data_QH0
# 
_chem_comp.id                                    QH0 
_chem_comp.name                                  "(phenylmethyl) N-[(2S)-4-methyl-1-[[(2S)-4-nitro-1-[(3R)-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H32 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        448.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QH0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BDH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QH0 C13 C1  C 0  1 N N R N N N 17.242 10.045 26.202 -4.403 1.952  -0.308 C13 QH0 1  
QH0 C15 C2  C 0  1 N N N N N N 18.274 8.806  27.917 -6.466 3.077  0.169  C15 QH0 2  
QH0 C17 C3  C 0  1 N N N N N N 16.307 9.924  27.379 -4.408 2.524  1.092  C17 QH0 3  
QH0 C20 C4  C 0  1 N N N N N N 18.919 11.679 22.060 -2.587 -2.450 1.187  C20 QH0 4  
QH0 C26 C5  C 0  1 N N N N N N 20.190 13.384 30.132 4.823  1.029  -0.457 C26 QH0 5  
QH0 C28 C6  C 0  1 Y N N N N N 21.401 11.448 28.892 6.809  -0.306 0.279  C28 QH0 6  
QH0 O01 O1  O 0  1 N N N N N N 18.699 13.884 28.000 2.501  1.116  -1.675 O01 QH0 7  
QH0 C02 C7  C 0  1 N N N N N N 19.796 14.413 27.976 2.508  0.479  -0.641 C02 QH0 8  
QH0 N03 N1  N 0  1 N N N N N N 20.249 15.065 26.898 1.379  -0.114 -0.206 N03 QH0 9  
QH0 C04 C8  C 0  1 N N S N N N 19.590 14.903 25.613 0.141  0.010  -0.981 C04 QH0 10 
QH0 C05 C9  C 0  1 N N N N N N 20.363 15.722 24.535 0.112  -1.064 -2.071 C05 QH0 11 
QH0 C06 C10 C 0  1 N N N N N N 20.435 17.206 24.861 1.242  -0.808 -3.069 C06 QH0 12 
QH0 C07 C11 C 0  1 N N N N N N 21.165 18.037 23.753 1.291  -1.949 -4.088 C07 QH0 13 
QH0 C08 C12 C 0  1 N N N N N N 19.069 17.824 25.024 0.991  0.514  -3.797 C08 QH0 14 
QH0 C09 C13 C 0  1 N N N N N N 19.470 13.445 25.206 -1.044 -0.169 -0.067 C09 QH0 15 
QH0 N10 N2  N 0  1 N N N N N N 18.306 12.950 24.728 -2.294 -0.094 -0.564 N10 QH0 16 
QH0 C11 C14 C 0  1 N N S N N N 18.079 11.617 24.372 -3.446 -0.268 0.324  C11 QH0 17 
QH0 C12 C15 C 0  1 N N N N N N 16.957 11.119 25.241 -4.662 0.444  -0.272 C12 QH0 18 
QH0 C14 C16 C 0  1 N N N N N N 18.600 9.848  26.852 -5.564 2.683  -1.021 C14 QH0 19 
QH0 N16 N3  N 0  1 N N N N N N 16.901 9.132  28.271 -5.572 3.152  1.330  N16 QH0 20 
QH0 O18 O2  O 0  1 N N N N N N 15.174 10.366 27.501 -3.495 2.429  1.884  O18 QH0 21 
QH0 C19 C17 C 0  1 N N N N N N 17.697 11.468 22.889 -3.753 -1.759 0.477  C19 QH0 22 
QH0 N21 N4  N 1  1 N N N N N N 19.072 10.693 20.890 -2.880 -3.877 1.332  N21 QH0 23 
QH0 O22 O3  O -1 1 N N N N N N 20.040 10.866 20.181 -2.024 -4.705 1.075  O22 QH0 24 
QH0 O23 O4  O 0  1 N N N N N N 18.259 9.814  20.712 -3.980 -4.238 1.712  O23 QH0 25 
QH0 O24 O5  O 0  1 N N N N N N 20.408 12.695 25.312 -0.872 -0.379 1.115  O24 QH0 26 
QH0 O25 O6  O 0  1 N N N N N N 20.614 14.329 29.072 3.645  0.364  0.071  O25 QH0 27 
QH0 C27 C18 C 0  1 Y N N N N N 20.557 11.925 29.951 5.990  0.792  0.467  C27 QH0 28 
QH0 C29 C19 C 0  1 Y N N N N N 21.742 10.074 28.783 7.876  -0.526 1.130  C29 QH0 29 
QH0 C30 C20 C 0  1 Y N N N N N 21.277 9.136  29.739 8.124  0.351  2.169  C30 QH0 30 
QH0 C31 C21 C 0  1 Y N N N N N 20.459 9.585  30.808 7.305  1.449  2.357  C31 QH0 31 
QH0 C32 C22 C 0  1 Y N N N N N 20.090 10.953 30.883 6.242  1.672  1.503  C32 QH0 32 
