data_VY0
# 
_chem_comp.id                                    VY0 
_chem_comp.name                                  "macrocyclic inhibitor" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-20 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        337.379 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VY0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QLQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VY0 C10 C1  C 0 1 Y N N N N N 1.537 -22.420 -22.190 5.254  1.441  -0.013 C10 VY0 1  
VY0 C7  C2  C 0 1 Y N N N N N 3.758 -19.593 -23.333 1.639  0.664  -0.072 C7  VY0 2  
VY0 C5  C3  C 0 1 N N N N N N 4.284 -15.611 -22.463 -0.790 -2.534 -0.416 C5  VY0 3  
VY0 C6  C4  C 0 1 Y N N N N N 3.059 -17.736 -22.169 1.456  -1.644 -0.023 C6  VY0 4  
VY0 C1  C5  C 0 1 N N N N N N 6.198 -15.306 -26.090 -3.121 -0.943 -0.060 C1  VY0 5  
VY0 C2  C6  C 0 1 N N N N N N 6.372 -14.640 -24.724 -3.685 -2.228 0.553  C2  VY0 6  
VY0 C3  C7  C 0 1 N N N N N N 5.117 -13.937 -24.212 -3.102 -3.443 -0.169 C3  VY0 7  
VY0 C4  C8  C 0 1 N N N N N N 3.984 -14.871 -23.758 -1.638 -3.622 0.245  C4  VY0 8  
VY0 C11 C9  C 0 1 Y N N N N N 0.780 -21.755 -21.241 5.791  0.162  0.100  C11 VY0 9  
VY0 C12 C10 C 0 1 Y N N N N N 0.993 -20.427 -20.982 4.986  -0.938 0.146  C12 VY0 10 
VY0 C13 C11 C 0 1 Y N N N N N 1.992 -19.713 -21.683 3.595  -0.782 0.065  C13 VY0 11 
VY0 C14 C12 C 0 1 Y N N N N N 5.568 -19.590 -25.013 -0.287 2.120  -0.031 C14 VY0 12 
VY0 C15 C13 C 0 1 Y N N N N N 5.796 -18.212 -25.188 -1.309 1.181  -0.105 C15 VY0 13 
VY0 C16 C14 C 0 1 Y N N N N N 6.869 -18.144 -26.047 -2.510 1.847  0.007  C16 VY0 14 
VY0 C8  C15 C 0 1 Y N N N N N 2.774 -20.392 -22.647 3.053  0.521  -0.027 C8  VY0 15 
VY0 C9  C16 C 0 1 Y N N N N N 2.516 -21.766 -22.881 3.904  1.630  -0.073 C9  VY0 16 
VY0 N1  N1  N 0 1 N N N N N N 3.151 -16.396 -21.997 0.630  -2.761 -0.093 N1  VY0 17 
VY0 N2  N2  N 0 1 Y N N N N N 3.869 -18.281 -23.090 0.902  -0.433 -0.086 N2  VY0 18 
VY0 N3  N3  N 0 1 Y N N N N N 2.139 -18.375 -21.428 2.756  -1.828 0.073  N3  VY0 19 
VY0 N4  N4  N 0 1 N N N N N N 4.612 -20.183 -24.210 1.115  1.951  -0.108 N4  VY0 20 
VY0 O   O1  O 0 1 N N N N N N 8.811 -17.506 -27.235 -4.776 2.165  -0.017 O   VY0 21 
VY0 C   C17 C 0 1 N N N N N N 7.776 -17.142 -26.681 -3.879 1.344  -0.054 C   VY0 22 
VY0 N5  N5  N 0 1 Y N N N N N 7.213 -19.422 -26.336 -2.208 3.179  0.176  N5  VY0 23 
VY0 N6  N6  N 0 1 Y N N N N N 6.421 -20.337 -25.715 -0.822 3.316  0.146  N6  VY0 24 
VY0 N   N7  N 0 1 N N N N N N 7.449 -15.842 -26.616 -4.237 0.037  -0.150 N   VY0 25 
VY0 H14 H1  H 0 1 N N N N N N 1.351 -23.466 -22.386 5.914  2.295  -0.049 H14 VY0 26 
VY0 H10 H2  H 0 1 N N N N N N 5.136 -16.286 -22.631 -0.928 -2.571 -1.497 H10 VY0 27 
VY0 H11 H3  H 0 1 N N N N N N 4.546 -14.875 -21.688 -1.096 -1.556 -0.043 H11 VY0 28 
VY0 H3  H4  H 0 1 N N N N N N 5.809 -14.560 -26.799 -2.329 -0.546 0.575  H3  VY0 29 
VY0 H2  H5  H 0 1 N N N N N N 5.476 -16.130 -25.991 -2.728 -1.150 -1.056 H2  VY0 30 
VY0 H5  H6  H 0 1 N N N N N N 6.657 -15.414 -23.996 -3.420 -2.272 1.610  H5  VY0 31 
VY0 H4  H7  H 0 1 N N N N N N 7.178 -13.896 -24.802 -4.770 -2.232 0.452  H4  VY0 32 
VY0 H7  H8  H 0 1 N N N N N N 5.404 -13.309 -23.356 -3.668 -4.334 0.102  H7  VY0 33 
VY0 H6  H9  H 0 1 N N N N N N 4.730 -13.300 -25.021 -3.159 -3.288 -1.246 H6  VY0 34 
VY0 H9  H10 H 0 1 N N N N N N 3.075 -14.269 -23.611 -1.286 -4.602 -0.075 H9  VY0 35 
