data_A1AD0
# 
_chem_comp.id                                    A1AD0 
_chem_comp.name                                  "(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        439.547 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AD0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8VSG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AD0 N1   N1  N 0 1 N N N N N N -10.946 -1.969 -17.384 1.633  -0.847 -0.317 N1   A1AD0 1  
A1AD0 N3   N2  N 0 1 N N N N N N -10.853 -7.561 -13.693 -5.786 2.128  -1.573 N3   A1AD0 2  
A1AD0 C4   C1  C 0 1 N N S N N N -12.025 0.065  -18.003 1.803  -2.916 0.876  C4   A1AD0 3  
A1AD0 C5   C2  C 0 1 N N N N N N -11.473 -1.247 -18.552 2.248  -1.438 0.895  C5   A1AD0 4  
A1AD0 C6   C3  C 0 1 N N S N N N -11.197 -1.255 -16.112 0.287  -1.462 -0.382 C6   A1AD0 5  
A1AD0 C7   C4  C 0 1 N N R N N N -11.831 0.079  -16.520 0.510  -2.932 0.034  C7   A1AD0 6  
A1AD0 C8   C5  C 0 1 N N N N N N -12.165 -2.090 -15.249 -0.650 -0.780 0.581  C8   A1AD0 7  
A1AD0 C10  C6  C 0 1 N N N N N N -11.757 -4.341 -12.606 -4.272 -0.099 0.720  C10  A1AD0 8  
A1AD0 C13  C7  C 0 1 N N N N N N -11.945 -7.524 -14.620 -4.747 3.059  -1.116 C13  A1AD0 9  
A1AD0 C15  C8  C 0 1 N N N N N N -13.185 -2.323 -11.891 -3.017 -1.087 2.641  C15  A1AD0 10 
A1AD0 C17  C9  C 0 1 N N N N N N -10.328 -3.884 -18.721 3.526  0.646  -0.869 C17  A1AD0 11 
A1AD0 C20  C10 C 0 1 Y N N N N N -9.407  -3.416 -19.837 3.519  1.884  -0.011 C20  A1AD0 12 
A1AD0 C21  C11 C 0 1 Y N N N N N -8.202  -2.731 -19.539 2.436  2.742  -0.044 C21  A1AD0 13 
A1AD0 C22  C12 C 0 1 Y N N N N N -7.335  -2.333 -20.574 2.430  3.878  0.744  C22  A1AD0 14 
A1AD0 C24  C13 C 0 1 Y N N N N N -8.854  -3.279 -22.219 4.591  3.299  1.596  C24  A1AD0 15 
A1AD0 C1   C14 C 0 1 N N N N N N -9.617  1.069  -17.573 2.520  -2.999 -1.638 C1   A1AD0 16 
A1AD0 C2   C15 C 0 1 N N N N N N -11.127 1.116  -17.377 1.768  -3.641 -0.470 C2   A1AD0 17 
A1AD0 C3   C16 C 0 1 N N N N N N -11.598 2.556  -17.315 1.771  -5.171 -0.447 C3   A1AD0 18 
A1AD0 N2   N3  N 0 1 N N N N N N -11.869 -2.254 -13.953 -1.983 -0.911 0.431  N2   A1AD0 19 
A1AD0 C9   C17 C 0 1 N N S N N N -12.633 -3.147 -13.071 -2.894 -0.247 1.367  C9   A1AD0 20 
A1AD0 C11  C18 C 0 1 N N S N N N -11.209 -5.233 -13.733 -4.166 0.815  -0.503 C11  A1AD0 21 
A1AD0 C12  C19 C 0 1 N N N N N N -12.276 -5.990 -14.603 -3.927 2.279  -0.065 C12  A1AD0 22 
A1AD0 C14  C20 C 0 1 N N N N N N -10.442 -6.420 -13.214 -5.482 0.859  -1.247 C14  A1AD0 23 
A1AD0 O1   O1  O 0 1 N N N N N N -9.520  -6.298 -12.417 -6.166 -0.108 -1.506 O1   A1AD0 24 
