data_KJ0
# 
_chem_comp.id                                    KJ0 
_chem_comp.name                                  "N-[(2S)-3-cyclohexyl-1-[[(2S,3S)-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-benzofuran-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        552.662 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KJ0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GX2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KJ0 C10 C1  C 0 1 N N N N N N -11.410 -17.947 16.277 -2.630 -3.826 -2.372 C10 KJ0 1  
KJ0 C15 C2  C 0 1 Y N N N N N -15.865 -18.639 22.238 -5.892 2.074  1.059  C15 KJ0 2  
KJ0 C17 C3  C 0 1 Y N N N N N -16.023 -18.218 24.632 -7.651 3.686  0.925  C17 KJ0 3  
KJ0 C20 C4  C 0 1 Y N N N N N -17.110 -19.245 22.243 -5.346 2.558  -0.145 C20 KJ0 4  
KJ0 C24 C5  C 0 1 N N S N N N -15.769 -23.326 15.229 2.826  -0.131 -0.484 C24 KJ0 5  
KJ0 C14 C6  C 0 1 Y N N N N N -15.442 -18.710 20.862 -5.009 0.989  1.486  C14 KJ0 6  
KJ0 C18 C7  C 0 1 Y N N N N N -17.286 -18.833 24.644 -7.116 4.167  -0.263 C18 KJ0 7  
KJ0 C19 C8  C 0 1 Y N N N N N -17.834 -19.348 23.464 -5.974 3.612  -0.798 C19 KJ0 8  
KJ0 C25 C9  C 0 1 N N N N N N -17.259 -23.515 14.871 3.873  -0.739 0.451  C25 KJ0 9  
KJ0 C2  C10 C 0 1 N N N N N N -15.039 -21.359 16.582 0.398  -0.274 -0.642 C2  KJ0 10 
KJ0 C3  C11 C 0 1 N N S N N N -14.786 -19.856 16.696 -0.899 -1.005 -0.409 C3  KJ0 11 
KJ0 C4  C12 C 0 1 N N N N N N -13.321 -19.582 16.332 -1.103 -2.045 -1.512 C4  KJ0 12 
KJ0 C5  C13 C 0 1 N N N N N N -12.861 -18.144 16.761 -2.355 -2.871 -1.209 C5  KJ0 13 
KJ0 C6  C14 C 0 1 N N N N N N -13.813 -17.110 16.138 -2.135 -3.678 0.072  C6  KJ0 14 
KJ0 C7  C15 C 0 1 N N N N N N -13.325 -15.677 16.417 -3.387 -4.504 0.375  C7  KJ0 15 
KJ0 C8  C16 C 0 1 N N N N N N -11.879 -15.469 15.930 -3.662 -5.459 -0.788 C8  KJ0 16 
KJ0 C9  C17 C 0 1 N N N N N N -10.917 -16.511 16.520 -3.882 -4.652 -2.069 C9  KJ0 17 
KJ0 C12 C18 C 0 1 N N N N N N -16.353 -19.629 18.632 -2.921 -0.055 0.564  C12 KJ0 18 
KJ0 C13 C19 C 0 1 Y N N N N N -16.458 -19.339 20.139 -4.034 0.904  0.545  C13 KJ0 19 
KJ0 C16 C20 C 0 1 Y N N N N N -15.305 -18.115 23.435 -7.051 2.651  1.584  C16 KJ0 20 
KJ0 C26 C21 C 0 1 N N S N N N -18.245 -22.841 15.935 3.405  -0.600 1.901  C26 KJ0 21 
KJ0 C27 C22 C 0 1 N N N N N N -18.126 -23.519 17.191 3.349  0.882  2.277  C27 KJ0 22 
KJ0 C28 C23 C 0 1 N N N N N N -18.987 -24.689 17.310 3.150  0.990  3.794  C28 KJ0 23 
KJ0 C29 C24 C 0 1 N N N N N N -20.423 -24.313 17.307 4.410  0.478  4.491  C29 KJ0 24 
KJ0 C31 C25 C 0 1 N N N N N N -19.717 -22.783 15.333 4.363  -1.322 2.805  C31 KJ0 25 
KJ0 C33 C26 C 0 1 N N S N N N -14.874 -23.889 14.130 3.326  -0.206 -1.928 C33 KJ0 26 
KJ0 C35 C27 C 0 1 N N N N N N -15.208 -25.388 13.963 4.536  0.679  -2.087 C35 KJ0 27 
KJ0 C37 C28 C 0 1 N N N N N N -16.374 -27.162 12.536 5.562  2.881  -2.270 C37 KJ0 28 
KJ0 C38 C29 C 0 1 N N N N N N -17.691 -27.608 13.169 5.289  4.325  -2.695 C38 KJ0 29 