VY0 H8  H11 H 0 1 N N N N N N 3.808 -15.614 -24.550 -1.554 -3.540 1.329  H8  VY0 36 
VY0 H15 H12 H 0 1 N N N N N N 0.013 -22.289 -20.699 6.863  0.038  0.151  H15 VY0 37 
VY0 H16 H13 H 0 1 N N N N N N 0.394 -19.922 -20.238 5.417  -1.923 0.244  H16 VY0 38 
VY0 H18 H14 H 0 1 N N N N N N 5.250 -17.391 -24.747 -1.184 0.116  -0.228 H18 VY0 39 
VY0 H13 H15 H 0 1 N N N N N N 3.101 -22.302 -23.614 3.496  2.626  -0.163 H13 VY0 40 
VY0 H12 H16 H 0 1 N N N N N N 3.096 -16.241 -21.011 0.975  -3.654 0.064  H12 VY0 41 
VY0 H17 H17 H 0 1 N N N N N N 4.539 -21.178 -24.284 1.701  2.720  -0.184 H17 VY0 42 
VY0 H   H18 H 0 1 N N N N N N 7.970 -19.667 -26.942 -2.849 3.898  0.295  H   VY0 43 
VY0 H1  H19 H 0 1 N N N N N N 8.120 -15.184 -26.957 -5.159 -0.239 -0.270 H1  VY0 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VY0 C   O   DOUB N N 1  
VY0 C   N   SING N N 2  
VY0 N   C1  SING N N 3  
VY0 C1  C2  SING N N 4  
VY0 C2  C3  SING N N 5  
VY0 C3  C4  SING N N 6  
VY0 C4  C5  SING N N 7  
VY0 C5  N1  SING N N 8  
VY0 N1  C6  SING N N 9  
VY0 C6  N2  DOUB Y N 10 
VY0 N2  C7  SING Y N 11 
VY0 C8  C7  DOUB Y N 12 
VY0 C8  C9  SING Y N 13 
VY0 C9  C10 DOUB Y N 14 
VY0 C10 C11 SING Y N 15 
VY0 C11 C12 DOUB Y N 16 
VY0 C12 C13 SING Y N 17 
VY0 C13 C8  SING Y N 18 
VY0 N3  C13 DOUB Y N 19 
VY0 C6  N3  SING Y N 20 
VY0 C7  N4  SING N N 21 
VY0 N4  C14 SING N N 22 
VY0 C14 C15 SING Y N 23 
VY0 C15 C16 DOUB Y N 24 
VY0 C16 C   SING N N 25 
VY0 N5  C16 SING Y N 26 
VY0 N6  N5  SING Y N 27 
VY0 C14 N6  DOUB Y N 28 
VY0 C10 H14 SING N N 29 
VY0 C5  H10 SING N N 30 
VY0 C5  H11 SING N N 31 
VY0 C1  H3  SING N N 32 
VY0 C1  H2  SING N N 33 
VY0 C2  H5  SING N N 34 
VY0 C2  H4  SING N N 35 
VY0 C3  H7  SING N N 36 
VY0 C3  H6  SING N N 37 
VY0 C4  H9  SING N N 38 
VY0 C4  H8  SING N N 39 
VY0 C11 H15 SING N N 40 
VY0 C12 H16 SING N N 41 
VY0 C15 H18 SING N N 42 
VY0 C9  H13 SING N N 43 
VY0 N1  H12 SING N N 44 
VY0 N4  H17 SING N N 45 
VY0 N5  H   SING N N 46 
VY0 N   H1  SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VY0 InChI            InChI                1.06  "InChI=1S/C17H19N7O/c25-16-13-10-14(24-23-13)21-15-11-6-2-3-7-12(11)20-17(22-15)19-9-5-1-4-8-18-16/h2-3,6-7,10H,1,4-5,8-9H2,(H,18,25)(H3,19,20,21,22,23,24)" 
VY0 InChIKey         InChI                1.06  XBWKVZHZUZNMJE-UHFFFAOYSA-N                                                                                                                                  
VY0 SMILES_CANONICAL CACTVS               3.385 "O=C1NCCCCCNc2nc(Nc3cc1[nH]n3)c4ccccc4n2"                                                                                                                    
VY0 SMILES           CACTVS               3.385 "O=C1NCCCCCNc2nc(Nc3cc1[nH]n3)c4ccccc4n2"                                                                                                                    
VY0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3nc(n2)NCCCCCNC(=O)c4cc(n[nH]4)N3"                                                                                                              
VY0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3nc(n2)NCCCCCNC(=O)c4cc(n[nH]4)N3"                                                                                                              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VY0 "Create component" 2023-09-20 PDBE 
VY0 "Initial release"  2023-11-08 RCSB 
# 
