data_X50
# 
_chem_comp.id                                    X50 
_chem_comp.name                                  "(3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H30 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-31 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X50 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P73 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X50 C10 C1  C 0 1 N N N N N N 158.842 138.888 122.997 3.327  1.648  -0.072 C10 X50 1  
X50 C13 C2  C 0 1 Y N N N N N 158.226 141.681 125.558 6.816  2.399  1.159  C13 X50 2  
X50 C15 C3  C 0 1 Y N N N N N 160.535 141.320 125.391 6.859  2.301  -1.233 C15 X50 3  
X50 C17 C4  C 0 1 Y N N N N N 157.569 137.468 125.432 0.762  0.512  -0.066 C17 X50 4  
X50 C20 C5  C 0 1 N N N N N N 156.768 135.948 128.927 -2.983 0.219  -0.121 C20 X50 5  
X50 C21 C6  C 0 1 N N R N N N 156.095 136.941 129.920 -4.016 1.345  -0.192 C21 X50 6  
X50 C24 C7  C 0 1 N N N N N N 154.390 138.778 129.937 -4.852 3.421  0.915  C24 X50 7  
X50 C26 C8  C 0 1 N N N N N N 156.485 139.058 131.240 -6.450 1.892  -0.075 C26 X50 8  
X50 C01 C9  C 0 1 N N N N N N 150.978 136.777 125.614 -0.549 -5.474 -1.061 C01 X50 9  
X50 C02 C10 C 0 1 N N N N N N 152.415 136.262 125.967 -0.668 -4.538 0.142  C02 X50 10 
X50 C03 C11 C 0 1 N N N N N N 152.482 134.738 126.079 -0.620 -5.358 1.433  C03 X50 11 
X50 C04 C12 C 0 1 Y N N N N N 153.470 136.800 124.992 0.474  -3.555 0.129  C04 X50 12 
X50 C05 C13 C 0 1 Y N N N N N 153.297 137.219 123.674 1.827  -3.868 0.176  C05 X50 13 
X50 C08 C14 C 0 1 Y N N N N N 156.830 137.723 124.249 1.844  -0.317 -0.002 C08 X50 14 
X50 C11 C15 C 0 1 Y N N N N N 159.050 139.984 124.035 4.804  1.948  -0.058 C11 X50 15 
X50 C12 C16 C 0 1 Y N N N N N 157.994 140.664 124.584 5.460  2.130  1.145  C12 X50 16 
X50 C14 C17 C 0 1 Y N N N N N 159.495 141.985 125.934 7.515  2.487  -0.031 C14 X50 17 
X50 C16 C18 C 0 1 Y N N N N N 160.300 140.291 124.410 5.505  2.025  -1.247 C16 X50 18 
X50 C18 C19 C 0 1 Y N N N N N 156.872 136.945 126.560 -0.529 -0.039 -0.064 C18 X50 19 
X50 C23 C20 C 0 1 N N N N N N 154.789 137.399 129.394 -3.779 2.330  0.955  C23 X50 20 
X50 C27 C21 C 0 1 N N R N N N 157.046 138.095 130.181 -5.424 0.756  -0.065 C27 X50 21 
X50 C30 C22 C 0 1 Y N N N N N 154.866 136.975 125.299 0.366  -2.173 0.062  C30 X50 22 
X50 N06 N1  N 0 1 Y N N N N N 154.490 137.612 123.213 2.523  -2.757 0.134  N06 X50 23 
X50 N07 N2  N 0 1 Y N N N N N 155.456 137.456 124.244 1.641  -1.673 0.062  N07 X50 24 
X50 N09 N3  N 0 1 N N N N N N 157.462 138.276 123.026 3.122  0.199  -0.003 N09 X50 25 
X50 N19 N4  N 0 1 N N N N N N 157.556 136.644 127.855 -1.635 0.792  -0.123 N19 X50 26 
X50 N25 N5  N 0 1 N N N N N N 155.009 139.037 131.293 -6.180 2.807  1.041  N25 X50 27 
X50 N29 N6  N 0 1 Y N N N N N 155.558 136.710 126.479 -0.691 -1.350 -0.007 N29 X50 28 
X50 O22 O1  O 0 1 N N N N N N 155.856 136.260 131.153 -3.895 2.026  -1.442 O22 X50 29 
