data_J50
# 
_chem_comp.id                                    J50 
_chem_comp.name                                  "8-(2-chloroacetyl)-4-((5-phenylfuran-2-yl)methyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H21 Cl N2 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        404.910 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J50 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7EKV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J50 C17 C1  C  0 1 Y N N N N N -38.341 11.105 18.726 -4.498 1.183  0.022  C17 J50 1  
J50 C12 C2  C  0 1 Y N N N N N -39.790 12.336 15.522 -1.060 0.163  -0.512 C12 J50 2  
J50 C14 C3  C  0 1 Y N N N N N -38.997 11.320 17.344 -3.039 0.950  0.023  C14 J50 3  
J50 C15 C4  C  0 1 Y N N N N N -39.503 10.343 16.496 -2.136 1.545  0.847  C15 J50 4  
J50 C16 C5  C  0 1 Y N N N N N -39.988 10.968 15.373 -0.870 1.031  0.501  C16 J50 5  
J50 C19 C6  C  0 1 Y N N N N N -37.465 12.116 21.031 -6.428 2.293  0.923  C19 J50 6  
J50 C20 C7  C  0 1 Y N N N N N -37.034 10.709 21.478 -7.233 1.620  0.021  C20 J50 7  
J50 C21 C8  C  0 1 Y N N N N N -37.247 9.501  20.552 -6.678 0.726  -0.877 C21 J50 8  
J50 C22 C9  C  0 1 Y N N N N N -37.898 9.699  19.174 -5.317 0.503  -0.882 C22 J50 9  
J50 C23 C10 C  0 1 N N N N N N -41.179 19.365 16.387 4.037  1.184  -0.427 C23 J50 10 
J50 C24 C11 C  0 1 N N N N N N -41.416 19.573 17.900 3.990  2.440  0.405  C24 J50 11 
J50 C11 C12 C  0 1 N N N N N N -40.167 13.455 14.522 0.019  -0.629 -1.204 C11 J50 12 
J50 C18 C13 C  0 1 Y N N N N N -38.119 12.312 19.655 -5.065 2.080  0.929  C18 J50 13 
J50 C01 C14 C  0 1 N N N N N N -39.851 18.120 14.478 3.032  -0.905 -1.214 C01 J50 14 
J50 C03 C15 C  0 1 N N N N N N -39.405 17.544 16.883 1.816  0.598  0.419  C03 J50 15 
J50 C04 C16 C  0 1 N N N N N N -38.922 16.156 16.457 1.561  -0.611 1.328  C04 J50 16 
J50 C05 C17 C  0 1 N N N N N N -38.977 15.785 15.021 1.477  -1.873 0.479  C05 J50 17 
J50 C06 C18 C  0 1 N N N N N N -39.832 16.632 14.147 2.768  -2.103 -0.295 C06 J50 18 
J50 C08 C19 C  0 1 N N N N N N -36.650 15.298 13.833 -0.027 -4.094 0.356  C08 J50 19 
J50 C09 C20 C  0 1 N N N N N N -37.595 14.062 13.690 -0.441 -2.914 -0.502 C09 J50 20 
J50 N02 N1  N  0 1 N N N N N N -40.207 18.380 15.917 2.999  0.323  -0.408 N02 J50 21 
J50 N10 N2  N  0 1 N N N N N N -39.027 14.391 14.437 0.323  -1.829 -0.420 N10 J50 22 
J50 O13 O1  O  0 1 Y N N N N N -39.181 12.541 16.734 -2.371 0.116  -0.798 O13 J50 23 
J50 O25 O2  O  0 1 N N N N N N -41.781 20.018 15.609 5.008  0.947  -1.114 O25 J50 24 
J50 O26 O3  O  0 1 N N N N N N -37.372 13.027 13.152 -1.416 -2.958 -1.222 O26 J50 25 
J50 S07 S1  S  0 1 N N N N N N -37.346 16.361 14.928 1.133  -3.318 1.553  S07 J50 26 
J50 H1  H1  H  0 1 N N N N N N -39.513 9.280  16.686 -2.348 2.272  1.617  H1  J50 27 
J50 H2  H2  H  0 1 N N N N N N -40.443 10.482 14.523 0.073  1.285  0.961  H2  J50 28 
J50 H3  H3  H  0 1 N N N N N N -37.308 12.963 21.682 -6.868 2.990  1.621  H3  J50 29 
J50 H4  H4  H  0 1 N N N N N N -36.579 10.569 22.448 -8.299 1.791  0.020  H4  J50 30 
J50 H5  H5  H  0 1 N N N N N N -36.940 8.515  20.869 -7.312 0.203  -1.579 H5  J50 31 
J50 H6  H6  H  0 1 N N N N N N -38.045 8.852  18.520 -4.885 -0.195 -1.583 H6  J50 32 
J50 H7  H7  H  0 1 N N N N N N -42.473 19.382 18.136 3.138  3.047  0.098  H7  J50 33 
J50 H8  H8  H  0 1 N N N N N N -40.781 18.879 18.471 3.887  2.175  1.457  H8  J50 34 
J50 CL1 CL1 CL 0 0 N N N N N N -41.168 20.581 18.160 5.512  3.376  0.167  CL1 J50 35 
J50 H10 H10 H  0 1 N N N N N N -40.368 13.020 13.532 -0.324 -0.921 -2.196 H10 J50 36 
J50 H11 H11 H  0 1 N N N N N N -41.062 13.987 14.877 0.917  -0.018 -1.295 H11 J50 37 
J50 H12 H12 H  0 1 N N N N N N -38.424 13.299 19.339 -4.438 2.606  1.634  H12 J50 38 
