data_H60
# 
_chem_comp.id                                    H60 
_chem_comp.name                                  "(2~{S})-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]hexanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H31 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        413.510 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H60 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7DGF 
_chem_comp.pdbx_subcomponent_list                "TCA NLE ELF" 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H60 C20 C5  C 0 1 N N N N N N -11.085 11.880 69.285 -2.333 0.145  -0.370 C1  TCA 1  
H60 O29 O3  O 0 1 N N N N N N -11.523 12.013 68.193 -2.197 0.444  -1.542 O   TCA 2  
H60 C21 C6  C 0 1 N N N N N N -10.740 10.483 69.831 -3.608 -0.398 0.104  C2  TCA 3  
H60 C22 C7  C 0 1 N N N N N N -10.170 9.610  68.982 -4.632 -0.563 -0.757 C3  TCA 4  
H60 C23 C21 C 0 1 Y N N N N N -9.962  8.252  69.759 -5.913 -1.110 -0.281 C31 TCA 5  
H60 C24 C8  C 0 1 Y N N N N N -9.560  8.271  71.112 -6.978 -1.282 -1.171 C32 TCA 6  
H60 C25 C22 C 0 1 Y N N N N N -9.389  7.064  71.816 -8.175 -1.794 -0.717 C33 TCA 7  
H60 C26 C9  C 0 1 Y N N N N N -9.635  5.848  71.177 -8.324 -2.138 0.615  C34 TCA 8  
H60 C27 C23 C 0 1 Y N N N N N -10.052 5.828  69.826 -7.275 -1.970 1.502  C35 TCA 9  
H60 C28 C10 C 0 1 Y N N N N N -10.224 7.029  69.121 -6.070 -1.465 1.062  C36 TCA 10 
H60 N19 N3  N 0 1 N N N N N N -10.906 13.029 70.146 -1.309 0.310  0.491  N   NLE 11 
H60 C14 C18 C 0 1 N N S N N N -11.273 14.349 69.699 -0.034 0.854  0.017  CA  NLE 12 
H60 C13 C2  C 0 1 N N N N N N -10.511 14.837 68.448 1.077  0.389  0.923  C   NLE 13 
H60 O30 O4  O 0 1 N N N N N N -9.317  14.777 68.383 0.829  -0.325 1.870  O   NLE 14 
H60 C15 C3  C 0 1 N N N N N N -11.108 15.308 70.873 -0.096 2.382  0.028  CB  NLE 15 
H60 C16 C19 C 0 1 N N N N N N -11.611 14.609 72.162 -1.140 2.857  -0.985 CG  NLE 16 
H60 C17 C4  C 0 1 N N N N N N -12.188 15.564 73.195 -1.202 4.386  -0.974 CD  NLE 17 
H60 C18 C20 C 0 1 N N N N N N -11.284 15.721 74.423 -2.247 4.861  -1.987 CE  NLE 18 
H60 C07 C16 C 0 1 N N N N N N -8.620  12.326 64.587 4.664  -3.251 -0.752 C6  ELF 19 
H60 C03 C12 C 0 1 N N S N N N -10.616 15.850 66.140 3.428  0.318  1.559  C11 ELF 20 
H60 C06 C15 C 0 1 N N N N N N -9.388  13.139 65.524 4.488  -2.181 0.333  C13 ELF 21 
H60 C10 C1  C 0 1 N N N N N N -11.417 12.649 63.973 5.874  -0.770 -1.168 C15 ELF 22 
H60 C04 C13 C 0 1 N N N N N N -10.979 14.933 64.944 4.739  0.265  0.772  C17 ELF 23 
H60 C02 C11 C 0 1 N N N N N N -11.077 17.270 65.848 3.572  1.279  2.711  C24 ELF 24 
H60 C05 C14 C 0 1 N N S N N N -10.759 13.381 65.232 4.636  -0.804 -0.318 C25 ELF 25 
H60 C08 C17 C 0 1 N N N N N N -9.341  11.145 64.044 6.114  -3.224 -1.237 C27 ELF 26 
H60 N12 N1  N 0 1 N N N N N N -11.294 15.373 67.344 2.348  0.769  0.679  N3  ELF 27 
H60 N09 N2  N 0 1 N N N N N N -10.648 11.488 63.352 6.510  -1.865 -1.586 N4  ELF 28 
H60 O01 O1  O 0 1 N N N N N N -10.609 17.854 64.896 2.847  2.242  2.788  O3  ELF 29 
H60 O11 O2  O 0 1 N N N N N N -12.480 13.014 63.541 6.320  0.310  -1.491 O4  ELF 30 
