data_HE0
# 
_chem_comp.id                                    HE0 
_chem_comp.name                                  "(2R,4S)-2-[(1R)-1-{[(6S)-6-carboxy-6-(glycylamino)hexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H28 N4 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Penicillin analog, bound/open form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        432.492 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HE0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1PWG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HE0 S1   S1   S 0 1 N N N N N N 18.281 -12.643 41.419 -4.279 -1.398 0.290  S1   HE0 1  
HE0 C2   C2   C 0 1 N N N N N N 18.939 -10.945 41.664 -6.075 -1.292 -0.078 C2   HE0 2  
HE0 C3   C3   C 0 1 N N S N N N 18.215 -9.962  40.700 -6.379 0.213  0.045  C3   HE0 3  
HE0 N4   N4   N 0 1 N N N N N N 17.003 -10.658 40.378 -5.219 0.995  0.483  N4   HE0 4  
HE0 C5   C5   C 0 1 N N R N N N 16.857 -12.088 40.445 -3.951 0.389  -0.012 C5   HE0 5  
HE0 C6   C6   C 0 1 N N R N N N 16.714 -12.638 39.010 -2.752 0.876  0.804  C6   HE0 6  
HE0 C7   C7   C 0 1 N N N N N N 16.362 -11.463 38.164 -2.938 0.491  2.249  C7   HE0 7  
HE0 N8   N8   N 0 1 N N N N N N 17.889 -13.231 38.416 -1.528 0.259  0.288  N8   HE0 8  
HE0 C9   C9   C 0 1 N N N N N N 18.229 -14.493 38.764 -0.338 0.867  0.469  C9   HE0 9  
HE0 O10  O10  O 0 1 N N N N N N 17.563 -15.174 39.510 -0.282 1.925  1.059  O10  HE0 10 
HE0 C11  C11  C 0 1 N N N N N N 19.585 -14.900 38.291 0.921  0.232  -0.062 C11  HE0 11 
HE0 C12  C12  C 0 1 N N N N N N 19.651 -16.233 37.580 2.121  1.120  0.276  C12  HE0 12 
HE0 C13  C13  C 0 1 N N N N N N 21.058 -16.787 37.503 3.399  0.475  -0.263 C13  HE0 13 
HE0 C14  C14  C 0 1 N N N N N N 22.025 -15.752 36.891 4.599  1.363  0.074  C14  HE0 14 
HE0 C15  C15  C 0 1 N N S N N N 23.450 -16.294 36.705 5.878  0.719  -0.465 C15  HE0 15 
HE0 C16  C16  C 0 1 N N N N N N 24.262 -15.251 35.975 7.042  1.649  -0.242 C16  HE0 16 
HE0 O17  O17  O 0 1 N N N N N N 24.135 -15.173 34.773 7.979  1.294  0.434  O17  HE0 17 
HE0 O18  O18  O 0 1 N N N N N N 24.979 -14.424 36.728 7.038  2.873  -0.793 O18  HE0 18 
HE0 N19  N19  N 0 1 N N N N N N 24.001 -16.707 37.981 6.121  -0.544 0.237  N19  HE0 19 
HE0 C20  C20  C 0 1 N N N N N N 24.515 -17.932 38.191 6.844  -1.515 -0.355 C20  HE0 20 
HE0 O21  O21  O 0 1 N N N N N N 24.579 -18.814 37.365 7.294  -1.344 -1.469 O21  HE0 21 
HE0 C22  C22  C 0 1 N N N N N N 25.053 -18.134 39.566 7.095  -2.815 0.366  C22  HE0 22 
HE0 N23  N23  N 0 1 N N N N N N 25.848 -19.378 39.631 7.901  -3.700 -0.485 N23  HE0 23 
HE0 C24  C24  C 0 1 N N N N N N 18.494 -10.412 43.054 -6.364 -1.786 -1.497 C24  HE0 24 
HE0 C25  C25  C 0 1 N N N N N N 20.446 -10.924 41.592 -6.883 -2.094 0.944  C25  HE0 25 
HE0 C26  C26  C 0 1 N N N N N N 17.810 -8.420  40.962 -6.834 0.729  -1.297 C26  HE0 26 
HE0 O27  O27  O 0 1 N N N N N N 16.665 -8.194  41.446 -8.099 0.532  -1.697 O27  HE0 27 
HE0 O28  O28  O 0 1 N N N N N N 18.789 -7.722  41.163 -6.059 1.319  -2.011 O28  HE0 28 
HE0 O29  O29  O 0 1 N N N N N N 17.047 -10.864 37.406 -2.131 -0.225 2.792  O29  HE0 29 
HE0 H3   H3   H 0 1 N N N N N N 18.825 -9.943  39.785 -7.186 0.351  0.765  H3   HE0 30 