J50 H13 H13 H  0 1 N N N N N N -38.854 18.540 14.279 4.012  -1.010 -1.680 H13 J50 39 
J50 H14 H14 H  0 1 N N N N N N -40.593 18.616 13.835 2.262  -0.858 -1.983 H14 J50 40 
J50 H15 H15 H  0 1 N N N N N N -40.027 17.405 17.779 0.951  0.762  -0.223 H15 J50 41 
J50 H16 H16 H  0 1 N N N N N N -38.510 18.128 17.145 1.994  1.483  1.030  H16 J50 42 
J50 H17 H17 H  0 1 N N N N N N -37.872 16.069 16.772 2.377  -0.707 2.043  H17 J50 43 
J50 H18 H18 H  0 1 N N N N N N -40.864 16.257 14.219 2.676  -3.008 -0.895 H18 J50 44 
J50 H19 H19 H  0 1 N N N N N N -39.473 16.521 13.113 3.597  -2.214 0.405  H19 J50 45 
J50 H20 H20 H  0 1 N N N N N N -35.666 14.974 14.202 -0.888 -4.520 0.871  H20 J50 46 
J50 H21 H21 H  0 1 N N N N N N -36.532 15.792 12.857 0.481  -4.850 -0.243 H21 J50 47 
J50 H22 H22 H  0 1 N N N N N N -39.531 15.421 17.004 0.622  -0.470 1.864  H22 J50 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J50 C17 C14 SING N N 1  
J50 C17 C22 DOUB Y N 2  
J50 C17 C18 SING Y N 3  
J50 C12 C16 DOUB Y N 4  
J50 C12 C11 SING N N 5  
J50 C12 O13 SING Y N 6  
J50 C14 C15 DOUB Y N 7  
J50 C14 O13 SING Y N 8  
J50 C15 C16 SING Y N 9  
J50 C19 C20 SING Y N 10 
J50 C19 C18 DOUB Y N 11 
J50 C20 C21 DOUB Y N 12 
J50 C21 C22 SING Y N 13 
J50 C23 C24 SING N N 14 
J50 C23 N02 SING N N 15 
J50 C23 O25 DOUB N N 16 
J50 C11 N10 SING N N 17 
J50 C01 C06 SING N N 18 
J50 C01 N02 SING N N 19 
J50 C03 C04 SING N N 20 
J50 C03 N02 SING N N 21 
J50 C04 C05 SING N N 22 
J50 C05 C06 SING N N 23 
J50 C05 N10 SING N N 24 
J50 C05 S07 SING N N 25 
J50 C08 C09 SING N N 26 
J50 C08 S07 SING N N 27 
J50 C09 N10 SING N N 28 
J50 C09 O26 DOUB N N 29 
J50 C15 H1  SING N N 30 
J50 C16 H2  SING N N 31 
J50 C19 H3  SING N N 32 
J50 C20 H4  SING N N 33 
J50 C21 H5  SING N N 34 
J50 C22 H6  SING N N 35 
J50 C24 H7  SING N N 36 
J50 C24 H8  SING N N 37 
J50 C24 CL1 SING N N 38 
J50 C11 H10 SING N N 39 
J50 C11 H11 SING N N 40 
J50 C18 H12 SING N N 41 
J50 C01 H13 SING N N 42 
J50 C01 H14 SING N N 43 
J50 C03 H15 SING N N 44 
J50 C03 H16 SING N N 45 
J50 C04 H17 SING N N 46 
J50 C06 H18 SING N N 47 
J50 C06 H19 SING N N 48 
J50 C08 H20 SING N N 49 
J50 C08 H21 SING N N 50 
J50 C04 H22 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J50 InChI            InChI                1.03  "InChI=1S/C20H21ClN2O3S/c21-12-18(24)22-10-8-20(9-11-22)23(19(25)14-27-20)13-16-6-7-17(26-16)15-4-2-1-3-5-15/h1-7H,8-14H2" 
J50 InChIKey         InChI                1.03  VQODBXUPRRJDAB-UHFFFAOYSA-N                                                                                                
J50 SMILES_CANONICAL CACTVS               3.385 "ClCC(=O)N1CCC2(CC1)SCC(=O)N2Cc3oc(cc3)c4ccccc4"                                                                           
J50 SMILES           CACTVS               3.385 "ClCC(=O)N1CCC2(CC1)SCC(=O)N2Cc3oc(cc3)c4ccccc4"                                                                           
J50 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(o2)CN3C(=O)CSC34CCN(CC4)C(=O)CCl"                                                                         
J50 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(o2)CN3C(=O)CSC34CCN(CC4)C(=O)CCl"                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           J50 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-(2-chloranylethanoyl)-4-[(5-phenylfuran-2-yl)methyl]-1-thia-4,8-diazaspiro[4.5]decan-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J50 "Create component" 2021-04-09 PDBJ 
J50 "Initial release"  2022-02-16 RCSB 
J50 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J50 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C24 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