X50 O28 O2  O 0 1 N N N N N N 158.267 137.592 130.625 -5.675 -0.123 -1.163 O28 X50 30 
X50 H1  H1  H 0 1 N N N N N N 159.578 138.092 123.181 2.851  2.124  0.786  H1  X50 31 
X50 H2  H2  H 0 1 N N N N N N 159.009 139.319 121.999 2.887  2.034  -0.992 H2  X50 32 
X50 H3  H3  H 0 1 N N N N N N 157.392 142.209 125.996 7.328  2.544  2.098  H3  X50 33 
X50 H4  H4  H 0 1 N N N N N N 161.544 141.559 125.692 7.406  2.370  -2.162 H4  X50 34 
X50 H5  H5  H 0 1 N N N N N N 158.630 137.664 125.477 0.898  1.583  -0.113 H5  X50 35 
X50 H6  H6  H 0 1 N N N N N N 155.984 135.342 128.450 -3.133 -0.355 0.794  H6  X50 36 
X50 H7  H7  H 0 1 N N N N N N 157.446 135.291 129.492 -3.100 -0.437 -0.984 H7  X50 37 
X50 H8  H8  H 0 1 N N N N N N 154.731 139.552 129.234 -4.694 4.116  1.739  H8  X50 38 
X50 H9  H9  H 0 1 N N N N N N 153.295 138.823 130.029 -4.788 3.958  -0.031 H9  X50 39 
X50 H10 H10 H 0 1 N N N N N N 156.878 138.768 132.225 -6.379 2.437  -1.017 H10 X50 40 
X50 H11 H11 H 0 1 N N N N N N 156.816 140.079 131.000 -7.452 1.477  0.030  H11 X50 41 
X50 H12 H12 H 0 1 N N N N N N 150.254 136.369 126.335 -1.376 -6.185 -1.052 H12 X50 42 
X50 H13 H13 H 0 1 N N N N N N 150.961 137.876 125.659 -0.583 -4.890 -1.981 H13 X50 43 
X50 H14 H14 H 0 1 N N N N N N 150.710 136.448 124.599 0.396  -6.015 -1.009 H14 X50 44 
X50 H15 H15 H 0 1 N N N N N N 152.659 136.668 126.960 -1.613 -3.997 0.090  H15 X50 45 
X50 H16 H16 H 0 1 N N N N N N 151.714 134.388 126.784 0.325  -5.898 1.485  H16 X50 46 
X50 H17 H17 H 0 1 N N N N N N 152.304 134.290 125.090 -0.705 -4.690 2.291  H17 X50 47 
X50 H18 H18 H 0 1 N N N N N N 153.477 134.441 126.443 -1.446 -6.069 1.443  H18 X50 48 
X50 H19 H19 H 0 1 N N N N N N 152.368 137.225 123.124 2.238  -4.865 0.232  H19 X50 49 
X50 H20 H20 H 0 1 N N N N N N 156.985 140.430 124.279 4.914  2.061  2.074  H20 X50 50 
X50 H21 H21 H 0 1 N N N N N N 159.671 142.758 126.667 8.574  2.701  -0.020 H21 X50 51 
X50 H22 H22 H 0 1 N N N N N N 161.136 139.764 123.974 4.995  1.870  -2.186 H22 X50 52 
X50 H23 H23 H 0 1 N N N N N N 154.850 137.456 128.297 -3.832 1.801  1.907  H23 X50 53 
X50 H24 H24 H 0 1 N N N N N N 154.017 136.670 129.681 -2.794 2.785  0.846  H24 X50 54 
X50 H25 H25 H 0 1 N N N N N N 157.183 138.654 129.244 -5.504 0.202  0.870  H25 X50 55 
X50 H26 H26 H 0 1 N N N N N N 156.842 138.988 122.698 3.886  -0.397 0.043  H26 X50 56 
X50 H27 H27 H 0 1 N N N N N N 158.346 136.068 127.646 -1.517 1.754  -0.165 H27 X50 57 
X50 H28 H28 H 0 1 N N N N N N 154.687 139.922 131.630 -6.277 2.335  1.927  H28 X50 58 
X50 H30 H30 H 0 1 N N N N N N 155.445 136.855 131.769 -3.027 2.427  -1.589 H30 X50 59 
X50 H31 H31 H 0 1 N N N N N N 158.865 138.311 130.790 -6.551 -0.533 -1.147 H31 X50 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X50 C10 N09 SING N N 1  
X50 C10 C11 SING N N 2  
X50 N09 C08 SING N N 3  
X50 N06 C05 DOUB Y N 4  
X50 N06 N07 SING Y N 5  
X50 C05 C04 SING Y N 6  
X50 C11 C16 DOUB Y N 7  
X50 C11 C12 SING Y N 8  
X50 N07 C08 SING Y N 9  
X50 N07 C30 SING Y N 10 
