data_GX0
#

_chem_comp.id                                   GX0
_chem_comp.name                                 "1-[(4-chlorophenyl)methyl]-2-(pyrrolidin-1-ylmethyl)benzimidazole"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 Cl N3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Clemizole
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-29
_chem_comp.pdbx_modified_date                   2021-03-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.835
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GX0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7D4P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GX0  C7   C1   C   0  1  N  N  N  162.012  177.958  156.016   0.540   0.669  -1.940  C7   GX0   1  
GX0  N2   N1   N   0  1  Y  N  N  165.544  177.707  155.173   2.648  -1.250   0.251  N2   GX0   2  
GX0  C    C2   C   0  1  N  N  N  166.172  174.663  155.021  -1.297  -3.426  -0.824  C    GX0   3  
GX0  N    N2   N   0  1  N  N  N  164.792  174.877  154.543  -0.328  -2.468  -0.234  N    GX0   4  
GX0  CL   CL1  CL  0  0  N  N  N  161.375  177.949  162.080  -4.473   2.195   1.000  CL   GX0   5  
GX0  C1   C3   C   0  1  N  N  N  164.166  173.552  154.318   0.067  -3.044   1.070  C1   GX0   6  
GX0  N1   N3   N   0  1  Y  N  N  163.422  178.149  155.680   1.526   0.152  -0.988  N1   GX0   7  
GX0  C2   C4   C   0  1  N  N  N  166.556  173.259  154.572  -2.138  -3.881   0.395  C2   GX0   8  
GX0  C3   C5   C   0  1  N  N  N  165.253  172.489  154.416  -1.088  -3.953   1.530  C3   GX0   9  
GX0  C4   C6   C   0  1  N  N  N  164.012  175.682  155.503   0.840  -2.295  -1.108  C4   GX0  10  
GX0  C5   C7   C   0  1  Y  N  N  164.325  177.167  155.448   1.676  -1.146  -0.608  C5   GX0  11  
GX0  C6   C8   C   0  1  Y  N  N  164.028  179.342  155.560   2.476   0.891  -0.312  C6   GX0  12  
GX0  C8   C9   C   0  1  Y  N  N  165.437  179.052  155.219   3.188  -0.025   0.480  C8   GX0  13  
GX0  C9   C10  C   0  1  Y  N  N  161.852  177.941  157.521  -0.718   1.051  -1.203  C9   GX0  14  
GX0  C10  C11  C   0  1  Y  N  N  163.616  180.671  155.677   2.812   2.238  -0.282  C10  GX0  15  
GX0  C11  C12  C   0  1  Y  N  N  166.318  180.107  155.024   4.230   0.432   1.291  C11  GX0  16  
GX0  C12  C13  C   0  1  Y  N  N  164.532  181.702  155.475   3.843   2.666   0.526  C12  GX0  17  
GX0  C13  C14  C   0  1  Y  N  N  165.860  181.418  155.155   4.547   1.761   1.308  C13  GX0  18  
GX0  C14  C15  C   0  1  Y  N  N  161.262  179.031  158.157  -0.865   2.334  -0.708  C14  GX0  19  
GX0  C15  C16  C   0  1  Y  N  N  162.305  176.854  158.269  -1.725   0.122  -1.026  C15  GX0  20  
GX0  C16  C17  C   0  1  Y  N  N  161.115  179.034  159.540  -2.018   2.686  -0.032  C16  GX0  21  
GX0  C17  C18  C   0  1  Y  N  N  162.160  176.856  159.654  -2.879   0.472  -0.350  C17  GX0  22  
GX0  C18  C19  C   0  1  Y  N  N  161.565  177.947  160.290  -3.024   1.754   0.150  C18  GX0  23  
GX0  H1   H1   H   0  1  N  N  N  161.419  178.782  155.593   0.946   1.545  -2.445  H1   GX0  24  
GX0  H2   H2   H   0  1  N  N  N  161.661  177.002  155.599   0.308  -0.100  -2.678  H2   GX0  25  
GX0  H3   H3   H   0  1  N  N  N  166.851  175.406  154.576  -1.927  -2.931  -1.562  H3   GX0  26  
GX0  H4   H4   H   0  1  N  N  N  166.213  174.739  156.118  -0.777  -4.274  -1.270  H4   GX0  27  
GX0  H6   H6   H   0  1  N  N  N  163.705  173.523  153.320   0.979  -3.631   0.958  H6   GX0  28  
GX0  H7   H7   H   0  1  N  N  N  163.396  173.369  155.082   0.223  -2.245   1.795  H7   GX0  29  
GX0  H8   H8   H   0  1  N  N  N  167.194  172.779  155.328  -2.908  -3.145   0.629  H8   GX0  30  
GX0  H9   H9   H   0  1  N  N  N  167.092  173.299  153.612  -2.584  -4.859   0.213  H9   GX0  31  
