 XO0 57 
XO0 H012 H10 H 0 0 N N N N N N -21.254 -11.909 15.536 1.591   -2.684 2.231  H012 XO0 58 
XO0 H071 H11 H 0 0 N N N N N N -25.864 -14.054 16.091 4.853   -2.760 -1.456 H071 XO0 59 
XO0 H171 H12 H 0 0 N N N N N N -35.930 -14.507 11.157 11.641  2.445  3.353  H171 XO0 60 
XO0 H181 H13 H 0 0 N N N N N N -34.554 -16.413 10.303 12.566  0.275  2.672  H181 XO0 61 
XO0 H231 H14 H 0 0 N N N N N N -28.084 -11.629 13.368 3.241   1.029  -0.252 H231 XO0 62 
XO0 H331 H15 H 0 0 N N N N N N -20.501 -10.339 8.256  -6.295  -1.757 1.968  H331 XO0 63 
XO0 H341 H16 H 0 0 N N N N N N -19.850 -10.852 5.908  -8.644  -1.009 1.662  H341 XO0 64 
XO0 H362 H17 H 0 0 N N N N N N -20.039 -12.133 4.002  -9.924  0.305  -1.482 H362 XO0 65 
XO0 H361 H18 H 0 0 N N N N N N -21.154 -13.540 3.954  -10.333 -0.284 0.147  H361 XO0 66 
XO0 H381 H19 H 0 0 N N N N N N -17.870 -12.753 3.425  -11.762 1.469  0.747  H381 XO0 67 
XO0 H382 H20 H 0 0 N N N N N N -18.981 -13.739 2.414  -11.640 2.111  -0.910 H382 XO0 68 
XO0 H391 H21 H 0 0 N N N N N N -16.484 -14.646 3.908  -12.355 3.897  0.626  H391 XO0 69 
XO0 H392 H22 H 0 0 N N N N N N -16.783 -14.649 2.137  -10.938 3.599  1.663  H392 XO0 70 
XO0 H412 H23 H 0 0 N N N N N N -18.807 -17.345 4.494  -8.711  4.127  0.747  H412 XO0 71 
XO0 H411 H24 H 0 0 N N N N N N -17.737 -16.133 5.278  -8.626  4.781  -0.907 H411 XO0 72 
XO0 H421 H25 H 0 0 N N N N N N -20.300 -15.539 3.712  -9.419  2.638  -1.823 H421 XO0 73 
XO0 H422 H26 H 0 0 N N N N N N -20.115 -15.490 5.498  -7.981  2.365  -0.810 H422 XO0 74 
XO0 H441 H27 H 0 0 N N N N N N -22.364 -14.191 8.427  -5.377  0.048  -1.817 H441 XO0 75 
XO0 H461 H28 H 0 0 N N N N N N -21.312 -14.798 10.224 -3.771  1.583  0.311  H461 XO0 76 
XO0 H471 H29 H 0 0 N N N N N N -21.603 -15.961 12.375 -1.534  2.536  0.549  H471 XO0 77 
XO0 H481 H30 H 0 0 N N N N N N -22.450 -14.746 14.348 0.433   1.070  0.724  H481 XO0 78 
XO0 H261 H31 H 0 0 N N N N N N -23.044 -10.216 12.345 -1.827  -3.382 0.425  H261 XO0 79 
XO0 H2   H33 H 0 1 N N N N N N -22.701 -7.638  9.706  -4.627  -5.792 0.108  H2   XO0 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XO0 C39 O40  SING N N 1  
XO0 C39 C38  SING N N 2  
XO0 O40 C41  SING N N 3  
XO0 C38 N37  SING N N 4  
XO0 C41 C42  SING N N 5  
XO0 N37 C36  SING N N 6  
XO0 N37 C42  SING N N 7  
XO0 C36 C35  SING N N 8  
XO0 C35 C34  DOUB Y N 9  
XO0 C35 N43  SING Y N 10 
XO0 C34 C33  SING Y N 11 
XO0 N43 C44  DOUB Y N 12 
XO0 C33 C32  DOUB Y N 13 
XO0 C44 C32  SING Y N 14 
XO0 C32 C31  SING N N 15 
XO0 O29 C28  DOUB N N 16 
XO0 C28 O30  SING N N 17 
XO0 C28 C27  SING N N 18 
XO0 C31 C27  DOUB Y N 19 
XO0 C31 C45  SING Y N 20 
XO0 C27 N26  SING Y N 21 
XO0 C45 C46  DOUB Y N 22 
XO0 C45 C25  SING Y N 23 
XO0 C46 C47  SING Y N 24 
XO0 C18 C17  DOUB Y N 25 
XO0 C18 C19  SING Y N 26 
XO0 C17 C16  SING Y N 27 
XO0 N26 C25  SING Y N 28 
XO0 C19 C14  DOUB Y N 29 
XO0 C25 C24  DOUB Y N 30 
XO0 C47 C48  DOUB Y N 31 
XO0 C16 C15  DOUB Y N 32 
XO0 C14 C15  SING Y N 33 
XO0 C14 C12  SING N N 34 
XO0 O05 C04  DOUB N N 35 
