data_TK0
# 
_chem_comp.id                                    TK0 
_chem_comp.name                                  "(3S)-N-[(1-benzothiophen-5-yl)methyl]-1-[6-(4-{2-[(2E)-3-(pyridin-3-yl)prop-2-enamido]ethyl}phenyl)thieno[2,3-d]pyrimidin-4-yl]piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H34 N6 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-25 
_chem_comp.pdbx_modified_date                    2023-07-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        658.835 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TK0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DSM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TK0 C01 C1  C 0 1 N N N 48.588 30.037 55.247 -4.224  -0.072 -0.864 C01 TK0 1  
TK0 C02 C2  C 0 1 N N S 48.821 28.528 55.180 -4.889  0.986  0.020  C02 TK0 2  
TK0 C03 C3  C 0 1 N N N 47.600 27.803 55.890 -4.314  2.363  -0.322 C03 TK0 3  
TK0 C05 C4  C 0 1 N N N 46.062 29.605 55.235 -2.197  1.381  -0.976 C05 TK0 4  
TK0 C06 C5  C 0 1 N N N 47.259 30.383 54.616 -2.708  -0.025 -0.653 C06 TK0 5  
TK0 C07 C6  C 0 1 Y N N 45.653 27.303 54.184 -2.330  3.622  -0.277 C07 TK0 6  
TK0 C09 C7  C 0 1 Y N N 45.007 25.150 53.334 -2.616  5.855  -0.773 C09 TK0 7  
TK0 C11 C8  C 0 1 Y N N 44.607 26.978 52.012 -0.470  5.155  -0.288 C11 TK0 8  
TK0 C12 C9  C 0 1 Y N N 45.141 27.876 52.937 -0.940  3.850  -0.102 C12 TK0 9  
TK0 C13 C10 C 0 1 Y N N 45.068 29.272 52.435 0.123   2.933  0.250  C13 TK0 10 
TK0 C14 C11 C 0 1 Y N N 44.510 29.508 51.174 1.332   3.489  0.330  C14 TK0 11 
TK0 C15 C12 C 0 1 Y N N 44.269 30.761 50.331 2.568   2.753  0.672  C15 TK0 12 
TK0 C16 C13 C 0 1 Y N N 45.267 31.730 50.061 3.790   3.426  0.732  C16 TK0 13 
TK0 C17 C14 C 0 1 Y N N 45.053 32.896 49.280 4.940   2.734  1.051  C17 TK0 14 
TK0 C18 C15 C 0 1 Y N N 43.819 33.202 48.673 4.883   1.376  1.313  C18 TK0 15 
TK0 C19 C16 C 0 1 Y N N 42.817 32.257 48.930 3.675   0.704  1.256  C19 TK0 16 
TK0 C20 C17 C 0 1 Y N N 43.039 31.091 49.720 2.517   1.385  0.943  C20 TK0 17 
TK0 C21 C18 C 0 1 N N N 43.593 34.495 47.818 6.144   0.625  1.655  C21 TK0 18 
TK0 C22 C19 C 0 1 N N N 43.410 34.328 46.258 6.789   0.099  0.371  C22 TK0 19 
TK0 C24 C20 C 0 1 N N N 42.297 35.459 44.202 8.755   -1.187 -0.276 C24 TK0 20 
TK0 C25 C21 C 0 1 N N N 41.199 36.258 43.518 9.980   -1.917 0.056  C25 TK0 21 
TK0 C26 C22 C 0 1 N N N 40.483 37.265 44.084 10.720  -2.473 -0.923 C26 TK0 22 
TK0 C27 C23 C 0 1 Y N N 39.366 38.092 43.488 11.952  -3.207 -0.589 C27 TK0 23 
TK0 C28 C24 C 0 1 Y N N 38.933 37.926 42.153 12.362  -3.339 0.741  C28 TK0 24 
TK0 C30 C25 C 0 1 Y N N 37.274 39.570 42.277 14.219  -4.549 0.108  C30 TK0 25 
TK0 C31 C26 C 0 1 Y N N 37.610 39.822 43.611 13.879  -4.468 -1.231 C31 TK0 26 
TK0 C32 C27 C 0 1 Y N N 38.650 39.077 44.196 12.731  -3.790 -1.599 C32 TK0 27 
TK0 C35 C28 C 0 1 N N N 49.067 28.037 53.728 -6.375  0.986  -0.226 C35 TK0 28 
TK0 C38 C29 C 0 1 N N N 50.089 28.191 51.327 -8.541  -0.130 -0.235 C38 TK0 29 
TK0 C39 C30 C 0 1 Y N N 48.846 27.603 50.549 -9.105  -1.488 0.098  C39 TK0 30 