HE0 HN4  HN4  H 0 1 N N N N N N 16.305 -10.285 40.989 -5.299 1.957  0.189  HN4  HE0 31 
HE0 H5   H5   H 0 1 N N N N N N 15.963 -12.359 41.026 -3.809 0.588  -1.074 H5   HE0 32 
HE0 H6   H6   H 0 1 N N N N N N 15.883 -13.358 38.993 -2.674 1.960  0.724  H6   HE0 33 
HE0 H7   H7   H 0 1 N N N N N N 15.345 -11.110 38.254 -3.793 0.855  2.799  H7   HE0 34 
HE0 HN8  HN8  H 0 1 N N N N N N 18.441 -12.718 37.759 -1.572 -0.588 -0.183 HN8  HE0 35 
HE0 H11  H11  H 0 1 N N N N N N 19.949 -14.127 37.598 1.054  -0.748 0.396  H11  HE0 36 
HE0 H11A H11A H 0 0 N N N N N N 20.249 -14.949 39.166 0.844  0.121  -1.143 H11A HE0 37 
HE0 H12  H12  H 0 1 N N N N N N 19.019 -16.952 38.122 1.987  2.100  -0.182 H12  HE0 38 
HE0 H12A H12A H 0 0 N N N N N N 19.267 -16.105 36.557 2.198  1.231  1.357  H12A HE0 39 
HE0 H13  H13  H 0 1 N N N N N N 21.400 -17.044 38.517 3.533  -0.505 0.194  H13  HE0 40 
HE0 H13A H13A H 0 0 N N N N N N 21.055 -17.691 36.877 3.322  0.364  -1.345 H13A HE0 41 
HE0 H14  H14  H 0 1 N N N N N N 21.635 -15.447 35.908 4.466  2.343  -0.383 H14  HE0 42 
HE0 H14A H14A H 0 0 N N N N N N 22.068 -14.877 37.556 4.676  1.474  1.156  H14A HE0 43 
HE0 H15  H15  H 0 1 N N N N N N 23.382 -17.178 36.054 5.766  0.526  -1.532 H15  HE0 44 
HE0 HO18 HO18 H 0 0 N N N N N N 25.378 -13.760 36.178 7.807  3.434  -0.622 HO18 HE0 45 
HE0 HN19 HN19 H 0 0 N N N N N N 23.999 -16.053 38.737 5.762  -0.682 1.127  HN19 HE0 46 
HE0 H22  H22  H 0 1 N N N N N N 25.693 -17.280 39.834 7.629  -2.617 1.295  H22  HE0 47 
HE0 H22A H22A H 0 0 N N N N N N 24.216 -18.201 40.276 6.142  -3.295 0.590  H22A HE0 48 
HE0 HN23 HN23 H 0 0 N N N N N N 26.202 -19.500 40.558 8.762  -3.251 -0.760 HN23 HE0 49 
HE0 HN2A HN2A H 0 0 N N N N N N 25.269 -20.157 39.390 8.083  -4.578 -0.023 HN2A HE0 50 
HE0 H24  H24  H 0 1 N N N N N N 18.888 -9.395  43.201 -6.068 -2.831 -1.586 H24  HE0 51 
HE0 H24A H24A H 0 0 N N N N N N 17.395 -10.390 43.104 -7.429 -1.691 -1.706 H24A HE0 52 
HE0 H24B H24B H 0 0 N N N N N N 18.883 -11.073 43.842 -5.799 -1.187 -2.212 H24B HE0 53 
HE0 H25  H25  H 0 1 N N N N N N 20.806 -9.896  41.742 -6.684 -1.711 1.945  H25  HE0 54 
HE0 H25A H25A H 0 0 N N N N N N 20.860 -11.576 42.376 -7.946 -1.997 0.723  H25A HE0 55 
HE0 H25B H25B H 0 0 N N N N N N 20.771 -11.286 40.605 -6.595 -3.144 0.892  H25B HE0 56 
HE0 HO27 HO27 H 0 0 N N N N N N 16.696 -7.408  41.979 -8.344 0.880  -2.566 HO27 HE0 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HE0 C5  S1   SING N N 1  
HE0 S1  C2   SING N N 2  
HE0 C3  C2   SING N N 3  
HE0 C25 C2   SING N N 4  
HE0 C2  C24  SING N N 5  
HE0 N4  C3   SING N N 6  
HE0 C3  C26  SING N N 7  
HE0 C3  H3   SING N N 8  
HE0 N4  C5   SING N N 9  
HE0 N4  HN4  SING N N 10 
HE0 C6  C5   SING N N 11 
HE0 C5  H5   SING N N 12 
HE0 C7  C6   SING N N 13 
HE0 N8  C6   SING N N 14 
HE0 C6  H6   SING N N 15 
HE0 O29 C7   DOUB N N 16 
HE0 C7  H7   SING N N 17 
HE0 N8  C9   SING N N 18 
HE0 N8  HN8  SING N N 19 
HE0 C11 C9   SING N N 20 
HE0 C9  O10  DOUB N N 21 
HE0 C12 C11  SING N N 22 
HE0 C11 H11  SING N N 23 
HE0 C11 H11A SING N N 24 
HE0 C13 C12  SING N N 25 
HE0 C12 H12  SING N N 26 
HE0 C12 H12A SING N N 27 
HE0 C14 C13  SING N N 28 
