data_9K0
# 
_chem_comp.id                                    9K0 
_chem_comp.name                                  "(6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H38 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.578 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9K0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ZWE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9K0 O2  O1  O 0 1 N N N N N N 10.395 3.279  26.646 7.012  1.479  1.017  O2  9K0 1  
9K0 C23 C1  C 0 1 N N N N N N 10.416 2.259  27.310 6.902  1.390  -0.188 C23 9K0 2  
9K0 C24 C2  C 0 1 N N N N N N 9.633  2.218  28.605 7.935  1.947  -1.060 C24 9K0 3  
9K0 C25 C3  C 0 1 N N N N N N 9.370  0.763  28.975 8.999  2.554  -0.530 C25 9K0 4  
9K0 C22 C4  C 0 1 N N N N N N 11.215 1.060  26.824 5.703  0.699  -0.786 C22 9K0 5  
9K0 C20 C5  C 0 1 N N N N N N 12.634 1.438  26.426 4.787  0.206  0.336  C20 9K0 6  
9K0 C18 C6  C 0 1 N N R N N N 13.265 2.346  27.466 3.570  -0.496 -0.272 C18 9K0 7  
9K0 C19 C7  C 0 1 N N N N N N 13.849 1.544  28.619 4.024  -1.758 -1.008 C19 9K0 8  
9K0 C16 C8  C 0 1 N N R N N N 14.301 3.276  26.853 2.593  -0.878 0.842  C16 9K0 9  
9K0 C15 C9  C 0 1 N N N N N N 15.113 2.663  25.709 2.065  0.394  1.556  C15 9K0 10 
9K0 C14 C10 C 0 1 N N N N N N 15.468 3.820  24.771 0.516  0.351  1.434  C14 9K0 11 
9K0 C9  C11 C 0 1 N N S N N N 14.926 5.037  25.501 0.232  -1.141 1.250  C9  9K0 12 
9K0 C10 C12 C 0 1 N N R N N N 13.719 4.540  26.247 1.359  -1.546 0.256  C10 9K0 13 
9K0 C17 C13 C 0 1 N N N N N N 12.597 4.206  25.276 1.062  -0.939 -1.116 C17 9K0 14 
9K0 C11 C14 C 0 1 N N N N N N 13.274 5.619  27.214 1.343  -3.052 0.137  C11 9K0 15 
9K0 C12 C15 C 0 1 N N N N N N 12.810 6.829  26.410 0.042  -3.447 -0.581 C12 9K0 16 
9K0 C13 C16 C 0 1 N N N N N N 13.870 7.369  25.447 -1.193 -2.969 0.181  C13 9K0 17 
9K0 C8  C17 C 0 1 N N N N N N 14.585 6.257  24.718 -1.054 -1.503 0.568  C8  9K0 18 
9K0 C7  C18 C 0 1 N N N N N N 14.916 6.373  23.426 -2.004 -0.608 0.319  C7  9K0 19 
9K0 C6  C19 C 0 1 N N N N N N 14.589 7.590  22.692 -3.245 -1.021 -0.355 C6  9K0 20 
9K0 C5  C20 C 0 1 N N N N N N 14.316 7.560  21.385 -4.150 -0.110 -0.696 C5  9K0 21 
9K0 C   C21 C 0 1 N N N N N N 13.986 8.846  20.662 -5.488 -0.530 -1.262 C   9K0 22 
9K0 C4  C22 C 0 1 N N N N N N 14.315 6.247  20.628 -3.863 1.363  -0.519 C4  9K0 23 
9K0 C3  C23 C 0 1 N N R N N N 14.775 6.355  19.171 -4.978 1.980  0.336  C3  9K0 24 
9K0 O   O2  O 0 1 N N N N N N 14.248 5.248  18.440 -4.868 3.404  0.313  O   9K0 25 
9K0 C2  C24 C 0 1 N N N N N N 14.327 7.639  18.539 -6.313 1.561  -0.236 C2  9K0 26 
9K0 C21 C25 C 0 1 N N N N N N 13.682 7.673  17.388 -7.205 2.459  -0.573 C21 9K0 27 
9K0 C1  C26 C 0 1 N N R N N N 14.637 8.896  19.282 -6.598 0.091  -0.405 C1  9K0 28 
9K0 O1  O3  O 0 1 N N N N N N 16.053 8.978  19.427 -6.633 -0.542 0.876  O1  9K0 29 
9K0 H1  H1  H 0 1 N N N N N N 9.313  3.079  29.174 7.838  1.867  -2.132 H1  9K0 30 
9K0 H3  H3  H 0 1 N N N N N N 8.821  0.525  29.874 9.762  2.966  -1.174 H3  9K0 31 
9K0 H4  H4  H 0 1 N N N N N N 9.733  -0.030 28.338 9.097  2.634  0.543  H4  9K0 32 
9K0 H6  H6  H 0 1 N N N N N N 10.706 0.625  25.951 5.159  1.399  -1.419 H6  9K0 33 
9K0 H7  H7  H 0 1 N N N N N N 11.260 0.314  27.631 6.035  -0.150 -1.384 H7  9K0 34 
9K0 H8  H8  H 0 1 N N N N N N 13.238 0.523  26.333 5.331  -0.494 0.969  H8  9K0 35 
9K0 H9  H9  H 0 1 N N N N N N 12.609 1.961  25.459 4.455  1.055  0.934  H9  9K0 36 