KJ0 C39 C30 C 0 1 N N N N N N -17.622 -27.325 11.664 5.814  4.027  -1.289 C39 KJ0 30 
KJ0 N11 N1  N 0 1 N N N N N N -14.998 -19.567 18.083 -2.008 -0.049 -0.428 N11 KJ0 31 
KJ0 N23 N2  N 0 1 N N N N N N -15.532 -21.904 15.306 1.571  -0.877 -0.363 N23 KJ0 32 
KJ0 N30 N3  N 0 1 N N N N N N -20.843 -23.550 16.052 4.785  -0.831 3.971  N30 KJ0 33 
KJ0 N36 N4  N 0 1 N N N N N N -15.995 -25.767 12.785 4.405  2.018  -2.020 N36 KJ0 34 
KJ0 O1  O1  O 0 1 N N N N N N -14.862 -22.083 17.509 0.387  0.857  -1.080 O1  KJ0 35 
KJ0 O21 O2  O 0 1 Y N N N N N -17.444 -19.665 20.971 -4.245 1.830  -0.415 O21 KJ0 36 
KJ0 O22 O3  O 0 1 N N N N N N -17.290 -19.903 17.956 -2.823 -0.856 1.474  O22 KJ0 37 
KJ0 O32 O4  O 0 1 N N N N N N -19.941 -22.158 14.353 4.774  -2.408 2.457  O32 KJ0 38 
KJ0 O34 O5  O 0 1 N N N N N N -15.054 -23.168 12.932 3.677  -1.555 -2.241 O34 KJ0 39 
KJ0 O40 O6  O 0 1 N N N N N N -14.886 -26.204 14.774 5.627  0.185  -2.275 O40 KJ0 40 
KJ0 H1  H1  H 0 1 N N N N N N -11.362 -18.162 15.199 -2.786 -3.251 -3.285 H1  KJ0 41 
KJ0 H2  H2  H 0 1 N N N N N N -10.756 -18.645 16.820 -1.778 -4.493 -2.504 H2  KJ0 42 
KJ0 H3  H3  H 0 1 N N N N N N -15.606 -17.824 25.547 -8.547 4.133  1.330  H3  KJ0 43 
KJ0 H4  H4  H 0 1 N N N N N N -15.549 -23.820 16.187 2.657  0.911  -0.211 H4  KJ0 44 
KJ0 H5  H5  H 0 1 N N N N N N -14.508 -18.343 20.462 -5.111 0.380  2.372  H5  KJ0 45 
KJ0 H6  H6  H 0 1 N N N N N N -17.837 -18.909 25.570 -7.602 4.986  -0.773 H6  KJ0 46 
KJ0 H7  H7  H 0 1 N N N N N N -18.804 -19.823 23.480 -5.568 3.996  -1.722 H7  KJ0 47 
KJ0 H8  H8  H 0 1 N N N N N N -17.443 -23.062 13.886 4.005  -1.794 0.211  H8  KJ0 48 
KJ0 H9  H9  H 0 1 N N N N N N -17.475 -24.593 14.826 4.821  -0.216 0.323  H9  KJ0 49 
KJ0 H10 H10 H 0 1 N N N N N N -15.465 -19.291 16.040 -0.866 -1.504 0.559  H10 KJ0 50 
KJ0 H11 H11 H 0 1 N N N N N N -12.686 -20.323 16.839 -1.225 -1.540 -2.470 H11 KJ0 51 
KJ0 H12 H12 H 0 1 N N N N N N -13.202 -19.681 15.243 -0.235 -2.703 -1.556 H12 KJ0 52 
KJ0 H13 H13 H 0 1 N N N N N N -12.897 -18.065 17.858 -3.207 -2.204 -1.077 H13 KJ0 53 
KJ0 H14 H14 H 0 1 N N N N N N -14.817 -17.239 16.569 -1.283 -4.345 -0.060 H14 KJ0 54 
KJ0 H15 H15 H 0 1 N N N N N N -13.857 -17.270 15.051 -1.939 -2.998 0.901  H15 KJ0 55 
KJ0 H16 H16 H 0 1 N N N N N N -13.368 -15.489 17.500 -3.231 -5.079 1.288  H16 KJ0 56 
KJ0 H17 H17 H 0 1 N N N N N N -13.984 -14.967 15.895 -4.239 -3.837 0.507  H17 KJ0 57 
KJ0 H18 H18 H 0 1 N N N N N N -11.859 -15.548 14.833 -2.810 -6.126 -0.920 H18 KJ0 58 
KJ0 H19 H19 H 0 1 N N N N N N -11.544 -14.466 16.231 -4.554 -6.047 -0.572 H19 KJ0 59 
KJ0 H20 H20 H 0 1 N N N N N N -9.930  -16.390 16.051 -4.734 -3.985 -1.937 H20 KJ0 60 
KJ0 H21 H21 H 0 1 N N N N N N -10.831 -16.343 17.604 -4.078 -5.332 -2.898 H21 KJ0 61 
KJ0 H22 H22 H 0 1 N N N N N N -14.334 -17.642 23.421 -7.471 2.280  2.507  H22 KJ0 62 
KJ0 H23 H23 H 0 1 N N N N N N -17.911 -21.800 16.061 2.412  -1.038 2.004  H23 KJ0 63 
