data_OM0
# 
_chem_comp.id                                    OM0 
_chem_comp.name                                  "(1R,2S,3R,4R)-5-bromo-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H11 Br O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         C5a-bromo-valienide 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        255.063 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OM0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UZ1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OM0 O6  O1  O  0 1 N N N N N N 77.294 19.601 -8.979  -0.857 3.007  -0.845 O6  OM0 1  
OM0 C6  C1  C  0 1 N N N N N N 76.012 18.980 -9.090  -1.044 2.030  0.181  C6  OM0 2  
OM0 C5  C2  C  0 1 N N N N N N 75.004 19.807 -8.361  -0.028 0.929  0.016  C5  OM0 3  
OM0 C5A C3  C  0 1 N N N N N N 74.678 19.563 -7.134  -0.461 -0.289 -0.070 C5A OM0 4  
OM0 BR5 BR1 BR 0 0 N N N N N N 75.298 17.955 -6.232  -2.329 -0.575 0.004  BR5 OM0 5  
OM0 C1  C4  C  0 1 N N R N N N 73.880 20.441 -6.250  0.429  -1.488 -0.226 C1  OM0 6  
OM0 C2  C5  C  0 1 N N R N N N 73.744 21.854 -6.814  1.822  -1.054 -0.688 C2  OM0 7  
OM0 O2  O2  O  0 1 N N N N N N 72.685 22.507 -6.125  2.725  -2.157 -0.591 O2  OM0 8  
OM0 C3  C6  C  0 1 N N S N N N 73.434 21.771 -8.292  2.300  0.086  0.221  C3  OM0 9  
OM0 O3  O3  O  0 1 N N N N N N 73.171 23.112 -8.823  3.664  0.396  -0.076 O3  OM0 10 
OM0 C4  C7  C  0 1 N N R N N N 74.588 21.102 -9.030  1.421  1.312  -0.043 C4  OM0 11 
OM0 O4  O4  O  0 1 N N N N N N 74.291 20.924 -10.399 1.690  2.306  0.948  O4  OM0 12 
OM0 H1  H1  H  0 1 N N N N N N 77.940 19.080 -9.441  -1.479 3.747  -0.801 H1  OM0 13 
OM0 H2  H2  H  0 1 N N N N N N 75.730 18.905 -10.150 -0.918 2.498  1.157  H2  OM0 14 
OM0 H3  H3  H  0 1 N N N N N N 76.051 17.973 -8.649  -2.048 1.612  0.106  H3  OM0 15 
OM0 H4  H4  H  0 1 N N N N N N 74.330 20.484 -5.247  -0.002 -2.164 -0.965 H4  OM0 16 
OM0 H6  H6  H  0 1 N N N N N N 74.692 22.393 -6.670  1.775  -0.709 -1.720 H6  OM0 17 
OM0 H7  H7  H  0 1 N N N N N N 72.890 22.553 -5.199  2.473  -2.920 -1.128 H7  OM0 18 
OM0 H8  H8  H  0 1 N N N N N N 72.535 21.151 -8.424  2.212  -0.216 1.264  H8  OM0 19 
OM0 H9  H9  H  0 1 N N N N N N 72.449 23.506 -8.347  4.031  1.110  0.463  H9  OM0 20 
OM0 H10 H10 H  0 1 N N N N N N 75.447 21.786 -8.956  1.648  1.718  -1.029 H10 OM0 21 
OM0 H11 H11 H  0 1 N N N N N N 74.036 21.756 -10.779 1.174  3.117  0.842  H11 OM0 22 
OM0 O1  O5  O  0 1 N Y N N N N 72.548 19.791 -6.188  0.537  -2.164 1.028  O1  OM0 23 
OM0 H5  H5  H  0 1 N Y N N N N 71.971 20.302 -5.632  -0.307 -2.477 1.380  H5  OM0 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OM0 O4  C4  SING N N 1  
OM0 C6  O6  SING N N 2  
OM0 C6  C5  SING N N 3  
OM0 C4  C5  SING N N 4  
OM0 C4  C3  SING N N 5  
OM0 O3  C3  SING N N 6  
OM0 C5  C5A DOUB N N 7  
OM0 C3  C2  SING N N 8  
OM0 C5A C1  SING N N 9  
OM0 C5A BR5 SING N N 10 
OM0 C2  C1  SING N N 11 
OM0 C2  O2  SING N N 12 
OM0 O6  H1  SING N N 13 
OM0 C6  H2  SING N N 14 
OM0 C6  H3  SING N N 15 
OM0 C1  H4  SING N N 16 
OM0 C2  H6  SING N N 17 
OM0 O2  H7  SING N N 18 
OM0 C3  H8  SING N N 19 
OM0 O3  H9  SING N N 20 
OM0 C4  H10 SING N N 21 
OM0 O4  H11 SING N N 22 
OM0 C1  O1  SING N N 23 
OM0 O1  H5  SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OM0 SMILES           ACDLabs              12.01 "OC1C(CO)=C(Br)C(O)C(O)C1O"                                                             
OM0 InChI            InChI                1.03  "InChI=1S/C7H11BrO5/c8-3-2(1-9)4(10)6(12)7(13)5(3)11/h4-7,9-13H,1H2/t4-,5+,6+,7+/m1/s1" 
OM0 InChIKey         InChI                1.03  FJUNXCSYOUCSRK-BWBBJGPYSA-N                                                             
OM0 SMILES_CANONICAL CACTVS               3.385 "OCC1=C(Br)[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O"                                           
OM0 SMILES           CACTVS               3.385 "OCC1=C(Br)[CH](O)[CH](O)[CH](O)[CH]1O"                                                 
OM0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C1=C([C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)Br)O"                                        
OM0 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1=C(C(C(C(C1O)O)O)O)Br)O"                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OM0 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,3R,4R)-5-bromo-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol"                
OM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},3~{R},4~{R})-5-bromanyl-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OM0 "Create component" 2022-05-12 RCSB 
OM0 "Modify synonyms"  2022-05-16 RCSB 
OM0 "Initial release"  2023-04-05 RCSB 
OM0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      OM0 
_pdbx_chem_comp_synonyms.name         C5a-bromo-valienide 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OM0 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