A1AD0 O2   O2  O 0 1 N N N N N N -13.984 -3.134 -11.052 -3.638 -2.336 2.330  O2   A1AD0 25 
A1AD0 O3   O3  O 0 1 N N N N N N -13.142 -2.618 -15.778 -0.205 -0.113 1.491  O3   A1AD0 26 
A1AD0 C16  C21 C 0 1 N N N N N N -10.310 -3.160 -17.401 2.173  0.051  -1.164 C16  A1AD0 27 
A1AD0 C18  C22 C 0 1 N N N N N N -10.419 -5.401 -18.582 4.702  -0.320 -0.707 C18  A1AD0 28 
A1AD0 C19  C23 C 0 1 N N N N N N -11.641 -4.623 -18.977 4.593  0.549  -1.962 C19  A1AD0 29 
A1AD0 C23  C24 C 0 1 Y N N N N N -7.659  -2.616 -21.910 3.507  4.157  1.563  C23  A1AD0 30 
A1AD0 C25  C25 C 0 1 Y N N N N N -9.726  -3.679 -21.192 4.594  2.160  0.813  C25  A1AD0 31 
A1AD0 O4   O4  O 0 1 N N N N N N -9.761  -3.628 -16.404 1.571  0.381  -2.163 O4   A1AD0 32 
A1AD0 HN3  H1  H 0 1 N N N N N N -10.425 -8.424 -13.425 -6.590 2.393  -2.046 HN3  A1AD0 33 
A1AD0 HC4  H2  H 0 1 N N N N N N -12.997 0.402  -18.394 1.897  -3.493 1.796  HC4  A1AD0 34 
A1AD0 H5_1 H3  H 0 0 N N N N N N -12.272 -1.828 -19.035 3.334  -1.367 0.843  H5_1 A1AD0 35 
A1AD0 H5_2 H4  H 0 0 N N N N N N -10.670 -1.053 -19.279 1.876  -0.940 1.791  H5_2 A1AD0 36 
A1AD0 HC6  H5  H 0 1 N N N N N N -10.258 -1.080 -15.566 -0.107 -1.408 -1.397 HC6  A1AD0 37 
A1AD0 HC7  H6  H 0 1 N N N N N N -12.672 0.432  -15.905 -0.364 -3.510 0.334  HC7  A1AD0 38 
A1AD0 H102 H7  H 0 0 N N N N N N -12.366 -4.970 -11.940 -4.635 -1.079 0.410  H102 A1AD0 39 
A1AD0 H101 H8  H 0 0 N N N N N N -10.901 -3.937 -12.046 -4.967 0.336  1.439  H101 A1AD0 40 
A1AD0 H131 H9  H 0 0 N N N N N N -12.796 -8.128 -14.271 -4.110 3.352  -1.950 H131 A1AD0 41 
A1AD0 H132 H10 H 0 0 N N N N N N -11.641 -7.864 -15.621 -5.203 3.939  -0.662 H132 A1AD0 42 
A1AD0 HC15 H11 H 0 0 N N N N N N -12.345 -1.917 -11.309 -2.024 -1.267 3.054  HC15 A1AD0 43 
A1AD0 H1   H12 H 0 1 N N N N N N -13.795 -1.495 -12.282 -3.623 -0.551 3.372  H1   A1AD0 44 
A1AD0 HC21 H13 H 0 0 N N N N N N -7.948  -2.513 -18.512 1.594  2.524  -0.684 HC21 A1AD0 45 
A1AD0 HC22 H14 H 0 0 N N N N N N -6.420  -1.809 -20.340 1.583  4.548  0.718  HC22 A1AD0 46 
A1AD0 HC24 H15 H 0 0 N N N N N N -9.106  -3.483 -23.249 5.433  3.517  2.237  HC24 A1AD0 47 
A1AD0 H1_2 H16 H 0 0 N N N N N N -9.151  1.913  -17.043 3.382  -3.613 -1.897 H1_2 A1AD0 48 
A1AD0 H1_1 H17 H 0 0 N N N N N N -9.225  0.123  -17.172 1.856  -2.921 -2.499 H1_1 A1AD0 49 
A1AD0 H1_3 H18 H 0 0 N N N N N N -9.384  1.137  -18.646 2.857  -2.003 -1.349 H1_3 A1AD0 50 
A1AD0 H3_3 H19 H 0 0 N N N N N N -10.826 3.174  -16.833 1.645  -5.519 0.578  H3_3 A1AD0 51 
A1AD0 H3_2 H20 H 0 0 N N N N N N -11.780 2.926  -18.335 0.952  -5.546 -1.061 H3_2 A1AD0 52 
A1AD0 H3_1 H21 H 0 0 N N N N N N -12.529 2.612  -16.733 2.718  -5.539 -0.842 H3_1 A1AD0 53 