QH0 H1  H1  H 0  1 N N N N N N 17.081 9.117  25.634 -3.456 2.165  -0.804 H1  QH0 33 
QH0 H2  H2  H 0  1 N N N N N N 18.348 7.786  27.511 -6.930 4.046  -0.013 H2  QH0 34 
QH0 H3  H3  H 0  1 N N N N N N 18.942 8.904  28.786 -7.231 2.317  0.331  H3  QH0 35 
QH0 H4  H4  H 0  1 N N N N N N 19.799 11.578 22.712 -1.677 -2.324 0.599  H4  QH0 36 
QH0 H5  H5  H 0  1 N N N N N N 18.883 12.698 21.648 -2.447 -2.005 2.172  H5  QH0 37 
QH0 H6  H6  H 0  1 N N N N N N 20.641 13.723 31.076 5.055  0.629  -1.444 H6  QH0 38 
QH0 H7  H7  H 0  1 N N N N N N 19.094 13.442 30.207 4.633  2.099  -0.534 H7  QH0 39 
QH0 H8  H8  H 0  1 N N N N N N 21.784 12.148 28.164 6.613  -0.994 -0.530 H8  QH0 40 
QH0 H9  H9  H 0  1 N N N N N N 21.044 15.666 26.977 1.385  -0.624 0.619  H9  QH0 41 
QH0 H10 H10 H 0  1 N N N N N N 18.575 15.321 25.680 0.099  0.997  -1.442 H10 QH0 42 
QH0 H11 H11 H 0  1 N N N N N N 19.853 15.599 23.568 0.243  -2.046 -1.617 H11 QH0 43 
QH0 H12 H12 H 0  1 N N N N N N 21.387 15.328 24.462 -0.846 -1.028 -2.589 H12 QH0 44 
QH0 H13 H13 H 0  1 N N N N N N 20.992 17.330 25.801 2.192  -0.755 -2.537 H13 QH0 45 
QH0 H14 H14 H 0  1 N N N N N N 21.186 19.098 24.043 0.341  -2.002 -4.620 H14 QH0 46 
QH0 H15 H15 H 0  1 N N N N N N 22.195 17.668 23.637 2.096  -1.767 -4.799 H15 QH0 47 
QH0 H16 H16 H 0  1 N N N N N N 20.627 17.929 22.799 1.470  -2.891 -3.569 H16 QH0 48 
QH0 H17 H17 H 0  1 N N N N N N 18.508 17.276 25.796 0.041  0.461  -4.329 H17 QH0 49 
QH0 H18 H18 H 0  1 N N N N N N 19.176 18.876 25.326 0.956  1.327  -3.072 H18 QH0 50 
QH0 H19 H19 H 0  1 N N N N N N 18.526 17.771 24.069 1.796  0.696  -4.509 H19 QH0 51 
QH0 H20 H20 H 0  1 N N N N N N 17.545 13.590 24.620 -2.432 0.074  -1.509 H20 QH0 52 
QH0 H21 H21 H 0  1 N N N N N N 18.976 11.010 24.564 -3.219 0.158  1.302  H21 QH0 53 
QH0 H22 H22 H 0  1 N N N N N N 16.584 11.980 25.816 -5.540 0.241  0.342  H22 QH0 54 
QH0 H23 H23 H 0  1 N N N N N N 16.164 10.754 24.571 -4.836 0.081  -1.285 H23 QH0 55 
QH0 H24 H24 H 0  1 N N N N N N 19.340 9.469  26.132 -5.204 3.568  -1.546 H24 QH0 56 
QH0 H25 H25 H 0  1 N Y N N N N 18.970 10.781 27.302 -6.088 2.013  -1.703 H25 QH0 57 
QH0 H26 H26 H 0  1 N N N N N N 16.450 8.797  29.098 -5.792 3.599  2.163  H26 QH0 58 
QH0 H27 H27 H 0  1 N N N N N N 16.936 12.217 22.625 -3.893 -2.204 -0.509 H27 QH0 59 
QH0 H28 H28 H 0  1 N N N N N N 17.296 10.459 22.709 -4.662 -1.885 1.065  H28 QH0 60 
QH0 H29 H29 H 0  1 N N N N N N 22.362 9.740  27.964 8.516  -1.384 0.983  H29 QH0 61 
QH0 H30 H30 H 0  1 N N N N N N 21.542 8.092  29.655 8.957  0.178  2.834  H30 QH0 62 
QH0 H31 H31 H 0  1 N N N N N N 20.119 8.889  31.561 7.499  2.134  3.169  H31 QH0 63 
QH0 H32 H32 H 0  1 N N N N N N 19.430 11.270 31.677 5.602  2.530  1.650  H32 QH0 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QH0 O22 N21 SING N N 1  
QH0 O23 N21 DOUB N N 2  
QH0 N21 C20 SING N N 3  
QH0 C20 C19 SING N N 4  
QH0 C19 C11 SING N N 5  
QH0 C07 C06 SING N N 6  
QH0 C11 N10 SING N N 7  
QH0 C11 C12 SING N N 8  
QH0 C05 C06 SING N N 9  
QH0 C05 C04 SING N N 10 
QH0 N10 C09 SING N N 11 
QH0 C06 C08 SING N N 12 
QH0 C09 O24 DOUB N N 13 
QH0 C09 C04 SING N N 14 
QH0 C12 C13 SING N N 15 
