data_JY0
# 
_chem_comp.id                                    JY0 
_chem_comp.name                                  "benzyl [(2S,3S)-3-tert-butoxy-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxobutan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H35 N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        449.541 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JY0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TQL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JY0 C1   C1  C 0 1 N N N N N N -10.646 -18.667 -18.778 4.116  1.154  -0.960 C1   JY0 1  
JY0 C11  C2  C 0 1 N N N N N N -5.929  -13.321 -18.208 0.704  -3.767 -0.336 C11  JY0 2  
JY0 C12  C3  C 0 1 N N N N N N -9.943  -16.327 -18.266 1.889  0.398  -0.558 C12  JY0 3  
JY0 C13  C4  C 0 1 N N N N N N -5.307  -12.094 -18.874 2.087  -3.191 -0.649 C13  JY0 4  
JY0 C14  C5  C 0 1 N N S N N N -9.351  -13.967 -17.971 -0.420 -0.345 -0.319 C14  JY0 5  
JY0 C15  C6  C 0 1 N N N N N N -10.751 -13.391 -17.991 -1.451 -0.260 0.777  C15  JY0 6  
JY0 C16  C7  C 0 1 N N N N N N -4.940  -14.474 -18.244 0.133  -4.432 -1.590 C16  JY0 7  
JY0 C17  C8  C 0 1 N N S N N N -12.563 -12.272 -16.860 -3.727 0.166  1.535  C17  JY0 8  
JY0 C18  C9  C 0 1 N N N N N N -6.237  -13.002 -16.748 0.825  -4.805 0.782  C18  JY0 9  
JY0 C19  C10 C 0 1 N N N N N N -13.479 -13.020 -15.869 -4.911 0.964  0.985  C19  JY0 10 
JY0 C2   C11 C 0 1 Y N N N N N -12.093 -18.456 -19.195 5.408  1.370  -0.215 C2   JY0 11 
JY0 C20  C12 C 0 1 N N S N N N -13.522 -14.501 -16.236 -4.439 2.361  0.577  C20  JY0 12 
JY0 C21  C13 C 0 1 N N N N N N -14.317 -14.742 -17.508 -5.625 3.199  0.045  C21  JY0 13 
JY0 C22  C14 C 0 1 N N N N N N -15.145 -16.001 -17.240 -5.530 2.949  -1.476 C22  JY0 14 
JY0 C24  C15 C 0 1 N N N N N N -14.229 -15.358 -15.231 -3.488 2.278  -0.596 C24  JY0 15 
JY0 C27  C16 C 0 1 N N N N N N -12.494 -10.773 -16.565 -4.220 -1.185 2.057  C27  JY0 16 
JY0 C3   C17 C 0 1 Y N N N N N -13.090 -19.331 -18.759 5.664  2.588  0.386  C3   JY0 17 
JY0 C34  C18 C 0 1 N N S N N N -8.324  -13.015 -18.605 -0.441 -1.747 -0.931 C34  JY0 18 
JY0 C4   C19 C 0 1 Y N N N N N -14.416 -19.119 -19.155 6.849  2.787  1.069  C4   JY0 19 
JY0 C5   C20 C 0 1 Y N N N N N -14.729 -18.036 -19.977 7.778  1.767  1.152  C5   JY0 20 
JY0 C6   C21 C 0 1 Y N N N N N -13.731 -17.162 -20.410 7.523  0.549  0.551  C6   JY0 21 
JY0 C7   C22 C 0 1 Y N N N N N -12.413 -17.374 -20.015 6.335  0.348  -0.127 C7   JY0 22 
JY0 C9   C23 C 0 1 N N N N N N -8.832  -12.403 -19.905 -1.820 -2.019 -1.536 C9   JY0 23 
JY0 N13  N1  N 0 1 N N N N N N -9.270  -15.242 -18.666 0.908  -0.075 0.237  N13  JY0 24 
JY0 N16  N2  N 0 1 N N N N N N -11.204 -12.819 -16.871 -2.746 -0.051 0.469  N16  JY0 25 
JY0 N23  N3  N 0 1 N N N N N N -15.174 -16.113 -15.799 -4.123 2.617  -1.731 N23  JY0 26 
JY0 O10  O1  O 0 1 N N N N N N -7.118  -13.731 -18.916 -0.167 -2.714 0.084  O10  JY0 27 
JY0 O11  O2  O 0 1 N N N N N N -9.899  -17.496 -19.124 3.109  0.646  -0.046 O11  JY0 28 
JY0 O26  O3  O 0 1 N N N N N N -13.936 -15.372 -14.051 -2.322 1.952  -0.523 O26  JY0 29 
JY0 O28  O4  O 0 1 N N N N N N -13.794 -10.184 -16.715 -4.933 -1.864 1.022  O28  JY0 30 
JY0 O33  O5  O 0 1 N N N N N N -10.593 -16.403 -17.232 1.671  0.600  -1.736 O33  JY0 31 
JY0 O38  O6  O 0 1 N N N N N N -11.471 -13.464 -18.989 -1.115 -0.379 1.936  O38  JY0 32 
JY0 H1   H1  H 0 1 N N N N N N -10.232 -19.540 -19.303 3.778  2.099  -1.384 H1   JY0 33 