KJ0 H24 H24 H 0 1 N N N N N N -17.082 -23.843 17.313 4.283  1.368  1.995  H24 KJ0 64 
KJ0 H25 H25 H 0 1 N N N N N N -18.387 -22.813 17.993 2.516  1.360  1.763  H25 KJ0 65 
KJ0 H26 H26 H 0 1 N N N N N N -18.793 -25.363 16.463 2.978  2.031  4.067  H26 KJ0 66 
KJ0 H27 H27 H 0 1 N N N N N N -18.756 -25.208 18.252 2.293  0.387  4.094  H27 KJ0 67 
KJ0 H28 H28 H 0 1 N N N N N N -20.620 -23.679 18.184 5.227  1.180  4.321  H28 KJ0 68 
KJ0 H29 H29 H 0 1 N N N N N N -21.025 -25.231 17.376 4.222  0.396  5.562  H29 KJ0 69 
KJ0 H30 H30 H 0 1 N N N N N N -13.828 -23.808 14.461 2.539  0.131  -2.603 H30 KJ0 70 
KJ0 H31 H31 H 0 1 N N N N N N -15.580 -27.916 12.431 6.433  2.386  -2.701 H31 KJ0 71 
KJ0 H32 H32 H 0 1 N N N N N N -18.241 -26.925 13.832 5.980  4.781  -3.404 H32 KJ0 72 
KJ0 H33 H33 H 0 1 N N N N N N -17.806 -28.641 13.530 4.247  4.634  -2.788 H33 KJ0 73 
KJ0 H34 H34 H 0 1 N N N N N N -18.122 -26.438 11.247 5.118  4.140  -0.457 H34 KJ0 74 
KJ0 H35 H35 H 0 1 N N N N N N -17.686 -28.154 10.944 6.851  4.287  -1.073 H35 KJ0 75 
KJ0 H36 H36 H 0 1 N N N N N N -14.226 -19.325 18.671 -2.086 0.590  -1.154 H36 KJ0 76 
KJ0 H37 H37 H 0 1 N N N N N N -15.697 -21.309 14.519 1.584  -1.806 -0.081 H37 KJ0 77 
KJ0 H38 H38 H 0 1 N N N N N N -21.786 -23.549 15.719 5.379  -1.380 4.507  H38 KJ0 78 
KJ0 H39 H39 H 0 1 N N N N N N -16.279 -25.060 12.138 3.544  2.412  -1.807 H39 KJ0 79 
KJ0 H40 H40 H 0 1 N N N N N N -14.839 -22.254 13.077 4.374  -1.920 -1.679 H40 KJ0 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KJ0 C39 C37 SING N N 1  
KJ0 C39 C38 SING N N 2  
KJ0 C37 N36 SING N N 3  
KJ0 C37 C38 SING N N 4  
KJ0 N36 C35 SING N N 5  
KJ0 O34 C33 SING N N 6  
KJ0 C35 C33 SING N N 7  
KJ0 C35 O40 DOUB N N 8  
KJ0 C33 C24 SING N N 9  
KJ0 O32 C31 DOUB N N 10 
KJ0 C25 C24 SING N N 11 
KJ0 C25 C26 SING N N 12 
KJ0 C24 N23 SING N N 13 
KJ0 N23 C2  SING N N 14 
KJ0 C31 C26 SING N N 15 
KJ0 C31 N30 SING N N 16 
KJ0 C8  C7  SING N N 17 
KJ0 C8  C9  SING N N 18 
KJ0 C26 C27 SING N N 19 
KJ0 N30 C29 SING N N 20 
KJ0 C6  C7  SING N N 21 
KJ0 C6  C5  SING N N 22 
KJ0 C10 C9  SING N N 23 
KJ0 C10 C5  SING N N 24 
KJ0 C4  C3  SING N N 25 
KJ0 C4  C5  SING N N 26 
KJ0 C2  C3  SING N N 27 
KJ0 C2  O1  DOUB N N 28 
KJ0 C3  N11 SING N N 29 
KJ0 C27 C28 SING N N 30 
KJ0 C29 C28 SING N N 31 
KJ0 O22 C12 DOUB N N 32 
KJ0 N11 C12 SING N N 33 
KJ0 C12 C13 SING N N 34 
KJ0 C13 C14 DOUB Y N 35 
KJ0 C13 O21 SING Y N 36 
KJ0 C14 C15 SING Y N 37 
KJ0 O21 C20 SING Y N 38 
KJ0 C15 C20 DOUB Y N 39 
KJ0 C15 C16 SING Y N 40 
KJ0 C20 C19 SING Y N 41 
KJ0 C16 C17 DOUB Y N 42 
KJ0 C19 C18 DOUB Y N 43 
KJ0 C17 C18 SING Y N 44 
KJ0 C10 H1  SING N N 45 
KJ0 C10 H2  SING N N 46 
KJ0 C17 H3  SING N N 47 
KJ0 C24 H4  SING N N 48 
KJ0 C14 H5  SING N N 49 
KJ0 C18 H6  SING N N 50 
KJ0 C19 H7  SING N N 51 
KJ0 C25 H8  SING N N 52 
KJ0 C25 H9  SING N N 53 
KJ0 C3  H10 SING N N 54 
KJ0 C4  H11 SING N N 55 
KJ0 C4  H12 SING N N 56 
