data_J30
# 
_chem_comp.id                                    J30 
_chem_comp.name                                  "4-[4-(naphthalen-1-ylmethyl)piperazin-1-yl]-4-oxobutane-1-thiol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H24 N2 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-09-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        328.472 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J30 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3OTU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J30 SD   SD   S 0 1 N N N N N N -6.745 -13.640 -10.901 7.800  1.011  -0.460 SD   J30 1  
J30 CE   CE   C 0 1 N N N N N N -5.331 -14.346 -10.118 6.017  1.308  -0.607 CE   J30 2  
J30 CH   CH   C 0 1 N N N N N N -3.687 -13.765 -11.975 3.752  0.279  -0.373 CH   J30 3  
J30 CZ   CZ   C 0 1 N N N N N N -4.079 -13.570 -10.511 5.256  0.029  -0.250 CZ   J30 4  
J30 C12  C12  C 0 1 N N N N N N -2.333 -13.121 -12.182 3.002  -0.980 -0.022 C12  J30 5  
J30 O13  O13  O 0 1 N N N N N N -1.810 -12.486 -11.278 3.612  -1.980 0.296  O13  J30 6  
J30 N14  N14  N 0 1 N N N N N N -1.741 -13.267 -13.363 1.655  -0.996 -0.061 N14  J30 7  
J30 C15  C15  C 0 1 N N N N N N -0.432 -12.664 -13.587 0.905  -2.214 0.278  C15  J30 8  
J30 C16  C16  C 0 1 N N N N N N -0.385 -12.200 -15.037 -0.162 -1.855 1.319  C16  J30 9  
J30 C17  C17  C 0 1 N N N N N N 0.260  -13.427 -17.109 -2.118 -0.481 1.704  C17  J30 10 
J30 N17  N17  N 0 1 N N N N N N -0.454 -13.407 -15.838 -0.978 -0.743 0.814  N17  J30 11 
J30 C18  C18  C 0 1 N N N N N N -1.241 -14.550 -15.380 -0.169 0.468  0.625  C18  J30 12 
J30 C19  C19  C 0 1 N N N N N N -2.344 -14.019 -14.462 0.897  0.206  -0.438 C19  J30 13 
J30 C40  C40  C 0 1 Y N N N N N -0.409 -14.364 -18.085 -3.061 0.488  1.039  C40  J30 14 
J30 C41  C41  C 0 1 Y N N N N N 0.009  -15.681 -18.154 -3.970 0.036  0.067  C41  J30 15 
J30 C42  C42  C 0 1 Y N N N N N -0.600 -16.555 -19.044 -4.850 0.963  -0.546 C42  J30 16 
J30 C43  C43  C 0 1 Y N N N N N -1.626 -16.103 -19.869 -4.795 2.316  -0.171 C43  J30 17 
J30 C44  C44  C 0 1 Y N N N N N -2.040 -14.777 -19.802 -3.902 2.718  0.774  C44  J30 18 
J30 C45  C45  C 0 1 Y N N N N N -1.430 -13.908 -18.907 -3.041 1.806  1.381  C45  J30 19 
J30 C46  C46  C 0 1 Y N N N N N 1.038  -16.121 -17.324 -4.025 -1.317 -0.308 C46  J30 20 
J30 C47  C47  C 0 1 Y N N N N N 1.459  -17.444 -17.386 -4.919 -1.719 -1.252 C47  J30 21 
J30 C48  C48  C 0 1 Y N N N N N 0.849  -18.322 -18.276 -5.783 -0.807 -1.856 C48  J30 22 
J30 C49  C49  C 0 1 Y N N N N N -0.179 -17.880 -19.105 -5.759 0.511  -1.518 C49  J30 23 
J30 HSD  HSD  H 0 1 N N N N N N -7.703 -14.404 -10.468 8.333  2.199  -0.797 HSD  J30 24 
J30 HE   HE   H 0 1 N N N N N N -5.459 -14.302 -9.026  5.724  2.106  0.075  HE   J30 25 
J30 HEA  HEA  H 0 1 N N N N N N -5.224 -15.394 -10.435 5.780  1.598  -1.630 HEA  J30 26 
J30 HH   HH   H 0 1 N N N N N N -4.433 -13.292 -12.631 3.459  1.078  0.308  HH   J30 27 
J30 HHA  HHA  H 0 1 N N N N N N -3.634 -14.838 -12.211 3.514  0.569  -1.397 HHA  J30 28 
J30 HZ   HZ   H 0 1 N N N N N N -4.270 -12.500 -10.345 5.549  -0.770 -0.931 HZ   J30 29 
J30 HZA  HZA  H 0 1 N N N N N N -3.246 -13.917 -9.882  5.493  -0.261 0.774  HZA  J30 30 
J30 H15  H15  H 0 1 N N N N N N -0.288 -11.809 -12.911 0.424  -2.610 -0.617 H15  J30 31 
J30 H15A H15A H 0 0 N N N N N N 0.362  -13.402 -13.399 1.584  -2.961 0.689  H15A J30 32 
J30 H16  H16  H 0 1 N N N N N N -1.232 -11.535 -15.261 -0.799 -2.721 1.500  H16  J30 33 
J30 H16A H16A H 0 0 N N N N N N 0.546  -11.650 -15.240 0.323  -1.559 2.249  H16A J30 34 
J30 H17  H17  H 0 1 N N N N N N 1.292  -13.767 -16.935 -2.641 -1.415 1.908  H17  J30 35 
J30 H17A H17A H 0 0 N N N N N N 0.266  -12.412 -17.533 -1.758 -0.054 2.639  H17A J30 36 
J30 H18  H18  H 0 1 N N N N N N -1.685 -15.071 -16.241 -0.812 1.288  0.303  H18  J30 37 
J30 H18A H18A H 0 0 N N N N N N -0.599 -15.254 -14.830 0.316  0.733  1.565  H18A J30 38 