JY0 H11  H2  H 0 1 N N N N N N -10.593 -18.834 -17.692 4.276  0.433  -1.762 H11  JY0 34 
JY0 H132 H3  H 0 0 N N N N N N -4.403  -11.795 -18.323 2.493  -2.717 0.245  H132 JY0 35 
JY0 H13  H4  H 0 1 N N N N N N -5.039  -12.337 -19.913 2.751  -3.994 -0.969 H13  JY0 36 
JY0 H131 H5  H 0 0 N N N N N N -6.031  -11.266 -18.866 2.000  -2.451 -1.445 H131 JY0 37 
JY0 H14  H6  H 0 1 N N N N N N -9.062  -14.119 -16.921 -0.647 0.391  -1.090 H14  JY0 38 
JY0 H162 H7  H 0 0 N N N N N N -4.022  -14.187 -17.710 0.153  -3.723 -2.418 H162 JY0 39 
JY0 H161 H8  H 0 0 N N N N N N -5.386  -15.355 -17.759 0.734  -5.305 -1.844 H161 JY0 40 
JY0 H16  H9  H 0 1 N N N N N N -4.696  -14.715 -19.289 -0.895 -4.740 -1.401 H16  JY0 41 
JY0 H2   H10 H 0 1 N N N N N N -12.995 -12.394 -17.864 -3.261 0.722  2.349  H2   JY0 42 
JY0 H181 H11 H 0 0 N N N N N N -5.313  -12.693 -16.237 -0.160 -5.215 1.004  H181 JY0 43 
JY0 H18  H12 H 0 1 N N N N N N -6.973  -12.186 -16.698 1.489  -5.608 0.461  H18  JY0 44 
JY0 H182 H13 H 0 0 N N N N N N -6.647  -13.896 -16.256 1.232  -4.331 1.675  H182 JY0 45 
JY0 H191 H14 H 0 0 N N N N N N -13.085 -12.906 -14.848 -5.321 0.451  0.115  H191 JY0 46 
JY0 H19  H15 H 0 1 N N N N N N -14.494 -12.600 -15.919 -5.680 1.049  1.752  H19  JY0 47 
JY0 H20  H16 H 0 1 N N N N N N -12.495 -14.869 -16.375 -3.963 2.862  1.420  H20  JY0 48 
JY0 H211 H17 H 0 0 N N N N N N -14.975 -13.886 -17.718 -6.571 2.831  0.442  H211 JY0 49 
JY0 H21  H18 H 0 1 N N N N N N -13.640 -14.901 -18.360 -5.490 4.255  0.276  H21  JY0 50 
JY0 H22  H19 H 0 1 N N N N N N -16.163 -15.890 -17.642 -6.172 2.116  -1.763 H22  JY0 51 
JY0 H221 H20 H 0 0 N N N N N N -14.667 -16.884 -17.689 -5.810 3.848  -2.024 H221 JY0 52 
JY0 H271 H21 H 0 0 N N N N N N -12.141 -10.620 -15.534 -3.367 -1.788 2.368  H271 JY0 53 
JY0 H27  H22 H 0 1 N N N N N N -11.794 -10.295 -17.267 -4.882 -1.025 2.909  H27  JY0 54 
JY0 H3   H23 H 0 1 N N N N N N -12.840 -20.166 -18.121 4.938  3.385  0.321  H3   JY0 55 
JY0 H341 H24 H 0 0 N N N N N N -8.108  -12.205 -17.892 0.317  -1.814 -1.712 H341 JY0 56 
JY0 H4   H25 H 0 1 N N N N N N -15.194 -19.792 -18.825 7.049  3.739  1.538  H4   JY0 57 
JY0 H5   H26 H 0 1 N N N N N N -15.752 -17.873 -20.281 8.704  1.922  1.685  H5   JY0 58 
JY0 H6   H27 H 0 1 N N N N N N -13.980 -16.326 -21.048 8.249  -0.248 0.615  H6   JY0 59 
JY0 H7   H28 H 0 1 N N N N N N -11.637 -16.699 -20.344 6.133  -0.605 -0.593 H7   JY0 60 
JY0 H92  H29 H 0 1 N N N N N N -8.065  -11.732 -20.319 -2.070 -1.227 -2.242 H92  JY0 61 
JY0 H9   H30 H 0 1 N N N N N N -9.047  -13.204 -20.628 -1.807 -2.978 -2.055 H9   JY0 62 
JY0 H91  H31 H 0 1 N N N N N N -9.751  -11.832 -19.707 -2.566 -2.046 -0.741 H91  JY0 63 
JY0 HN13 H32 H 0 0 N N N N N N -8.687  -15.311 -19.476 1.082  -0.237 1.178  HN13 JY0 64 
JY0 HN16 H33 H 0 0 N N N N N N -10.626 -12.766 -16.056 -3.029 -0.045 -0.459 HN16 JY0 65 
JY0 HN23 H34 H 0 0 N N N N N N -15.820 -16.683 -15.291 -3.705 2.639  -2.606 HN23 JY0 66 
JY0 HO28 H35 H 0 0 N N N N N N -13.744 -9.253  -16.530 -5.275 -2.730 1.283  HO28 JY0 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JY0 O33 C12  DOUB N N 1  
JY0 O11 C12  SING N N 2  
JY0 C12 N13  SING N N 3  
JY0 C1  O11  SING N N 4  
JY0 C2  C1   SING N N 5  
JY0 C2  C7   DOUB Y N 6  
JY0 C3  C2   SING Y N 7  
JY0 C7  C6   SING Y N 8  
JY0 C6  C5   DOUB Y N 9  
JY0 C5  C4   SING Y N 10 
JY0 C4  C3   DOUB Y N 11 
JY0 N13 C14  SING N N 12 