QH0 C04 N03 SING N N 16 
QH0 C13 C14 SING N N 17 
QH0 C13 C17 SING N N 18 
QH0 C14 C15 SING N N 19 
QH0 N03 C02 SING N N 20 
QH0 C17 O18 DOUB N N 21 
QH0 C17 N16 SING N N 22 
QH0 C15 N16 SING N N 23 
QH0 C02 O01 DOUB N N 24 
QH0 C02 O25 SING N N 25 
QH0 C29 C28 DOUB Y N 26 
QH0 C29 C30 SING Y N 27 
QH0 C28 C27 SING Y N 28 
QH0 O25 C26 SING N N 29 
QH0 C30 C31 DOUB Y N 30 
QH0 C27 C26 SING N N 31 
QH0 C27 C32 DOUB Y N 32 
QH0 C31 C32 SING Y N 33 
QH0 C13 H1  SING N N 34 
QH0 C15 H2  SING N N 35 
QH0 C15 H3  SING N N 36 
QH0 C20 H4  SING N N 37 
QH0 C20 H5  SING N N 38 
QH0 C26 H6  SING N N 39 
QH0 C26 H7  SING N N 40 
QH0 C28 H8  SING N N 41 
QH0 N03 H9  SING N N 42 
QH0 C04 H10 SING N N 43 
QH0 C05 H11 SING N N 44 
QH0 C05 H12 SING N N 45 
QH0 C06 H13 SING N N 46 
QH0 C07 H14 SING N N 47 
QH0 C07 H15 SING N N 48 
QH0 C07 H16 SING N N 49 
QH0 C08 H17 SING N N 50 
QH0 C08 H18 SING N N 51 
QH0 C08 H19 SING N N 52 
QH0 N10 H20 SING N N 53 
QH0 C11 H21 SING N N 54 
QH0 C12 H22 SING N N 55 
QH0 C12 H23 SING N N 56 
QH0 C14 H24 SING N N 57 
QH0 C14 H25 SING N N 58 
QH0 N16 H26 SING N N 59 
QH0 C19 H27 SING N N 60 
QH0 C19 H28 SING N N 61 
QH0 C29 H29 SING N N 62 
QH0 C30 H30 SING N N 63 
QH0 C31 H31 SING N N 64 
QH0 C32 H32 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QH0 InChI            InChI                1.06    "InChI=1S/C22H32N4O6/c1-15(2)12-19(25-22(29)32-14-16-6-4-3-5-7-16)21(28)24-18(9-11-26(30)31)13-17-8-10-23-20(17)27/h3-7,15,17-19H,8-14H2,1-2H3,(H,23,27)(H,24,28)(H,25,29)/t17-,18-,19+/m1/s1" 
QH0 InChIKey         InChI                1.06    AHDULYSHSMKYBB-QRVBRYPASA-N                                                                                                                                                                    
QH0 SMILES_CANONICAL CACTVS               3.385   "CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@H](CC[N+]([O-])=O)C[C@H]2CCNC2=O"                                                                                                                       
QH0 SMILES           CACTVS               3.385   "CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC[N+]([O-])=O)C[CH]2CCNC2=O"                                                                                                                          
QH0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)C[C@@H](C(=O)N[C@H](CC[N+](=O)[O-])C[C@H]1CCNC1=O)NC(=O)OCc2ccccc2"                                                                                                                      
QH0 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(C)CC(C(=O)NC(CC[N+](=O)[O-])CC1CCNC1=O)NC(=O)OCc2ccccc2"                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           QH0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-[[(2~{S})-4-nitro-1-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QH0 "Create component"   2022-10-31 PDBE 
QH0 "Modify formula"     2022-11-01 PDBE 
QH0 "Initial release"    2023-11-08 RCSB 
QH0 "Other modification" 2024-01-16 PDBE 
QH0 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            QH0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