J30 H19  H19  H 0 1 N N N N N N -2.922 -14.863 -14.056 1.570  1.061  -0.500 H19  J30 39 
J30 H19A H19A H 0 0 N N N N N N -3.012 -13.359 -15.035 0.419  0.043  -1.404 H19A J30 40 
J30 H43  H43  H 0 1 N N N N N N -2.101 -16.782 -20.561 -5.459 3.034  -0.630 H43  J30 41 
J30 H44  H44  H 0 1 N N N N N N -2.834 -14.424 -20.444 -3.862 3.759  1.060  H44  J30 42 
J30 H45  H45  H 0 1 N N N N N N -1.750 -12.878 -18.851 -2.341 2.151  2.128  H45  J30 43 
J30 H46  H46  H 0 1 N N N N N N 1.507  -15.435 -16.634 -3.360 -2.034 0.151  H46  J30 44 
J30 H47  H47  H 0 1 N N N N N N 2.257  -17.789 -16.745 -4.958 -2.759 -1.538 H47  J30 45 
J30 H48  H48  H 0 1 N N N N N N 1.174  -19.351 -18.324 -6.482 -1.152 -2.603 H48  J30 46 
J30 H49  H49  H 0 1 N N N N N N -0.649 -18.565 -19.795 -6.435 1.206  -1.994 H49  J30 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J30 SD  CE   SING N N 1  
J30 SD  HSD  SING N N 2  
J30 CZ  CE   SING N N 3  
J30 CE  HE   SING N N 4  
J30 CE  HEA  SING N N 5  
J30 C12 CH   SING N N 6  
J30 CH  CZ   SING N N 7  
J30 CH  HH   SING N N 8  
J30 CH  HHA  SING N N 9  
J30 CZ  HZ   SING N N 10 
J30 CZ  HZA  SING N N 11 
J30 N14 C12  SING N N 12 
J30 C12 O13  DOUB N N 13 
J30 C19 N14  SING N N 14 
J30 C15 N14  SING N N 15 
J30 C16 C15  SING N N 16 
J30 C15 H15  SING N N 17 
J30 C15 H15A SING N N 18 
J30 N17 C16  SING N N 19 
J30 C16 H16  SING N N 20 
J30 C16 H16A SING N N 21 
J30 C40 C17  SING N N 22 
J30 C17 N17  SING N N 23 
J30 C17 H17  SING N N 24 
J30 C17 H17A SING N N 25 
J30 N17 C18  SING N N 26 
J30 C18 C19  SING N N 27 
J30 C18 H18  SING N N 28 
J30 C18 H18A SING N N 29 
J30 C19 H19  SING N N 30 
J30 C19 H19A SING N N 31 
J30 C45 C40  DOUB Y N 32 
J30 C41 C40  SING Y N 33 
J30 C42 C41  SING Y N 34 
J30 C41 C46  DOUB Y N 35 
J30 C43 C42  SING Y N 36 
J30 C49 C42  DOUB Y N 37 
J30 C43 C44  DOUB Y N 38 
J30 C43 H43  SING N N 39 
J30 C44 C45  SING Y N 40 
J30 C44 H44  SING N N 41 
J30 C45 H45  SING N N 42 
J30 C47 C46  SING Y N 43 
J30 C46 H46  SING N N 44 
J30 C48 C47  DOUB Y N 45 
J30 C47 H47  SING N N 46 
J30 C49 C48  SING Y N 47 
J30 C48 H48  SING N N 48 
J30 C49 H49  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J30 SMILES           ACDLabs              12.01 "O=C(N3CCN(Cc1cccc2c1cccc2)CC3)CCCS"                                                                              
J30 SMILES_CANONICAL CACTVS               3.370 "SCCCC(=O)N1CCN(CC1)Cc2cccc3ccccc23"                                                                              
J30 SMILES           CACTVS               3.370 "SCCCC(=O)N1CCN(CC1)Cc2cccc3ccccc23"                                                                              
J30 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc2c(c1)cccc2CN3CCN(CC3)C(=O)CCCS"                                                                            
J30 SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc2c(c1)cccc2CN3CCN(CC3)C(=O)CCCS"                                                                            
J30 InChI            InChI                1.03  "InChI=1S/C19H24N2OS/c22-19(9-4-14-23)21-12-10-20(11-13-21)15-17-7-3-6-16-5-1-2-8-18(16)17/h1-3,5-8,23H,4,9-15H2" 
J30 InChIKey         InChI                1.03  KGVPRVVVECAVEV-UHFFFAOYSA-N                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J30 "SYSTEMATIC NAME" ACDLabs              12.01 "1-[4-(naphthalen-1-ylmethyl)piperazin-1-yl]-4-sulfanylbutan-1-one"  
J30 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "1-[4-(naphthalen-1-ylmethyl)piperazin-1-yl]-4-sulfanyl-butan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J30 "Create component"     2010-09-14 RCSB 
J30 "Modify aromatic_flag" 2011-06-04 RCSB 
J30 "Modify descriptor"    2011-06-04 RCSB 
J30 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J30 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               SD 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
