data_HN0
# 
_chem_comp.id                                    HN0 
_chem_comp.name                                  
;2'-deoxy-N-[(2S,3S,5R)-5-hydroxy-2-pentyltetrahydrofuran-3-yl]guanosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C19 H30 N5 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-08-15 
_chem_comp.pdbx_modified_date                    2012-02-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.443 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HN0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3T5K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HN0 OP3    OP3    O 0 1 N Y N 5.992  -37.662 13.343 -7.930 0.771  -0.145 OP3    HN0 1  
HN0 C      C      C 0 1 N N N 16.720 -38.918 13.479 2.947  -1.370 -2.129 C      HN0 2  
HN0 P      P      P 0 1 N N N 5.957  -37.849 14.940 -7.571 -0.792 -0.287 P      HN0 3  
HN0 C1     C1     C 0 1 N N R 18.095 -39.217 14.046 4.279  -1.813 -2.765 C1     HN0 4  
HN0 N1     N1     N 0 1 N N N 15.151 -34.610 12.522 2.486  2.812  -0.687 N1     HN0 5  
HN0 O1     O1     O 0 1 N N N 18.476 -40.566 13.954 4.272  -3.227 -2.971 O1     HN0 6  
HN0 C2     C2     C 0 1 N N N 15.012 -35.698 13.392 2.360  1.457  -0.622 C2     HN0 7  
HN0 N2     N2     N 0 1 N N N 16.096 -36.504 13.521 3.470  0.674  -0.821 N2     HN0 8  
HN0 C3     C3     C 0 1 N N S 16.257 -37.741 14.357 3.359  -0.785 -0.756 C3     HN0 9  
HN0 N3     N3     N 0 1 N N N 13.847 -35.924 14.069 1.207  0.877  -0.375 N3     HN0 10 
HN0 C4     C4     C 0 1 Y N N 12.819 -34.987 13.816 0.098  1.599  -0.175 C4     HN0 11 
HN0 O4     O4     O 0 1 N N N 18.057 -38.975 15.405 5.329  -1.458 -1.849 O4     HN0 12 
HN0 C5     C5     C 0 1 Y N N 12.872 -33.874 12.966 0.162  2.996  -0.229 C5     HN0 13 
HN0 C6     C6     C 0 1 N N N 14.131 -33.650 12.247 1.411  3.607  -0.490 C6     HN0 14 
HN0 O6     O6     O 0 1 N N N 14.402 -32.735 11.456 1.513  4.821  -0.546 O6     HN0 15 
HN0 C7     C7     C 0 1 N N S 17.325 -37.761 15.566 4.747  -1.436 -0.528 C7     HN0 16 
HN0 N7     N7     N 0 1 Y N N 11.641 -33.174 12.980 -1.087 3.466  0.006  N7     HN0 17 
HN0 C8     C8     C 0 1 Y N N 10.911 -33.868 13.832 -1.895 2.464  0.197  C8     HN0 18 
HN0 C9     C9     C 0 1 N N N 18.430 -36.638 15.683 5.593  -0.583 0.419  C9     HN0 19 
HN0 N9     N9     N 0 1 Y N N 11.551 -34.975 14.383 -1.207 1.289  0.094  N9     HN0 20 
HN0 "C1'"  "C1'"  C 0 1 N N R 11.077 -35.937 15.354 -1.765 -0.057 0.245  "C1'"  HN0 21 
HN0 C10    C10    C 0 1 N N N 19.573 -36.837 16.726 6.905  -1.309 0.724  C10    HN0 22 
HN0 C11    C11    C 0 1 N N N 20.585 -35.653 16.710 7.752  -0.456 1.671  C11    HN0 23 
HN0 C12    C12    C 0 1 N N N 21.748 -35.788 17.731 9.064  -1.182 1.975  C12    HN0 24 
HN0 C13    C13    C 0 1 N N N 23.132 -36.004 17.098 9.910  -0.329 2.923  C13    HN0 25 
HN0 "C2'"  "C2'"  C 0 1 N N N 9.861  -35.548 16.151 -1.568 -0.547 1.693  "C2'"  HN0 26 
HN0 "C3'"  "C3'"  C 0 1 N N S 9.661  -36.898 16.806 -3.003 -0.838 2.193  "C3'"  HN0 27 
HN0 "O3'"  "O3'"  O 0 1 N N N 10.721 -37.025 17.758 -3.040 -2.040 2.966  "O3'"  HN0 28 
HN0 "C4'"  "C4'"  C 0 1 N N R 9.836  -37.848 15.621 -3.782 -1.011 0.864  "C4'"  HN0 29 
HN0 "O4'"  "O4'"  O 0 1 N N N 10.702 -37.134 14.699 -3.179 -0.032 -0.009 "O4'"  HN0 30 
