data_TV0
# 
_chem_comp.id                                    TV0 
_chem_comp.name                                  "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H13 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-29 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        275.282 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TV0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8J5H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TV0 N1  N1  N 0 1 N N N N N N 16.087 14.123 2.579  -1.458 0.318  -0.396 N1  TV0 1  
TV0 N3  N2  N 0 1 N N N N N N 18.134 12.782 2.676  -3.172 -0.769 0.751  N3  TV0 2  
TV0 C4  C1  C 0 1 N N R N N N 15.081 14.847 3.380  -0.026 0.581  -0.562 C4  TV0 3  
TV0 C5  C2  C 0 1 N N N N N N 11.331 15.077 4.288  3.615  -0.628 -0.901 C5  TV0 4  
TV0 C6  C3  C 0 1 N N N N N N 16.050 13.970 1.185  -2.358 0.910  -1.231 C6  TV0 5  
TV0 C7  C4  C 0 1 N N N N N N 17.089 13.515 3.275  -1.877 -0.512 0.578  C7  TV0 6  
TV0 C8  C5  C 0 1 N N N N N N 17.068 13.234 0.560  -3.678 0.654  -1.070 C8  TV0 7  
TV0 C1  C6  C 0 1 N N S N N N 12.455 15.137 3.297  2.372  -0.659 -0.009 C1  TV0 8  
TV0 C2  C7  C 0 1 N N S N N N 13.255 16.438 3.362  2.141  0.722  0.639  C2  TV0 9  
TV0 C3  C8  C 0 1 N N R N N N 14.609 16.123 2.726  0.628  0.954  0.794  C3  TV0 10 
TV0 C9  C9  C 0 1 N N N N N N 18.095 12.657 1.353  -4.084 -0.220 -0.041 C9  TV0 11 
TV0 N2  N3  N 0 1 N N N N N N 19.157 11.893 0.745  -5.419 -0.496 0.145  N2  TV0 12 
TV0 O1  O1  O 0 1 N N N N N N 13.448 16.758 4.711  2.701  1.742  -0.192 O1  TV0 13 
TV0 O2  O2  O 0 1 N N N N N N 15.514 17.152 2.982  0.374  2.328  1.096  O2  TV0 14 
TV0 O3  O3  O 0 1 N N N N N N 11.926 14.971 1.951  2.503  -1.666 0.996  O3  TV0 15 
TV0 O4  O4  O 0 1 N N N N N N 10.239 15.803 3.801  4.758  -0.287 -0.114 O4  TV0 16 
TV0 O5  O5  O 0 1 N N N N N N 17.107 13.644 4.615  -1.057 -1.037 1.313  O5  TV0 17 
TV0 S1  S1  S 0 1 N N N N N N 13.635 13.776 3.692  0.871  -0.954 -1.016 S1  TV0 18 
TV0 H1  H1  H 0 1 N N N N N N 15.497 15.082 4.371  0.139  1.361  -1.305 H1  TV0 19 
TV0 H2  H2  H 0 1 N N N N N N 11.035 14.029 4.443  3.763  -1.610 -1.351 H2  TV0 20 
TV0 H3  H3  H 0 1 N N N N N N 11.662 15.510 5.244  3.480  0.115  -1.687 H3  TV0 21 
TV0 H4  H4  H 0 1 N N N N N N 15.253 14.410 0.604  -2.021 1.576  -2.012 H4  TV0 22 
TV0 H5  H5  H 0 1 N N N N N N 17.070 13.108 -0.513 -4.408 1.113  -1.720 H5  TV0 23 
TV0 H6  H6  H 0 1 N N N N N N 12.742 17.237 2.806  2.615  0.749  1.620  H6  TV0 24 
TV0 H7  H7  H 0 1 N N N N N N 14.479 15.961 1.646  0.232  0.319  1.586  H7  TV0 25 
TV0 H8  H8  H 0 1 N N N N N N 19.873 11.490 1.315  -6.083 -0.090 -0.433 H8  TV0 26 
TV0 H9  H9  H 0 1 N N N N N N 19.178 11.767 -0.247 -5.695 -1.098 0.854  H9  TV0 27 
TV0 H10 H10 H 0 1 N N N N N N 12.610 16.955 5.113  2.591  2.637  0.157  H10 TV0 28 
TV0 H11 H11 H 0 1 N N N N N N 16.351 16.945 2.582  0.771  2.628  1.925  H11 TV0 29 
TV0 H12 H12 H 0 1 N N N N N N 11.427 14.164 1.904  2.650  -2.555 0.645  H12 TV0 30 
TV0 H13 H13 H 0 1 N N N N N N 9.527  15.765 4.429  5.583  -0.249 -0.615 H13 TV0 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TV0 C8 C6  DOUB N N 1  
TV0 C8 C9  SING N N 2  
TV0 N2 C9  SING N N 3  
TV0 C6 N1  SING N N 4  
TV0 C9 N3  DOUB N N 5  
TV0 O3 C1  SING N N 6  
TV0 N1 C7  SING N N 7  
TV0 N1 C4  SING N N 8  
TV0 N3 C7  SING N N 9  
TV0 C3 O2  SING N N 10 
TV0 C3 C2  SING N N 11 
TV0 C3 C4  SING N N 12 
TV0 C7 O5  DOUB N N 13 
TV0 C1 C2  SING N N 14 
TV0 C1 S1  SING N N 15 
TV0 C1 C5  SING N N 16 
TV0 C2 O1  SING N N 17 
TV0 C4 S1  SING N N 18 
TV0 O4 C5  SING N N 19 
TV0 C4 H1  SING N N 20 
TV0 C5 H2  SING N N 21 
TV0 C5 H3  SING N N 22 
TV0 C6 H4  SING N N 23 
TV0 C8 H5  SING N N 24 
TV0 C2 H6  SING N N 25 
TV0 C3 H7  SING N N 26 
TV0 N2 H8  SING N N 27 
TV0 N2 H9  SING N N 28 
TV0 O1 H10 SING N N 29 
TV0 O2 H11 SING N N 30 
TV0 O3 H12 SING N N 31 
TV0 O4 H13 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TV0 InChI            InChI                1.06  "InChI=1S/C9H13N3O5S/c10-4-1-2-12(8(16)11-4)7-5(14)6(15)9(17,3-13)18-7/h1-2,5-7,13-15,17H,3H2,(H2,10,11,16)/t5-,6+,7-,9+/m1/s1" 
TV0 InChIKey         InChI                1.06  NCKQSFKRXULRQX-AYHNYZOXSA-N                                                                                                     
TV0 SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1)[C@@H]2S[C@@](O)(CO)[C@@H](O)[C@H]2O"                                                                         
TV0 SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1)[CH]2S[C](O)(CO)[CH](O)[CH]2O"                                                                                
TV0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@@](S2)(CO)O)O)O"                                                                       
TV0 SMILES           "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(S2)(CO)O)O)O"                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           TV0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TV0 "Create component" 2023-04-29 PDBJ 
TV0 "Initial release"  2024-04-24 RCSB 
# 