X50 C08 C17 DOUB Y N 11 
X50 C16 C15 SING Y N 12 
X50 C12 C13 DOUB Y N 13 
X50 C04 C30 DOUB Y N 14 
X50 C04 C02 SING N N 15 
X50 C30 N29 SING Y N 16 
X50 C15 C14 DOUB Y N 17 
X50 C17 C18 SING Y N 18 
X50 C13 C14 SING Y N 19 
X50 C01 C02 SING N N 20 
X50 C02 C03 SING N N 21 
X50 N29 C18 DOUB Y N 22 
X50 C18 N19 SING N N 23 
X50 N19 C20 SING N N 24 
X50 C20 C21 SING N N 25 
X50 C23 C21 SING N N 26 
X50 C23 C24 SING N N 27 
X50 C21 C27 SING N N 28 
X50 C21 O22 SING N N 29 
X50 C24 N25 SING N N 30 
X50 C27 O28 SING N N 31 
X50 C27 C26 SING N N 32 
X50 C26 N25 SING N N 33 
X50 C10 H1  SING N N 34 
X50 C10 H2  SING N N 35 
X50 C13 H3  SING N N 36 
X50 C15 H4  SING N N 37 
X50 C17 H5  SING N N 38 
X50 C20 H6  SING N N 39 
X50 C20 H7  SING N N 40 
X50 C24 H8  SING N N 41 
X50 C24 H9  SING N N 42 
X50 C26 H10 SING N N 43 
X50 C26 H11 SING N N 44 
X50 C01 H12 SING N N 45 
X50 C01 H13 SING N N 46 
X50 C01 H14 SING N N 47 
X50 C02 H15 SING N N 48 
X50 C03 H16 SING N N 49 
X50 C03 H17 SING N N 50 
X50 C03 H18 SING N N 51 
X50 C05 H19 SING N N 52 
X50 C12 H20 SING N N 53 
X50 C14 H21 SING N N 54 
X50 C16 H22 SING N N 55 
X50 C23 H23 SING N N 56 
X50 C23 H24 SING N N 57 
X50 C27 H25 SING N N 58 
X50 N09 H26 SING N N 59 
X50 N19 H27 SING N N 60 
X50 N25 H28 SING N N 61 
X50 O22 H30 SING N N 62 
X50 O28 H31 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X50 InChI            InChI                1.06  "InChI=1S/C22H30N6O2/c1-15(2)17-12-26-28-20(24-11-16-6-4-3-5-7-16)10-19(27-21(17)28)25-14-22(30)8-9-23-13-18(22)29/h3-7,10,12,15,18,23-24,29-30H,8-9,11,13-14H2,1-2H3,(H,25,27)/t18-,22-/m1/s1" 
X50 InChIKey         InChI                1.06  OVDMCYNLHNMECD-XMSQKQJNSA-N                                                                                                                                                                     
X50 SMILES_CANONICAL CACTVS               3.385 "CC(C)c1cnn2c(NCc3ccccc3)cc(NC[C@]4(O)CCNC[C@H]4O)nc12"                                                                                                                                         
X50 SMILES           CACTVS               3.385 "CC(C)c1cnn2c(NCc3ccccc3)cc(NC[C]4(O)CCNC[CH]4O)nc12"                                                                                                                                           
X50 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)c1cnn2c1nc(cc2NCc3ccccc3)NC[C@@]4(CCNC[C@H]4O)O"                                                                                                                                          
X50 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)c1cnn2c1nc(cc2NCc3ccccc3)NCC4(CCNCC4O)O"                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           X50 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R},4~{R})-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X50 "Create component" 2023-05-31 PDBE 
X50 "Initial release"  2024-03-20 RCSB 
# 