HN0 "C5'"  "C5'"  C 0 1 N N N 8.548  -38.221 14.926 -5.269 -0.714 1.068  "C5'"  HN0 31 
HN0 "O5'"  "O5'"  O 0 1 N N N 7.434  -37.419 15.375 -5.980 -0.993 -0.140 "O5'"  HN0 32 
HN0 OP1    OP1    O 0 1 N N N 5.785  -39.299 15.236 -8.264 -1.556 0.775  OP1    HN0 33 
HN0 OP2    OP2    O 0 1 N N N 4.990  -36.869 15.505 -8.048 -1.324 -1.729 OP2    HN0 34 
HN0 H      H      H 0 1 N N N 16.780 -38.627 12.420 2.468  -0.605 -2.741 H      HN0 35 
HN0 HA     HA     H 0 1 N N N 16.048 -39.783 13.584 2.284  -2.225 -1.996 HA     HN0 36 
HN0 H1     H1     H 0 1 N N N 18.835 -38.571 13.551 4.426  -1.299 -3.714 H1     HN0 37 
HN0 HN1    HN1    H 0 1 N N N 16.030 -34.497 12.059 3.352  3.208  -0.872 HN1    HN0 38 
HN0 HO1    HO1    H 0 1 N N N 19.343 -40.677 14.327 5.083  -3.571 -3.369 HO1    HN0 39 
HN0 HN2    HN2    H 0 1 N N N 16.898 -36.238 12.986 4.328  1.087  -1.004 HN2    HN0 40 
HN0 H3     H3     H 0 1 N N N 15.278 -38.002 14.785 2.656  -1.086 0.022  H3     HN0 41 
HN0 H7     H7     H 0 1 N N N 16.760 -37.783 16.510 4.637  -2.449 -0.140 H7     HN0 42 
HN0 H8     H8     H 0 1 N N N 9.896  -33.598 14.083 -2.951 2.548  0.405  H8     HN0 43 
HN0 H9     H9     H 0 1 N N N 18.903 -36.541 14.695 5.809  0.376  -0.051 H9     HN0 44 
HN0 H9A    H9A    H 0 1 N N N 17.916 -35.699 15.937 5.045  -0.419 1.347  H9A    HN0 45 
HN0 "H1'"  "H1'"  H 0 1 N N N 11.891 -36.153 16.062 -1.274 -0.741 -0.447 "H1'"  HN0 46 
HN0 H10    H10    H 0 1 N N N 19.130 -36.913 17.730 6.690  -2.269 1.193  H10    HN0 47 
HN0 H10A   H10A   H 0 0 N N N 20.110 -37.768 16.492 7.453  -1.474 -0.204 H10A   HN0 48 
HN0 H11    H11    H 0 1 N N N 21.019 -35.585 15.701 7.968  0.503  1.201  H11    HN0 49 
HN0 H11A   H11A   H 0 0 N N N 20.035 -34.727 16.936 7.204  -0.292 2.599  H11A   HN0 50 
HN0 H12    H12    H 0 1 N N N 21.785 -34.868 18.332 8.848  -2.141 2.445  H12    HN0 51 
HN0 H12A   H12A   H 0 0 N N N 21.532 -36.645 18.386 9.612  -1.346 1.048  H12A   HN0 52 
HN0 H13    H13    H 0 1 N N N 23.889 -36.088 17.891 10.126 0.631  2.453  H13    HN0 53 
HN0 H13A   H13A   H 0 0 N N N 23.122 -36.928 16.501 9.363  -0.164 3.851  H13A   HN0 54 
HN0 H13B   H13B   H 0 0 N N N 23.375 -35.150 16.448 10.845 -0.846 3.140  H13B   HN0 55 
HN0 "H2'"  "H2'"  H 0 1 N N N 10.068 -34.749 16.879 -0.966 -1.456 1.710  "H2'"  HN0 56 
HN0 "H2'A" "H2'A" H 0 0 N N N 9.013  -35.254 15.515 -1.103 0.231  2.299  "H2'A" HN0 57 
HN0 "H3'"  "H3'"  H 0 1 N Y N 8.661  -36.991 17.256 -3.394 0.002  2.767  "H3'"  HN0 58 
HN0 "HO3'" "HO3'" H 0 0 N N N 10.648 -37.860 18.205 -2.494 -2.012 3.763  "HO3'" HN0 59 
HN0 "H4'"  "H4'"  H 0 1 N N N 10.335 -38.764 15.970 -3.644 -2.017 0.467  "H4'"  HN0 60 
HN0 "H5'"  "H5'"  H 0 1 N N N 8.675  -38.076 13.843 -5.657 -1.340 1.871  "H5'"  HN0 61 
HN0 "H5'A" "H5'A" H 0 0 N N N 8.328  -39.279 15.131 -5.397 0.336  1.331  "H5'A" HN0 62 
HN0 HOP3   HOP3   H 0 0 N Y N 5.896  -38.508 12.922 -7.509 1.333  -0.809 HOP3   HN0 63 
HN0 HOP2   HOP2   H 0 0 N N N 4.338  -37.328 16.021 -8.997 -1.234 -1.888 HOP2   HN0 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HN0 OP3   P      SING N N 1  
HN0 C     C1     SING N N 2  
HN0 C     C3     SING N N 3  
HN0 C     H      SING N N 4  
HN0 C     HA     SING N N 5  
HN0 P     OP1    DOUB N N 6  
HN0 P     "O5'"  SING N N 7  
HN0 P     OP2    SING N N 8  
