data_VN0
# 
_chem_comp.id                                    VN0 
_chem_comp.name                                  "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(methylaminomethyl)pyrrolidine-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H16 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-31 
_chem_comp.pdbx_modified_date                    2024-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        176.214 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VN0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K7I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VN0 CAA C1  C 0 1 N N R N N N 26.763 -18.387 -4.172 -1.223 0.584  -0.531 CAA VN0 1  
VN0 CAB C2  C 0 1 N N S N N N 27.769 -19.367 -3.642 -1.480 -0.943 -0.503 CAB VN0 2  
VN0 CAC C3  C 0 1 N N R N N N 28.777 -18.445 -3.024 -0.034 -1.505 -0.520 CAC VN0 3  
VN0 CAD C4  C 0 1 N N R N N N 27.909 -17.408 -2.351 0.748  -0.479 0.326  CAD VN0 4  
VN0 CAF C5  C 0 1 N N N N N N 25.397 -19.034 -4.311 -2.415 1.336  0.064  CAF VN0 5  
VN0 CAJ C6  C 0 1 N N N N N N 28.576 -16.041 -2.375 2.136  -0.255 -0.277 CAJ VN0 6  
VN0 CAL C7  C 0 1 N N N N N N 29.739 -14.399 -1.183 4.166  1.052  -0.090 CAL VN0 7  
VN0 NAE N1  N 0 1 N N N N N N 26.687 -17.329 -3.163 -0.020 0.780  0.306  NAE VN0 8  
VN0 NAK N2  N 0 1 N N N N N N 29.468 -15.847 -1.220 2.827  0.809  0.463  NAK VN0 9  
VN0 OAG O1  O 0 1 N N N N N N 27.159 -20.172 -2.619 -2.163 -1.325 0.693  OAG VN0 10 
VN0 OAH O2  O 0 1 N N N N N N 29.563 -19.131 -2.056 0.013  -2.799 0.084  OAH VN0 11 
VN0 OAI O3  O 0 1 N N N N N N 24.577 -18.238 -5.180 -2.209 2.743  -0.077 OAI VN0 12 
VN0 H1  H1  H 0 1 N N N N N N 27.093 -17.984 -5.141 -1.034 0.918  -1.551 H1  VN0 13 
VN0 H2  H2  H 0 1 N N N N N N 28.211 -19.970 -4.448 -2.033 -1.263 -1.386 H2  VN0 14 
VN0 H3  H3  H 0 1 N N N N N N 29.402 -17.978 -3.800 0.354  -1.540 -1.538 H3  VN0 15 
VN0 H4  H4  H 0 1 N N N N N N 27.681 -17.706 -1.317 0.843  -0.838 1.351  H4  VN0 16 
VN0 H5  H5  H 0 1 N N N N N N 24.922 -19.104 -3.321 -3.325 1.047  -0.460 H5  VN0 17 
VN0 H6  H6  H 0 1 N N N N N N 25.510 -20.042 -4.736 -2.510 1.087  1.121  H6  VN0 18 
VN0 H7  H7  H 0 1 N N N N N N 29.165 -15.949 -3.299 2.714  -1.177 -0.212 H7  VN0 19 
VN0 H8  H8  H 0 1 N N N N N N 27.797 -15.265 -2.358 2.035  0.037  -1.323 H8  VN0 20 
VN0 H9  H9  H 0 1 N N N N N N 30.406 -14.172 -0.338 4.655  1.844  0.477  H9  VN0 21 
VN0 H10 H10 H 0 1 N N N N N N 30.221 -14.092 -2.123 4.757  0.139  -0.023 H10 VN0 22 
VN0 H11 H11 H 0 1 N N N N N N 28.793 -13.852 -1.060 4.079  1.352  -1.134 H11 VN0 23 
VN0 H12 H12 H 0 1 N N N N N N 26.630 -16.435 -3.608 0.543  1.541  -0.042 H12 VN0 24 
VN0 H14 H14 H 0 1 N N N N N N 29.019 -16.142 -0.376 2.280  1.657  0.472  H14 VN0 25 
VN0 H16 H16 H 0 1 N N N N N N 27.795 -20.793 -2.283 -2.346 -2.273 0.756  H16 VN0 26 
VN0 H17 H17 H 0 1 N N N N N N 30.194 -18.531 -1.677 -0.525 -3.464 -0.367 H17 VN0 27 
VN0 H18 H18 H 0 1 N N N N N N 23.722 -18.642 -5.267 -2.927 3.283  0.280  H18 VN0 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VN0 OAI CAF SING N N 1  
VN0 CAF CAA SING N N 2  
VN0 CAA CAB SING N N 3  
VN0 CAA NAE SING N N 4  
VN0 CAB CAC SING N N 5  
VN0 CAB OAG SING N N 6  
VN0 NAE CAD SING N N 7  
VN0 CAC CAD SING N N 8  
VN0 CAC OAH SING N N 9  
VN0 CAJ CAD SING N N 10 
VN0 CAJ NAK SING N N 11 
VN0 NAK CAL SING N N 12 
VN0 CAA H1  SING N N 13 
VN0 CAB H2  SING N N 14 
VN0 CAC H3  SING N N 15 
VN0 CAD H4  SING N N 16 
VN0 CAF H5  SING N N 17 
VN0 CAF H6  SING N N 18 
VN0 CAJ H7  SING N N 19 
VN0 CAJ H8  SING N N 20 
VN0 CAL H9  SING N N 21 
VN0 CAL H10 SING N N 22 
VN0 CAL H11 SING N N 23 
VN0 NAE H12 SING N N 24 
VN0 NAK H14 SING N N 25 
VN0 OAG H16 SING N N 26 
VN0 OAH H17 SING N N 27 
VN0 OAI H18 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VN0 InChI            InChI                1.06  "InChI=1S/C7H16N2O3/c1-8-2-4-6(11)7(12)5(3-10)9-4/h4-12H,2-3H2,1H3/t4-,5-,6-,7+/m1/s1" 
VN0 InChIKey         InChI                1.06  LPOCSFFEUYJDFL-GBNDHIKLSA-N                                                            
VN0 SMILES_CANONICAL CACTVS               3.385 "CNC[C@H]1N[C@H](CO)[C@H](O)[C@@H]1O"                                                  
VN0 SMILES           CACTVS               3.385 "CNC[CH]1N[CH](CO)[CH](O)[CH]1O"                                                       
VN0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC[C@@H]1[C@H]([C@H]([C@H](N1)CO)O)O"                                                
VN0 SMILES           "OpenEye OEToolkits" 2.0.7 "CNCC1C(C(C(N1)CO)O)O"                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           VN0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(methylaminomethyl)pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VN0 "Create component" 2023-07-31 PDBJ 
VN0 "Initial release"  2024-04-10 RCSB 
# 
