data_GT0
#

_chem_comp.id                                   GT0
_chem_comp.name                                 "5-(hydroxymethyl)-4-(methoxymethyl)-2-methylpyridin-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H13 N O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ginkgotoxin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-04-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       183.204
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GT0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4EN4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GT0  C8   C8   C  0  1  Y  N  N  28.731   8.124  39.588   1.102   1.725   0.183  C8   GT0   1  
GT0  N1   N1   N  0  1  Y  N  N  29.626   8.826  38.749   2.188   0.986   0.282  N1   GT0   2  
GT0  C7   C7   C  0  1  Y  N  N  30.567   8.151  37.962   2.158  -0.320   0.104  C7   GT0   3  
GT0  C4   C4   C  0  1  Y  N  N  30.638   6.733  38.008   0.968  -0.966  -0.197  C4   GT0   4  
GT0  C6   C6   C  0  1  Y  N  N  29.743   6.007  38.858  -0.198  -0.216  -0.309  C6   GT0   5  
GT0  C2   C2   C  0  1  Y  N  N  28.776   6.714  39.659  -0.122   1.154  -0.114  C2   GT0   6  
GT0  C1   C1   C  0  1  N  N  N  29.843   4.461  38.900  -1.513  -0.877  -0.635  C1   GT0   7  
GT0  O3   O3   O  0  1  N  N  N  30.372   4.011  40.177  -2.167  -1.259   0.577  O3   GT0   8  
GT0  C3   C3   C  0  1  N  N  N  31.794   4.242  40.282  -3.429  -1.898   0.380  C3   GT0   9  
GT0  C5   C5   C  0  1  N  N  N  27.789   5.966  40.582  -1.358   2.009  -0.219  C5   GT0  10  
GT0  O2   O2   O  0  1  N  N  N  26.923   6.890  41.271  -1.015   3.374   0.029  O2   GT0  11  
GT0  C9   C9   C  0  1  N  N  N  31.498   8.962  37.080   3.429  -1.120   0.228  C9   GT0  12  
GT0  O1   O1   O  0  1  N  N  N  31.570   6.048  37.230   0.942  -2.312  -0.381  O1   GT0  13  
GT0  H1   H1   H  0  1  N  N  N  28.009   8.669  40.178   1.167   2.792   0.341  H1   GT0  14  
GT0  H2   H2   H  0  1  N  N  N  28.841   4.031  38.753  -2.145  -0.178  -1.183  H2   GT0  15  
GT0  H3   H3   H  0  1  N  N  N  30.510   4.121  38.094  -1.334  -1.761  -1.246  H3   GT0  16  
GT0  H4   H4   H  0  1  N  N  N  32.152   3.888  41.260  -3.861  -2.157   1.347  H4   GT0  17  
GT0  H5   H5   H  0  1  N  N  N  32.314   3.696  39.482  -4.101  -1.221  -0.148  H5   GT0  18  
GT0  H6   H6   H  0  1  N  N  N  31.999   5.318  40.184  -3.290  -2.804  -0.210  H6   GT0  19  
GT0  H7   H7   H  0  1  N  N  N  27.176   5.283  39.975  -1.780   1.916  -1.219  H7   GT0  20  
GT0  H8   H8   H  0  1  N  N  N  28.359   5.386  41.323  -2.091   1.680   0.517  H8   GT0  21  
GT0  H9   H9   H  0  1  N  N  N  26.326   6.408  41.831  -1.764   3.983  -0.022  H9   GT0  22  
GT0  H10  H10  H  0  1  N  N  N  31.278  10.033  37.200   3.918  -1.180  -0.744  H10  GT0  23  
GT0  H11  H11  H  0  1  N  N  N  32.541   8.767  37.371   4.096  -0.633   0.940  H11  GT0  24  
GT0  H12  H12  H  0  1  N  N  N  31.351   8.673  36.029   3.194  -2.125   0.579  H12  GT0  25  
GT0  H13  H13  H  0  1  N  N  N  31.483   5.114  37.380   0.778  -2.817   0.428  H13  GT0  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GT0  C9  C7   SING  N  N   1  
GT0  O1  C4   SING  N  N   2  
GT0  C7  C4   DOUB  Y  N   3  
GT0  C7  N1   SING  Y  N   4  
GT0  C4  C6   SING  Y  N   5  
GT0  N1  C8   DOUB  Y  N   6  
GT0  C6  C1   SING  N  N   7  
GT0  C6  C2   DOUB  Y  N   8  
GT0  C1  O3   SING  N  N   9  
GT0  C8  C2   SING  Y  N  10  
GT0  C2  C5   SING  N  N  11  
GT0  O3  C3   SING  N  N  12  
GT0  C5  O2   SING  N  N  13  
GT0  C8  H1   SING  N  N  14  
GT0  C1  H2   SING  N  N  15  
GT0  C1  H3   SING  N  N  16  
GT0  C3  H4   SING  N  N  17  
GT0  C3  H5   SING  N  N  18  
GT0  C3  H6   SING  N  N  19  
GT0  C5  H7   SING  N  N  20  
GT0  C5  H8   SING  N  N  21  
GT0  O2  H9   SING  N  N  22  
GT0  C9  H10  SING  N  N  23  
GT0  C9  H11  SING  N  N  24  
GT0  C9  H12  SING  N  N  25  
GT0  O1  H13  SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GT0  SMILES            ACDLabs               12.01  "Oc1c(c(cnc1C)CO)COC"  
GT0  InChI             InChI                 1.03   "InChI=1S/C9H13NO3/c1-6-9(12)8(5-13-2)7(4-11)3-10-6/h3,11-12H,4-5H2,1-2H3"  
GT0  InChIKey          InChI                 1.03   SVINQHQHARVZFF-UHFFFAOYSA-N  
GT0  SMILES_CANONICAL  CACTVS                3.370  "COCc1c(O)c(C)ncc1CO"  
GT0  SMILES            CACTVS                3.370  "COCc1c(O)c(C)ncc1CO"  
GT0  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1c(c(c(cn1)CO)COC)O"  
GT0  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1c(c(c(cn1)CO)COC)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GT0  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(hydroxymethyl)-4-(methoxymethyl)-2-methylpyridin-3-ol"  
GT0  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "5-(hydroxymethyl)-4-(methoxymethyl)-2-methyl-pyridin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GT0  "Create component"  2012-04-13  RCSB  
GT0  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GT0
_pdbx_chem_comp_synonyms.name        ginkgotoxin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