TK0 C40 C31 C 0 1 Y N N 48.369 26.293 50.793 -9.551  -1.751 1.387  C40 TK0 31 
TK0 C41 C32 C 0 1 Y N N 47.263 25.773 50.100 -10.067 -2.985 1.701  C41 TK0 32 
TK0 C42 C33 C 0 1 Y N N 46.627 26.571 49.147 -10.146 -3.984 0.724  C42 TK0 33 
TK0 C43 C34 C 0 1 Y N N 47.047 27.854 48.865 -9.698  -3.721 -0.573 C43 TK0 34 
TK0 C44 C35 C 0 1 Y N N 48.163 28.368 49.572 -9.178  -2.443 -0.869 C44 TK0 35 
TK0 C45 C36 C 0 1 Y N N 46.257 28.546 47.835 -9.860  -4.875 -1.444 C45 TK0 36 
TK0 C46 C37 C 0 1 Y N N 45.223 27.744 47.344 -10.387 -5.936 -0.867 C46 TK0 37 
TK0 N04 N1  N 0 1 N N N 46.251 28.107 55.272 -2.862  2.358  -0.102 N04 TK0 38 
TK0 N08 N2  N 0 1 Y N N 45.561 25.937 54.328 -3.111  4.641  -0.604 N08 TK0 39 
TK0 N10 N3  N 0 1 Y N N 44.515 25.625 52.154 -1.338  6.116  -0.628 N10 TK0 40 
TK0 N23 N4  N 0 1 N N N 42.339 35.120 45.601 8.015   -0.631 0.704  N23 TK0 41 
TK0 N29 N5  N 0 1 Y N N 37.934 38.630 41.565 13.464  -3.995 1.038  N29 TK0 42 
TK0 N37 N6  N 0 1 N N N 49.847 28.655 52.731 -7.096  -0.130 0.005  N37 TK0 43 
TK0 O33 O1  O 0 1 N N N 43.235 35.044 43.503 8.404   -1.083 -1.437 O33 TK0 44 
TK0 O36 O2  O 0 1 N N N 48.507 26.969 53.408 -6.923  1.989  -0.631 O36 TK0 45 
TK0 S34 S1  S 0 1 Y N N 44.048 27.880 50.588 1.266   5.205  -0.023 S34 TK0 46 
TK0 S47 S2  S 0 1 Y N N 45.248 26.208 48.136 -10.746 -5.634 0.822  S47 TK0 47 
TK0 H1  H1  H 0 1 N N N 49.394 30.554 54.706 -4.598  -1.060 -0.593 H1  TK0 48 
TK0 H2  H2  H 0 1 N N N 48.587 30.359 56.299 -4.453  0.130  -1.910 H2  TK0 49 
TK0 H3  H3  H 0 1 N N N 49.723 28.298 55.767 -4.692  0.761  1.069  H3  TK0 50 
TK0 H4  H4  H 0 1 N N N 47.766 26.717 55.838 -4.523  2.594  -1.367 H4  TK0 51 
TK0 H5  H5  H 0 1 N N N 47.576 28.120 56.943 -4.775  3.117  0.316  H5  TK0 52 
TK0 H6  H6  H 0 1 N N N 45.916 29.960 56.266 -1.120  1.423  -0.813 H6  TK0 53 
TK0 H7  H7  H 0 1 N N N 45.163 29.825 54.640 -2.416  1.617  -2.017 H7  TK0 54 
TK0 H8  H8  H 0 1 N N N 47.310 30.148 53.543 -2.477  -0.267 0.384  H8  TK0 55 
TK0 H9  H9  H 0 1 N N N 47.080 31.460 54.747 -2.225  -0.747 -1.312 H9  TK0 56 
TK0 H10 H10 H 0 1 N N N 44.961 24.085 53.505 -3.286  6.659  -1.040 H10 TK0 57 
TK0 H11 H11 H 0 1 N N N 45.439 30.091 53.033 -0.049  1.883  0.433  H11 TK0 58 
TK0 H12 H12 H 0 1 N N N 46.252 31.572 50.475 3.835   4.485  0.527  H12 TK0 59 
TK0 H13 H13 H 0 1 N N N 45.876 33.582 49.145 5.886   3.252  1.097  H13 TK0 60 
TK0 H14 H14 H 0 1 N N N 41.834 32.419 48.512 3.638   -0.356 1.461  H14 TK0 61 
TK0 H15 H15 H 0 1 N N N 42.210 30.414 49.861 1.575   0.859  0.899  H15 TK0 62 
TK0 H16 H16 H 0 1 N N N 44.463 35.149 47.977 6.839   1.294  2.163  H16 TK0 63 
TK0 H17 H17 H 0 1 N N N 42.688 34.988 48.203 5.902   -0.212 2.310  H17 TK0 64 
TK0 H18 H18 H 0 1 N N N 43.200 33.266 46.063 6.094   -0.570 -0.136 H18 TK0 65 
TK0 H19 H19 H 0 1 N N N 44.363 34.606 45.784 7.031   0.936  -0.283 H19 TK0 66 
TK0 H20 H20 H 0 1 N N N 40.968 36.003 42.494 10.290  -2.009 1.087  H20 TK0 67 