HE0 C13 H13  SING N N 29 
HE0 C13 H13A SING N N 30 
HE0 C15 C14  SING N N 31 
HE0 C14 H14  SING N N 32 
HE0 C14 H14A SING N N 33 
HE0 C16 C15  SING N N 34 
HE0 C15 N19  SING N N 35 
HE0 C15 H15  SING N N 36 
HE0 O17 C16  DOUB N N 37 
HE0 C16 O18  SING N N 38 
HE0 O18 HO18 SING N N 39 
HE0 N19 C20  SING N N 40 
HE0 N19 HN19 SING N N 41 
HE0 O21 C20  DOUB N N 42 
HE0 C20 C22  SING N N 43 
HE0 C22 N23  SING N N 44 
HE0 C22 H22  SING N N 45 
HE0 C22 H22A SING N N 46 
HE0 N23 HN23 SING N N 47 
HE0 N23 HN2A SING N N 48 
HE0 C24 H24  SING N N 49 
HE0 C24 H24A SING N N 50 
HE0 C24 H24B SING N N 51 
HE0 C25 H25  SING N N 52 
HE0 C25 H25A SING N N 53 
HE0 C25 H25B SING N N 54 
HE0 C26 O28  DOUB N N 55 
HE0 C26 O27  SING N N 56 
HE0 O27 HO27 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HE0 SMILES           ACDLabs              12.01 "O=C(NC(C=O)C1SC(C(N1)C(=O)O)(C)C)CCCCC(C(=O)O)NC(=O)CN"                                                                                                                                           
HE0 InChI            InChI                1.03  "InChI=1S/C17H28N4O7S/c1-17(2)13(16(27)28)21-14(29-17)10(8-22)20-11(23)6-4-3-5-9(15(25)26)19-12(24)7-18/h8-10,13-14,21H,3-7,18H2,1-2H3,(H,19,24)(H,20,23)(H,25,26)(H,27,28)/t9-,10+,13-,14+/m0/s1" 
HE0 InChIKey         InChI                1.03  GWAZTQMEPPXKKK-GIFSMMMISA-N                                                                                                                                                                        
HE0 SMILES_CANONICAL CACTVS               3.370 "CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC(=O)CCCC[C@H](NC(=O)CN)C(O)=O)C=O"                                                                                                                            
HE0 SMILES           CACTVS               3.370 "CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC(=O)CCCC[CH](NC(=O)CN)C(O)=O)C=O"                                                                                                                                 
HE0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)CCCC[C@@H](C(=O)O)NC(=O)CN)C(=O)O)C"                                                                                                                        
HE0 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1(C(NC(S1)C(C=O)NC(=O)CCCCC(C(=O)O)NC(=O)CN)C(=O)O)C"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HE0 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4S)-2-[(1R)-1-{[(6S)-6-carboxy-6-(glycylamino)hexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"                                         
HE0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4S)-2-[(1R)-1-[[(6S)-6-(2-azanylethanoylamino)-7-oxidanyl-7-oxidanylidene-heptanoyl]amino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HE0 "Create component" 2012-02-28 RCSB 
HE0 "Modify synonyms"  2021-03-13 RCSB 
HE0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      HE0 
_pdbx_chem_comp_synonyms.name         "Penicillin analog, bound/open form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            HE0 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