A1AD0 HN2  H22 H 0 1 N N N N N N -11.096 -1.748 -13.570 -2.339 -1.444 -0.296 HN2  A1AD0 54 
A1AD0 HC9  H23 H 0 1 N N N N N N -13.488 -3.554 -13.630 -2.503 0.738  1.618  HC9  A1AD0 55 
A1AD0 HC11 H24 H 0 0 N N N N N N -10.567 -4.633 -14.395 -3.366 0.477  -1.162 HC11 A1AD0 56 
A1AD0 H122 H25 H 0 0 N N N N N N -12.255 -5.599 -15.631 -2.870 2.537  -0.125 H122 A1AD0 57 
A1AD0 H121 H26 H 0 0 N N N N N N -13.276 -5.836 -14.172 -4.314 2.453  0.939  H121 A1AD0 58 
A1AD0 HO2  H27 H 0 1 N N N N N N -14.317 -2.613 -10.331 -3.748 -2.920 3.092  HO2  A1AD0 59 
A1AD0 H182 H28 H 0 0 N N N N N N -10.362 -5.865 -17.586 5.470  -0.059 0.021  H182 A1AD0 60 
A1AD0 H181 H29 H 0 0 N N N N N N -9.921  -6.050 -19.317 4.496  -1.385 -0.812 H181 A1AD0 61 
A1AD0 H191 H30 H 0 0 N N N N N N -12.477 -4.518 -18.270 4.317  0.055  -2.893 H191 A1AD0 62 
A1AD0 H192 H31 H 0 0 N N N N N N -12.035 -4.703 -20.001 5.291  1.381  -2.060 H192 A1AD0 63 
A1AD0 HC23 H32 H 0 0 N N N N N N -6.986  -2.322 -22.702 3.504  5.047  2.175  HC23 A1AD0 64 
A1AD0 HC25 H33 H 0 0 N N N N N N -10.645 -4.190 -21.437 5.441  1.490  0.839  HC25 A1AD0 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AD0 C24 C23  DOUB Y N 1  
A1AD0 C24 C25  SING Y N 2  
A1AD0 C23 C22  SING Y N 3  
A1AD0 C25 C20  DOUB Y N 4  
A1AD0 C22 C21  DOUB Y N 5  
A1AD0 C20 C21  SING Y N 6  
A1AD0 C20 C17  SING N N 7  
A1AD0 C19 C17  SING N N 8  
A1AD0 C19 C18  SING N N 9  
A1AD0 C17 C18  SING N N 10 
A1AD0 C17 C16  SING N N 11 
A1AD0 C5  C4   SING N N 12 
A1AD0 C5  N1   SING N N 13 
A1AD0 C4  C2   SING N N 14 
A1AD0 C4  C7   SING N N 15 
A1AD0 C1  C2   SING N N 16 
A1AD0 C16 N1   SING N N 17 
A1AD0 C16 O4   DOUB N N 18 
A1AD0 N1  C6   SING N N 19 
A1AD0 C2  C3   SING N N 20 
A1AD0 C2  C7   SING N N 21 
A1AD0 C7  C6   SING N N 22 
A1AD0 C6  C8   SING N N 23 
A1AD0 O3  C8   DOUB N N 24 
A1AD0 C8  N2   SING N N 25 
A1AD0 C13 C12  SING N N 26 
A1AD0 C13 N3   SING N N 27 
A1AD0 C12 C11  SING N N 28 
A1AD0 N2  C9   SING N N 29 
A1AD0 C11 C14  SING N N 30 
A1AD0 C11 C10  SING N N 31 
A1AD0 N3  C14  SING N N 32 
A1AD0 C14 O1   DOUB N N 33 
A1AD0 C9  C10  SING N N 34 
A1AD0 C9  C15  SING N N 35 
A1AD0 C15 O2   SING N N 36 
A1AD0 N3  HN3  SING N N 37 
A1AD0 C4  HC4  SING N N 38 
A1AD0 C5  H5_1 SING N N 39 
A1AD0 C5  H5_2 SING N N 40 
A1AD0 C6  HC6  SING N N 41 
A1AD0 C7  HC7  SING N N 42 
A1AD0 C10 H102 SING N N 43 
A1AD0 C10 H101 SING N N 44 
A1AD0 C13 H131 SING N N 45 
A1AD0 C13 H132 SING N N 46 
A1AD0 C15 HC15 SING N N 47 
A1AD0 C15 H1   SING N N 48 
A1AD0 C21 HC21 SING N N 49 
A1AD0 C22 HC22 SING N N 50 
A1AD0 C24 HC24 SING N N 51 
A1AD0 C1  H1_2 SING N N 52 