TK0 H21 H21 H 0 1 N N N 40.749 37.509 45.102 10.409  -2.381 -1.954 H21 TK0 68 
TK0 H22 H22 H 0 1 N N N 39.437 37.181 41.555 11.771  -2.899 1.530  H22 TK0 69 
TK0 H23 H23 H 0 1 N N N 36.479 40.133 41.811 15.115  -5.078 0.397  H23 TK0 70 
TK0 H24 H24 H 0 1 N N N 37.082 40.573 44.180 14.504  -4.930 -1.981 H24 TK0 71 
TK0 H25 H25 H 0 1 N N N 38.909 39.267 45.227 12.442  -3.712 -2.636 H25 TK0 72 
TK0 H26 H26 H 0 1 N N N 50.860 27.408 51.363 -8.736  0.097  -1.283 H26 TK0 73 
TK0 H27 H27 H 0 1 N N N 50.466 29.050 50.752 -9.014  0.624  0.395  H27 TK0 74 
TK0 H28 H28 H 0 1 N N N 48.867 25.679 51.529 -9.491  -0.983 2.144  H28 TK0 75 
TK0 H29 H29 H 0 1 N N N 46.910 24.772 50.301 -10.412 -3.185 2.704  H29 TK0 76 
TK0 H30 H30 H 0 1 N N N 48.502 29.371 49.360 -8.828  -2.224 -1.867 H30 TK0 77 
TK0 H31 H31 H 0 1 N N N 46.453 29.553 47.498 -9.570  -4.862 -2.484 H31 TK0 78 
TK0 H32 H32 H 0 1 N N N 44.515 28.040 46.584 -10.574 -6.873 -1.371 H32 TK0 79 
TK0 H33 H33 H 0 1 N N N 41.587 35.444 46.176 8.294   -0.714 1.629  H33 TK0 80 
TK0 H34 H34 H 0 1 N N N 50.295 29.510 52.993 -6.658  -0.932 0.329  H34 TK0 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TK0 N29 C28 DOUB Y N 1  
TK0 N29 C30 SING Y N 2  
TK0 C28 C27 SING Y N 3  
TK0 C30 C31 DOUB Y N 4  
TK0 C27 C26 SING N N 5  
TK0 C27 C32 DOUB Y N 6  
TK0 O33 C24 DOUB N N 7  
TK0 C25 C26 DOUB N E 8  
TK0 C25 C24 SING N N 9  
TK0 C31 C32 SING Y N 10 
TK0 C24 N23 SING N N 11 
TK0 N23 C22 SING N N 12 
TK0 C22 C21 SING N N 13 
TK0 C46 C45 DOUB Y N 14 
TK0 C46 S47 SING Y N 15 
TK0 C21 C18 SING N N 16 
TK0 C45 C43 SING Y N 17 
TK0 S47 C42 SING Y N 18 
TK0 C18 C19 DOUB Y N 19 
TK0 C18 C17 SING Y N 20 
TK0 C43 C42 DOUB Y N 21 
TK0 C43 C44 SING Y N 22 
TK0 C19 C20 SING Y N 23 
TK0 C42 C41 SING Y N 24 
TK0 C17 C16 DOUB Y N 25 
TK0 C44 C39 DOUB Y N 26 
TK0 C20 C15 DOUB Y N 27 
TK0 C16 C15 SING Y N 28 
TK0 C41 C40 DOUB Y N 29 
TK0 C15 C14 SING N N 30 
TK0 C39 C40 SING Y N 31 
TK0 C39 C38 SING N N 32 
TK0 S34 C14 SING Y N 33 
TK0 S34 C11 SING Y N 34 
TK0 C14 C13 DOUB Y N 35 
TK0 C38 N37 SING N N 36 
TK0 C11 N10 DOUB Y N 37 
TK0 C11 C12 SING Y N 38 
TK0 N10 C09 SING Y N 39 
TK0 C13 C12 SING Y N 40 
TK0 N37 C35 SING N N 41 
TK0 C12 C07 DOUB Y N 42 
TK0 C09 N08 DOUB Y N 43 
TK0 O36 C35 DOUB N N 44 
TK0 C35 C02 SING N N 45 
TK0 C07 N08 SING Y N 46 
TK0 C07 N04 SING N N 47 
TK0 C06 C05 SING N N 48 
TK0 C06 C01 SING N N 49 
TK0 C02 C01 SING N N 50 
TK0 C02 C03 SING N N 51 
TK0 C05 N04 SING N N 52 
TK0 N04 C03 SING N N 53 
TK0 C01 H1  SING N N 54 
TK0 C01 H2  SING N N 55 
TK0 C02 H3  SING N N 56 
TK0 C03 H4  SING N N 57 
TK0 C03 H5  SING N N 58 
TK0 C05 H6  SING N N 59 
TK0 C05 H7  SING N N 60 
TK0 C06 H8  SING N N 61 
TK0 C06 H9  SING N N 62 
TK0 C09 H10 SING N N 63 
TK0 C13 H11 SING N N 64 
TK0 C16 H12 SING N N 65 
TK0 C17 H13 SING N N 66 
TK0 C19 H14 SING N N 67 
TK0 C20 H15 SING N N 68 
TK0 C21 H16 SING N N 69 
TK0 C21 H17 SING N N 70 
TK0 C22 H18 SING N N 71 
TK0 C22 H19 SING N N 72 
TK0 C25 H20 SING N N 73 
TK0 C26 H21 SING N N 74 
TK0 C28 H22 SING N N 75 