GX0  H10  H10  H   0  1  N  N  N  165.081  171.842  155.289  -0.738  -4.977   1.653  H10  GX0  32  
GX0  H11  H11  H   0  1  N  N  N  165.275  171.875  153.503  -1.512  -3.582   2.464  H11  GX0  33  
GX0  H12  H12  H   0  1  N  N  N  162.943  175.544  155.285   1.436  -3.207  -1.103  H12  GX0  34  
GX0  H13  H13  H   0  1  N  N  N  164.229  175.318  156.518   0.505  -2.085  -2.124  H13  GX0  35  
GX0  H14  H14  H   0  1  N  N  N  162.590  180.900  155.924   2.268   2.946  -0.889  H14  GX0  36  
GX0  H15  H15  H   0  1  N  N  N  167.350  179.914  154.773   4.784  -0.264   1.905  H15  GX0  37  
GX0  H16  H16  H   0  1  N  N  N  164.211  182.729  155.567   4.106   3.713   0.550  H16  GX0  38  
GX0  H17  H17  H   0  1  N  N  N  166.551  182.234  155.005   5.353   2.111   1.936  H17  GX0  39  
GX0  H18  H18  H   0  1  N  N  N  160.919  179.874  157.576  -0.079   3.061  -0.850  H18  GX0  40  
GX0  H19  H19  H   0  1  N  N  N  162.767  176.012  157.775  -1.611  -0.879  -1.416  H19  GX0  41  
GX0  H20  H20  H   0  1  N  N  N  160.653  179.877  160.033  -2.133   3.687   0.356  H20  GX0  42  
GX0  H21  H21  H   0  1  N  N  N  162.507  176.015  160.235  -3.666  -0.254  -0.213  H21  GX0  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GX0  C1   C3   SING  N  N   1  
GX0  C1   N    SING  N  N   2  
GX0  C3   C2   SING  N  N   3  
GX0  N    C    SING  N  N   4  
GX0  N    C4   SING  N  N   5  
GX0  C2   C    SING  N  N   6  
GX0  C11  C13  DOUB  Y  N   7  
GX0  C11  C8   SING  Y  N   8  
GX0  C13  C12  SING  Y  N   9  
GX0  N2   C8   SING  Y  N  10  
GX0  N2   C5   DOUB  Y  N  11  
GX0  C8   C6   DOUB  Y  N  12  
GX0  C5   C4   SING  N  N  13  
GX0  C5   N1   SING  Y  N  14  
GX0  C12  C10  DOUB  Y  N  15  
GX0  C6   C10  SING  Y  N  16  
GX0  C6   N1   SING  Y  N  17  
GX0  N1   C7   SING  N  N  18  
GX0  C7   C9   SING  N  N  19  
GX0  C9   C14  DOUB  Y  N  20  
GX0  C9   C15  SING  Y  N  21  
GX0  C14  C16  SING  Y  N  22  
GX0  C15  C17  DOUB  Y  N  23  
GX0  C16  C18  DOUB  Y  N  24  
GX0  C17  C18  SING  Y  N  25  
GX0  C18  CL   SING  N  N  26  
GX0  C7   H1   SING  N  N  27  
GX0  C7   H2   SING  N  N  28  
GX0  C    H3   SING  N  N  29  
GX0  C    H4   SING  N  N  30  
GX0  C1   H6   SING  N  N  31  
GX0  C1   H7   SING  N  N  32  
GX0  C2   H8   SING  N  N  33  
GX0  C2   H9   SING  N  N  34  
GX0  C3   H10  SING  N  N  35  
GX0  C3   H11  SING  N  N  36  
GX0  C4   H12  SING  N  N  37  
GX0  C4   H13  SING  N  N  38  
GX0  C10  H14  SING  N  N  39  
GX0  C11  H15  SING  N  N  40  
GX0  C12  H16  SING  N  N  41  
GX0  C13  H17  SING  N  N  42  
GX0  C14  H18  SING  N  N  43  
GX0  C15  H19  SING  N  N  44  
GX0  C16  H20  SING  N  N  45  
GX0  C17  H21  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GX0  InChI             InChI                 1.03   "InChI=1S/C19H20ClN3/c20-16-9-7-15(8-10-16)13-23-18-6-2-1-5-17(18)21-19(23)14-22-11-3-4-12-22/h1-2,5-10H,3-4,11-14H2"  
GX0  InChIKey          InChI                 1.03   CJXAEXPPLWQRFR-UHFFFAOYSA-N  
GX0  SMILES_CANONICAL  CACTVS                3.385  "Clc1ccc(Cn2c(CN3CCCC3)nc4ccccc24)cc1"  
GX0  SMILES            CACTVS                3.385  "Clc1ccc(Cn2c(CN3CCCC3)nc4ccccc24)cc1"  
GX0  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)nc(n2Cc3ccc(cc3)Cl)CN4CCCC4"  
GX0  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)nc(n2Cc3ccc(cc3)Cl)CN4CCCC4"  
#
_pdbx_chem_comp_identifier.comp_id          GX0
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1-[(4-chlorophenyl)methyl]-2-(pyrrolidin-1-ylmethyl)benzimidazole"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GX0
_pdbx_chem_comp_synonyms.name        Clemizole
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GX0  "Create component"  2020-09-29  PDBJ  
GX0  "Modify synonyms"   2021-03-01  PDBE  
GX0  "Initial release"   2021-03-31  RCSB  
##