HN0 O1    C1     SING N N 9  
HN0 C1    O4     SING N N 10 
HN0 C1    H1     SING N N 11 
HN0 C6    N1     SING N N 12 
HN0 N1    C2     SING N N 13 
HN0 N1    HN1    SING N N 14 
HN0 O1    HO1    SING N N 15 
HN0 C2    N2     SING N N 16 
HN0 C2    N3     DOUB N N 17 
HN0 N2    C3     SING N N 18 
HN0 N2    HN2    SING N N 19 
HN0 C3    C7     SING N N 20 
HN0 C3    H3     SING N N 21 
HN0 C4    N3     SING N N 22 
HN0 C5    C4     DOUB Y N 23 
HN0 C4    N9     SING Y N 24 
HN0 O4    C7     SING N N 25 
HN0 C6    C5     SING N N 26 
HN0 C5    N7     SING Y N 27 
HN0 O6    C6     DOUB N N 28 
HN0 C7    C9     SING N N 29 
HN0 C7    H7     SING N N 30 
HN0 N7    C8     DOUB Y N 31 
HN0 C8    N9     SING Y N 32 
HN0 C8    H8     SING N N 33 
HN0 C9    C10    SING N N 34 
HN0 C9    H9     SING N N 35 
HN0 C9    H9A    SING N N 36 
HN0 N9    "C1'"  SING N N 37 
HN0 "O4'" "C1'"  SING N N 38 
HN0 "C1'" "C2'"  SING N N 39 
HN0 "C1'" "H1'"  SING N N 40 
HN0 C11   C10    SING N N 41 
HN0 C10   H10    SING N N 42 
HN0 C10   H10A   SING N N 43 
HN0 C11   C12    SING N N 44 
HN0 C11   H11    SING N N 45 
HN0 C11   H11A   SING N N 46 
HN0 C13   C12    SING N N 47 
HN0 C12   H12    SING N N 48 
HN0 C12   H12A   SING N N 49 
HN0 C13   H13    SING N N 50 
HN0 C13   H13A   SING N N 51 
HN0 C13   H13B   SING N N 52 
HN0 "C2'" "C3'"  SING N N 53 
HN0 "C2'" "H2'"  SING N N 54 
HN0 "C2'" "H2'A" SING N N 55 
HN0 "C4'" "C3'"  SING N N 56 
HN0 "C3'" "O3'"  SING N N 57 
HN0 "C3'" "H3'"  SING N N 58 
HN0 "O3'" "HO3'" SING N N 59 
HN0 "O4'" "C4'"  SING N N 60 
HN0 "C5'" "C4'"  SING N N 61 
HN0 "C4'" "H4'"  SING N N 62 
HN0 "C5'" "O5'"  SING N N 63 
HN0 "C5'" "H5'"  SING N N 64 
HN0 "C5'" "H5'A" SING N N 65 
HN0 OP3   HOP3   SING N N 66 
HN0 OP2   HOP2   SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HN0 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n1c2N=C(NC(=O)c2nc1)NC3C(OC(O)C3)CCCCC)CC4O" 
HN0 InChI            InChI                1.03  
"InChI=1S/C19H30N5O9P/c1-2-3-4-5-12-10(6-15(26)33-12)21-19-22-17-16(18(27)23-19)20-9-24(17)14-7-11(25)13(32-14)8-31-34(28,29)30/h9-15,25-26H,2-8H2,1H3,(H2,28,29,30)(H2,21,22,23,27)/t10-,11-,12-,13+,14+,15+/m0/s1" 
HN0 InChIKey         InChI                1.03  ITRPVFNWIAAYPZ-PKCACUDHSA-N 
HN0 SMILES_CANONICAL CACTVS               3.370 "CCCCC[C@@H]1O[C@@H](O)C[C@@H]1NC2=Nc3n(cnc3C(=O)N2)[C@H]4C[C@H](O)[C@@H](CO[P](O)(O)=O)O4" 
HN0 SMILES           CACTVS               3.370 "CCCCC[CH]1O[CH](O)C[CH]1NC2=Nc3n(cnc3C(=O)N2)[CH]4C[CH](O)[CH](CO[P](O)(O)=O)O4" 
HN0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCC[C@H]1[C@H](C[C@@H](O1)O)NC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2" 
HN0 SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCCC1C(CC(O1)O)NC2=Nc3c(ncn3C4CC(C(O4)COP(=O)(O)O)O)C(=O)N2" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HN0 "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-N-[(2S,3S,5R)-5-hydroxy-2-pentyltetrahydrofuran-3-yl]guanosine 5'-(dihydrogen phosphate)
;
HN0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-3-oxidanyl-5-[6-oxidanylidene-2-[[(2S,3S,5R)-5-oxidanyl-2-pentyl-oxolan-3-yl]amino]-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HN0 "Create component"   2011-08-15 RCSB 
HN0 "Other modification" 2011-09-08 RCSB 
# 