KJ0 C5  H13 SING N N 57 
KJ0 C6  H14 SING N N 58 
KJ0 C6  H15 SING N N 59 
KJ0 C7  H16 SING N N 60 
KJ0 C7  H17 SING N N 61 
KJ0 C8  H18 SING N N 62 
KJ0 C8  H19 SING N N 63 
KJ0 C9  H20 SING N N 64 
KJ0 C9  H21 SING N N 65 
KJ0 C16 H22 SING N N 66 
KJ0 C26 H23 SING N N 67 
KJ0 C27 H24 SING N N 68 
KJ0 C27 H25 SING N N 69 
KJ0 C28 H26 SING N N 70 
KJ0 C28 H27 SING N N 71 
KJ0 C29 H28 SING N N 72 
KJ0 C29 H29 SING N N 73 
KJ0 C33 H30 SING N N 74 
KJ0 C37 H31 SING N N 75 
KJ0 C38 H32 SING N N 76 
KJ0 C38 H33 SING N N 77 
KJ0 C39 H34 SING N N 78 
KJ0 C39 H35 SING N N 79 
KJ0 N11 H36 SING N N 80 
KJ0 N23 H37 SING N N 81 
KJ0 N30 H38 SING N N 82 
KJ0 N36 H39 SING N N 83 
KJ0 O34 H40 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KJ0 InChI            InChI                1.06  "InChI=1S/C30H40N4O6/c35-26(30(39)32-21-12-13-21)22(16-20-10-6-14-31-27(20)36)33-28(37)23(15-18-7-2-1-3-8-18)34-29(38)25-17-19-9-4-5-11-24(19)40-25/h4-5,9,11,17-18,20-23,26,35H,1-3,6-8,10,12-16H2,(H,31,36)(H,32,39)(H,33,37)(H,34,38)/t20-,22-,23-,26-/m0/s1" 
KJ0 InChIKey         InChI                1.06  FLHCDUBGBDAQOK-SZBRSHHCSA-N                                                                                                                                                                                                                                      
KJ0 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]([C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NC5CC5"                                                                                                                                                                           
KJ0 SMILES           CACTVS               3.385 "O[CH]([CH](C[CH]1CCCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NC5CC5"                                                                                                                                                                                 
KJ0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C(=O)N[C@@H](CC3CCCCC3)C(=O)N[C@@H](C[C@@H]4CCCNC4=O)[C@@H](C(=O)NC5CC5)O"                                                                                                                                                                     
KJ0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C(=O)NC(CC3CCCCC3)C(=O)NC(CC4CCCNC4=O)C(C(=O)NC5CC5)O"                                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           KJ0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-cyclohexyl-1-[[(2~{S},3~{S})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-benzofuran-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KJ0 "Create component" 2022-09-22 PDBJ 
KJ0 "Initial release"  2023-09-20 RCSB 
KJ0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            KJ0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C33 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