JY0 C34 C14  SING N N 13 
JY0 C14 C15  SING N N 14 
JY0 C9  C34  SING N N 15 
JY0 O10 C34  SING N N 16 
JY0 O38 C15  DOUB N N 17 
JY0 C15 N16  SING N N 18 
JY0 N16 C17  SING N N 19 
JY0 C27 C17  SING N N 20 
JY0 C17 C19  SING N N 21 
JY0 O28 C27  SING N N 22 
JY0 C19 C20  SING N N 23 
JY0 C20 C24  SING N N 24 
JY0 C20 C21  SING N N 25 
JY0 C24 O26  DOUB N N 26 
JY0 N23 C24  SING N N 27 
JY0 C21 C22  SING N N 28 
JY0 C22 N23  SING N N 29 
JY0 C11 O10  SING N N 30 
JY0 C13 C11  SING N N 31 
JY0 C16 C11  SING N N 32 
JY0 C18 C11  SING N N 33 
JY0 C1  H1   SING N N 34 
JY0 C1  H11  SING N N 35 
JY0 C13 H132 SING N N 36 
JY0 C13 H13  SING N N 37 
JY0 C13 H131 SING N N 38 
JY0 C14 H14  SING N N 39 
JY0 C16 H162 SING N N 40 
JY0 C16 H161 SING N N 41 
JY0 C16 H16  SING N N 42 
JY0 C17 H2   SING N N 43 
JY0 C18 H181 SING N N 44 
JY0 C18 H18  SING N N 45 
JY0 C18 H182 SING N N 46 
JY0 C19 H191 SING N N 47 
JY0 C19 H19  SING N N 48 
JY0 C20 H20  SING N N 49 
JY0 C21 H211 SING N N 50 
JY0 C21 H21  SING N N 51 
JY0 C22 H22  SING N N 52 
JY0 C22 H221 SING N N 53 
JY0 C27 H271 SING N N 54 
JY0 C27 H27  SING N N 55 
JY0 C3  H3   SING N N 56 
JY0 C34 H341 SING N N 57 
JY0 C4  H4   SING N N 58 
JY0 C5  H5   SING N N 59 
JY0 C6  H6   SING N N 60 
JY0 C7  H7   SING N N 61 
JY0 C9  H92  SING N N 62 
JY0 C9  H9   SING N N 63 
JY0 C9  H91  SING N N 64 
JY0 N13 HN13 SING N N 65 
JY0 N16 HN16 SING N N 66 
JY0 N23 HN23 SING N N 67 
JY0 O28 HO28 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JY0 SMILES           ACDLabs              12.01 "CC(C)(C)OC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC1CCNC1=O)CO"                                                                                                                                                
JY0 InChI            InChI                1.06  "InChI=1S/C23H35N3O6/c1-15(32-23(2,3)4)19(26-22(30)31-14-16-8-6-5-7-9-16)21(29)25-18(13-27)12-17-10-11-24-20(17)28/h5-9,15,17-19,27H,10-14H2,1-4H3,(H,24,28)(H,25,29)(H,26,30)/t15-,17-,18-,19-/m0/s1" 
JY0 InChIKey         InChI                1.06  DCDIPOZOXMQJTA-WNHJNPCNSA-N                                                                                                                                                                            
JY0 SMILES_CANONICAL CACTVS               3.385 "C[C@H](OC(C)(C)C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                               
JY0 SMILES           CACTVS               3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                                    
JY0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C"                                                                                                                            
JY0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C"                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JY0 "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl [(2S,3S)-3-tert-butoxy-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxobutan-2-yl]carbamate"                                                              
JY0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{S})-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JY0 "Create component" 2023-08-10 RCSB 
JY0 "Initial release"  2024-08-14 RCSB 
JY0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            JY0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