TK0 C30 H23 SING N N 76 
TK0 C31 H24 SING N N 77 
TK0 C32 H25 SING N N 78 
TK0 C38 H26 SING N N 79 
TK0 C38 H27 SING N N 80 
TK0 C40 H28 SING N N 81 
TK0 C41 H29 SING N N 82 
TK0 C44 H30 SING N N 83 
TK0 C45 H31 SING N N 84 
TK0 C46 H32 SING N N 85 
TK0 N23 H33 SING N N 86 
TK0 N37 H34 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TK0 SMILES           ACDLabs              12.01 "O=C(NCc1ccc2sccc2c1)C1CCCN(C1)c1ncnc2sc(cc12)c1ccc(CCNC(=O)/C=C/c2cccnc2)cc1"                                                                                                                                                                                           
TK0 InChI            InChI                1.06  "InChI=1S/C37H34N6O2S2/c44-34(12-8-26-3-1-15-38-21-26)39-16-13-25-5-9-28(10-6-25)33-20-31-35(41-24-42-37(31)47-33)43-17-2-4-30(23-43)36(45)40-22-27-7-11-32-29(19-27)14-18-46-32/h1,3,5-12,14-15,18-21,24,30H,2,4,13,16-17,22-23H2,(H,39,44)(H,40,45)/b12-8+/t30-/m0/s1" 
TK0 InChIKey         InChI                1.06  XNJMWNJMIWAGCW-CRZWDPOYSA-N                                                                                                                                                                                                                                              
TK0 SMILES_CANONICAL CACTVS               3.385 "O=C(NCCc1ccc(cc1)c2sc3ncnc(N4CCC[C@@H](C4)C(=O)NCc5ccc6sccc6c5)c3c2)\C=C\c7cccnc7"                                                                                                                                                                                      
TK0 SMILES           CACTVS               3.385 "O=C(NCCc1ccc(cc1)c2sc3ncnc(N4CCC[CH](C4)C(=O)NCc5ccc6sccc6c5)c3c2)C=Cc7cccnc7"                                                                                                                                                                                          
TK0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)/C=C/C(=O)NCCc2ccc(cc2)c3cc4c(ncnc4s3)N5CCC[C@@H](C5)C(=O)NCc6ccc7c(c6)ccs7"                                                                                                                                                                                  
TK0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)C=CC(=O)NCCc2ccc(cc2)c3cc4c(ncnc4s3)N5CCCC(C5)C(=O)NCc6ccc7c(c6)ccs7"                                                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TK0 "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-N-[(1-benzothiophen-5-yl)methyl]-1-[6-(4-{2-[(2E)-3-(pyridin-3-yl)prop-2-enamido]ethyl}phenyl)thieno[2,3-d]pyrimidin-4-yl]piperidine-3-carboxamide"          
TK0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-~{N}-(1-benzothiophen-5-ylmethyl)-1-[6-[4-[2-[[(~{E})-3-pyridin-3-ylprop-2-enoyl]amino]ethyl]phenyl]thieno[2,3-d]pyrimidin-4-yl]piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TK0 "Create component" 2022-07-25 RCSB 
TK0 "Initial release"  2023-08-02 RCSB 
# 