H60 H6  H6  H 0 1 N N N N N N -10.948 10.214 70.856 -3.727 -0.668 1.143  H2  TCA 31 
H60 H8  H8  H 0 1 N N N N N N -9.903  9.803  67.954 -4.512 -0.294 -1.796 H3  TCA 32 
H60 H10 H10 H 0 1 N N N N N N -9.383  9.214  71.608 -6.863 -1.013 -2.211 H32 TCA 33 
H60 H30 H30 H 0 1 N N N N N N -9.068  7.079  72.847 -8.998 -1.927 -1.403 H33 TCA 34 
H60 H11 H11 H 0 1 N N N N N N -9.507  4.921  71.715 -9.264 -2.539 0.964  H34 TCA 35 
H60 H31 H31 H 0 1 N N N N N N -10.239 4.885  69.335 -7.399 -2.240 2.540  H35 TCA 36 
H60 H12 H12 H 0 1 N N N N N N -10.556 7.013  68.093 -5.251 -1.339 1.755  H36 TCA 37 
H60 H33 H33 H 0 1 N N N N N N -10.523 12.906 71.062 -1.416 0.068  1.424  HN2 NLE 38 
H60 H24 H24 H 0 1 N N N N N N -12.342 14.337 69.438 0.155  0.505  -0.998 HA  NLE 39 
H60 H2  H2  H 0 1 N N N N N N -10.047 15.574 70.987 -0.373 2.728  1.024  HB2 NLE 40 
H60 H3  H3  H 0 1 N N N N N N -11.697 16.219 70.692 0.880  2.787  -0.240 HB3 NLE 41 
H60 H25 H25 H 0 1 N N N N N N -12.393 13.888 71.882 -0.864 2.512  -1.981 HG2 NLE 42 
H60 H26 H26 H 0 1 N N N N N N -10.765 14.074 72.619 -2.116 2.452  -0.718 HG3 NLE 43 
H60 H4  H4  H 0 1 N N N N N N -12.321 16.551 72.727 -1.479 4.731  0.022  HD2 NLE 44 
H60 H5  H5  H 0 1 N N N N N N -13.165 15.179 73.524 -0.227 4.791  -1.241 HD3 NLE 45 
H60 H27 H27 H 0 1 N N N N N N -11.749 16.420 75.134 -1.970 4.516  -2.983 HE1 NLE 46 
H60 H28 H28 H 0 1 N N N N N N -11.149 14.742 74.906 -3.222 4.456  -1.719 HE2 NLE 47 
H60 H29 H29 H 0 1 N N N N N N -10.305 16.113 74.110 -2.291 5.950  -1.979 HE3 NLE 48 
H60 H20 H20 H 0 1 N N N N N N -7.719  11.967 65.106 4.435  -4.233 -0.338 H1  ELF 49 
H60 H21 H21 H 0 1 N N N N N N -8.326  12.965 63.741 3.994  -3.040 -1.585 H2  ELF 50 
H60 H14 H14 H 0 1 N N N N N N -9.526  15.840 66.285 3.194  -0.675 1.942  H3  ELF 51 
H60 H18 H18 H 0 1 N N N N N N -9.346  12.638 66.502 3.499  -2.271 0.780  H4  ELF 52 
H60 H19 H19 H 0 1 N N N N N N -8.890  14.118 65.591 5.251  -2.309 1.101  H5  ELF 53 
H60 H15 H15 H 0 1 N N N N N N -10.353 15.218 64.086 4.926  1.235  0.313  H6  ELF 54 
H60 H16 H16 H 0 1 N N N N N N -12.038 15.092 64.694 5.559  0.018  1.447  H7  ELF 55 
H60 H13 H13 H 0 1 N N N N N N -11.810 17.750 66.480 4.324  1.107  3.467  H8  ELF 56 
H60 H17 H17 H 0 1 N N N N N N -11.369 13.124 66.111 3.765  -0.602 -0.941 H9  ELF 57 
H60 H22 H22 H 0 1 N N N N N N -9.559  10.459 64.876 6.765  -3.596 -0.446 H10 ELF 58 
H60 H23 H23 H 0 1 N N N N N N -8.686  10.643 63.317 6.212  -3.862 -2.115 H11 ELF 59 
H60 H1  H1  H 0 1 N N N N N N -12.291 15.415 67.409 2.546  1.340  -0.079 H12 ELF 60 
H60 H32 H32 H 0 1 N N N N N N -10.979 10.991 62.550 7.284  -1.751 -2.159 H15 ELF 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H60 N09 C10 SING N N 1  
H60 N09 C08 SING N N 2  
H60 O11 C10 DOUB N N 3  
H60 C10 C05 SING N N 4  
H60 C08 C07 SING N N 5  
H60 C07 C06 SING N N 6  
H60 O01 C02 DOUB N N 7  
H60 C04 C05 SING N N 8  
H60 C04 C03 SING N N 9  
H60 C05 C06 SING N N 10 
H60 C02 C03 SING N N 11 
H60 C03 N12 SING N N 12 
H60 N12 C13 SING N N 13 
H60 O29 C20 DOUB N N 14 
H60 O30 C13 DOUB N N 15 