XO0 C24 C48  SING Y N 36 
XO0 C24 C02  SING N N 37 
XO0 C15 C20  SING N N 38 
XO0 O13 C12  DOUB N N 39 
XO0 C12 N11  SING N N 40 
XO0 C23 C22  DOUB Y N 41 
XO0 C23 C06  SING Y N 42 
XO0 C04 C06  SING N N 43 
XO0 C04 O03  SING N N 44 
XO0 C02 O03  SING N N 45 
XO0 C02 C01  SING N N 46 
XO0 C22 C09  SING Y N 47 
XO0 C06 C07  DOUB Y N 48 
XO0 C20 N11  SING N N 49 
XO0 C20 O21  DOUB N N 50 
XO0 N11 C10  SING N N 51 
XO0 C09 C10  SING N N 52 
XO0 C09 C08  DOUB Y N 53 
XO0 C07 C08  SING Y N 54 
XO0 C10 H101 SING N N 55 
XO0 C10 H102 SING N N 56 
XO0 C16 H161 SING N N 57 
XO0 C22 H221 SING N N 58 
XO0 C19 H191 SING N N 59 
XO0 C08 H081 SING N N 60 
XO0 C02 H021 SING N N 61 
XO0 C01 H013 SING N N 62 
XO0 C01 H011 SING N N 63 
XO0 C01 H012 SING N N 64 
XO0 C07 H071 SING N N 65 
XO0 C17 H171 SING N N 66 
XO0 C18 H181 SING N N 67 
XO0 C23 H231 SING N N 68 
XO0 C33 H331 SING N N 69 
XO0 C34 H341 SING N N 70 
XO0 C36 H362 SING N N 71 
XO0 C36 H361 SING N N 72 
XO0 C38 H381 SING N N 73 
XO0 C38 H382 SING N N 74 
XO0 C39 H391 SING N N 75 
XO0 C39 H392 SING N N 76 
XO0 C41 H412 SING N N 77 
XO0 C41 H411 SING N N 78 
XO0 C42 H421 SING N N 79 
XO0 C42 H422 SING N N 80 
XO0 C44 H441 SING N N 81 
XO0 C46 H461 SING N N 82 
XO0 C47 H471 SING N N 83 
XO0 C48 H481 SING N N 84 
XO0 N26 H261 SING N N 85 
XO0 O30 H2   SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XO0 InChI            InChI                1.06  "InChI=1S/C37H32N4O7/c1-22(48-37(46)24-11-9-23(10-12-24)20-41-34(42)28-5-2-3-6-29(28)35(41)43)27-7-4-8-30-31(33(36(44)45)39-32(27)30)25-13-14-26(38-19-25)21-40-15-17-47-18-16-40/h2-14,19,22,39H,15-18,20-21H2,1H3,(H,44,45)/t22-/m0/s1" 
XO0 InChIKey         InChI                1.06  ZFOWOVVBLHBZQZ-QFIPXVFZSA-N                                                                                                                                                                                                               
XO0 SMILES_CANONICAL CACTVS               3.385 "C[C@H](OC(=O)c1ccc(CN2C(=O)c3ccccc3C2=O)cc1)c4cccc5c4[nH]c(C(O)=O)c5c6ccc(CN7CCOCC7)nc6"                                                                                                                                                 
XO0 SMILES           CACTVS               3.385 "C[CH](OC(=O)c1ccc(CN2C(=O)c3ccccc3C2=O)cc1)c4cccc5c4[nH]c(C(O)=O)c5c6ccc(CN7CCOCC7)nc6"                                                                                                                                                  
XO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN6C(=O)c7ccccc7C6=O"                                                                                                                                                
XO0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN6C(=O)c7ccccc7C6=O"                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           XO0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XO0 "Create component" 2023-06-08 PDBE 
XO0 "Initial release"  2024-06-26 RCSB 
# 