A1AD0 C1  H1_1 SING N N 53 
A1AD0 C1  H1_3 SING N N 54 
A1AD0 C3  H3_3 SING N N 55 
A1AD0 C3  H3_2 SING N N 56 
A1AD0 C3  H3_1 SING N N 57 
A1AD0 N2  HN2  SING N N 58 
A1AD0 C9  HC9  SING N N 59 
A1AD0 C11 HC11 SING N N 60 
A1AD0 C12 H122 SING N N 61 
A1AD0 C12 H121 SING N N 62 
A1AD0 O2  HO2  SING N N 63 
A1AD0 C18 H182 SING N N 64 
A1AD0 C18 H181 SING N N 65 
A1AD0 C19 H191 SING N N 66 
A1AD0 C19 H192 SING N N 67 
A1AD0 C23 HC23 SING N N 68 
A1AD0 C25 HC25 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AD0 SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C1(CC1)c1ccccc1"                                                                                                                                             
A1AD0 InChI            InChI                1.06  "InChI=1S/C25H33N3O4/c1-24(2)18-13-28(23(32)25(9-10-25)16-6-4-3-5-7-16)20(19(18)24)22(31)27-17(14-29)12-15-8-11-26-21(15)30/h3-7,15,17-20,29H,8-14H2,1-2H3,(H,26,30)(H,27,31)/t15-,17-,18-,19-,20-/m0/s1" 
A1AD0 InChIKey         InChI                1.06  BJOCSYXAWSVVOR-JBDAPHQKSA-N                                                                                                                                                                               
A1AD0 SMILES_CANONICAL CACTVS               3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)C4(CC4)c5ccccc5"                                                                                                                      
A1AD0 SMILES           CACTVS               3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)C4(CC4)c5ccccc5"                                                                                                                              
A1AD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)C3(CC3)c4ccccc4)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C"                                                                                                                      
A1AD0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C3(CC3)c4ccccc4)C(=O)NC(CC5CCNC5=O)CO)C"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AD0 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide"                          
A1AD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-(1-phenylcyclopropyl)carbonyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AD0 "Create component" 2024-01-29 RCSB 
A1AD0 "Initial release"  2024-04-03 RCSB 
A1AD0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AD0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C15 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