H60 C13 C14 SING N N 16 
H60 C22 C23 SING N N 17 
H60 C22 C21 DOUB N E 18 
H60 C28 C23 DOUB Y N 19 
H60 C28 C27 SING Y N 20 
H60 C20 C21 SING N N 21 
H60 C20 N19 SING N N 22 
H60 C14 N19 SING N N 23 
H60 C14 C15 SING N N 24 
H60 C23 C24 SING Y N 25 
H60 C27 C26 DOUB Y N 26 
H60 C15 C16 SING N N 27 
H60 C24 C25 DOUB Y N 28 
H60 C26 C25 SING Y N 29 
H60 C16 C17 SING N N 30 
H60 C17 C18 SING N N 31 
H60 N12 H1  SING N N 32 
H60 C15 H2  SING N N 33 
H60 C15 H3  SING N N 34 
H60 C17 H4  SING N N 35 
H60 C17 H5  SING N N 36 
H60 C21 H6  SING N N 37 
H60 C22 H8  SING N N 38 
H60 C24 H10 SING N N 39 
H60 C26 H11 SING N N 40 
H60 C28 H12 SING N N 41 
H60 C02 H13 SING N N 42 
H60 C03 H14 SING N N 43 
H60 C04 H15 SING N N 44 
H60 C04 H16 SING N N 45 
H60 C05 H17 SING N N 46 
H60 C06 H18 SING N N 47 
H60 C06 H19 SING N N 48 
H60 C07 H20 SING N N 49 
H60 C07 H21 SING N N 50 
H60 C08 H22 SING N N 51 
H60 C08 H23 SING N N 52 
H60 C14 H24 SING N N 53 
H60 C16 H25 SING N N 54 
H60 C16 H26 SING N N 55 
H60 C18 H27 SING N N 56 
H60 C18 H28 SING N N 57 
H60 C18 H29 SING N N 58 
H60 C25 H30 SING N N 59 
H60 C27 H31 SING N N 60 
H60 N09 H32 SING N N 61 
H60 N19 H33 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H60 InChI            InChI                1.03  "InChI=1S/C23H31N3O4/c1-2-3-11-20(26-21(28)13-12-17-8-5-4-6-9-17)23(30)25-19(16-27)15-18-10-7-14-24-22(18)29/h4-6,8-9,12-13,16,18-20H,2-3,7,10-11,14-15H2,1H3,(H,24,29)(H,25,30)(H,26,28)/b13-12+/t18-,19-,20-/m0/s1" 
H60 InChIKey         InChI                1.03  MBIWELOVLSUPFE-GITLDSMSSA-N                                                                                                                                                                                           
H60 SMILES_CANONICAL CACTVS               3.385 "CCCC[C@H](NC(=O)/C=C/c1ccccc1)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O"                                                                                                                                                     
H60 SMILES           CACTVS               3.385 "CCCC[CH](NC(=O)C=Cc1ccccc1)C(=O)N[CH](C[CH]2CCCNC2=O)C=O"                                                                                                                                                            
H60 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)/C=C/c2ccccc2"                                                                                                                                                    
H60 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C=Cc2ccccc2"                                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           H60 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]hexanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H60 "Create component"         2020-11-17 PDBJ 
H60 "Modify component comp_id" 2020-11-18 PDBJ 
H60 "Initial release"          2021-11-24 RCSB 
H60 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            H60 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