9K0 H10 H10 H 0 1 N N N N N N 12.464 2.976  27.879 3.076  0.176  -0.973 H10 9K0 37 
9K0 H11 H11 H 0 1 N N N N N N 14.297 2.230  29.353 3.157  -2.258 -1.440 H11 9K0 38 
9K0 H12 H12 H 0 1 N N N N N N 13.051 0.961  29.102 4.720  -1.486 -1.801 H12 9K0 39 
9K0 H13 H13 H 0 1 N N N N N N 14.621 0.861  28.236 4.518  -2.430 -0.306 H13 9K0 40 
9K0 H14 H14 H 0 1 N N N N N N 15.004 3.571  27.646 3.078  -1.541 1.559  H14 9K0 41 
9K0 H15 H15 H 0 1 N N N N N N 14.513 1.910  25.176 2.359  0.383  2.605  H15 9K0 42 
9K0 H16 H16 H 0 1 N N N N N N 16.028 2.194  26.099 2.456  1.286  1.067  H16 9K0 43 
9K0 H17 H17 H 0 1 N N N N N N 14.981 3.698  23.792 0.045  0.724  2.344  H17 9K0 44 
9K0 H18 H18 H 0 1 N N N N N N 16.557 3.896  24.632 0.182  0.918  0.565  H18 9K0 45 
9K0 H19 H19 H 0 1 N N N N N N 15.677 5.326  26.251 0.338  -1.674 2.195  H19 9K0 46 
9K0 H20 H20 H 0 1 N N N N N N 11.722 3.844  25.836 1.138  0.147  -1.058 H20 9K0 47 
9K0 H21 H21 H 0 1 N N N N N N 12.322 5.108  24.709 1.782  -1.315 -1.844 H21 9K0 48 
9K0 H22 H22 H 0 1 N N N N N N 12.935 3.424  24.580 0.054  -1.216 -1.426 H22 9K0 49 
9K0 H23 H23 H 0 1 N N N N N N 12.445 5.244  27.832 2.203  -3.386 -0.445 H23 9K0 50 
9K0 H24 H24 H 0 1 N N N N N N 14.115 5.905  27.863 1.371  -3.503 1.129  H24 9K0 51 
9K0 H25 H25 H 0 1 N N N N N N 12.539 7.630  27.113 0.037  -3.006 -1.577 H25 9K0 52 
9K0 H26 H26 H 0 1 N N N N N N 11.925 6.539  25.825 0.002  -4.533 -0.673 H26 9K0 53 
9K0 H27 H27 H 0 1 N N N N N N 14.607 7.951  26.019 -2.073 -3.092 -0.449 H27 9K0 54 
9K0 H28 H28 H 0 1 N N N N N N 13.381 8.022  24.709 -1.312 -3.567 1.084  H28 9K0 55 
9K0 H29 H29 H 0 1 N N N N N N 15.427 5.563  22.926 -1.865 0.422  0.610  H29 9K0 56 
9K0 H30 H30 H 0 1 N N N N N N 14.567 8.534  23.216 -3.421 -2.065 -0.571 H30 9K0 57 
9K0 H31 H31 H 0 1 N N N N N N 14.349 9.695  21.259 -5.577 -0.176 -2.289 H31 9K0 58 
9K0 H32 H32 H 0 1 N N N N N N 12.895 8.920  20.545 -5.570 -1.616 -1.241 H32 9K0 59 
9K0 H33 H33 H 0 1 N N N N N N 13.291 5.846  20.636 -2.904 1.492  -0.018 H33 9K0 60 
9K0 H34 H34 H 0 1 N N N N N N 14.986 5.549  21.150 -3.835 1.850  -1.494 H34 9K0 61 
9K0 H35 H35 H 0 1 N N N N N N 15.874 6.319  19.154 -4.891 1.623  1.363  H35 9K0 62 
9K0 H36 H36 H 0 1 N N N N N N 14.534 4.437  18.843 -5.543 3.859  0.835  H36 9K0 63 
9K0 H37 H37 H 0 1 N N N N N N 13.371 8.619  16.971 -6.990 3.509  -0.442 H37 9K0 64 
9K0 H38 H38 H 0 1 N N N N N N 13.465 6.754  16.863 -8.156 2.149  -0.981 H38 9K0 65 
9K0 H39 H39 H 0 1 N N N N N N 14.250 9.763  18.727 -7.559 -0.040 -0.904 H39 9K0 66 
9K0 H40 H40 H 0 1 N N N N N N 16.278 9.772  19.898 -7.308 -0.188 1.471  H40 9K0 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9K0 C21 C2  DOUB N N 1  
9K0 O   C3  SING N N 2  
9K0 C2  C3  SING N N 3  
9K0 C2  C1  SING N N 4  
9K0 C3  C4  SING N N 5  
9K0 C1  O1  SING N N 6  
9K0 C1  C   SING N N 7  
9K0 C4  C5  SING N N 8  
9K0 C   C5  SING N N 9  
9K0 C5  C6  DOUB N N 10 
9K0 C6  C7  SING N N 11 
9K0 C7  C8  DOUB N E 12 
9K0 C8  C13 SING N N 13 
9K0 C8  C9  SING N N 14 
9K0 C14 C9  SING N N 15 
9K0 C14 C15 SING N N 16 
9K0 C17 C10 SING N N 17 
9K0 C13 C12 SING N N 18 
9K0 C9  C10 SING N N 19 
9K0 C15 C16 SING N N 20 
9K0 C10 C16 SING N N 21 
9K0 C10 C11 SING N N 22 
9K0 C12 C11 SING N N 23 
9K0 C20 C22 SING N N 24 
9K0 C20 C18 SING N N 25 
9K0 O2  C23 DOUB N N 26 
9K0 C22 C23 SING N N 27 
9K0 C16 C18 SING N N 28 
9K0 C23 C24 SING N N 29 
9K0 C18 C19 SING N N 30 
9K0 C24 C25 DOUB N N 31 
9K0 C24 H1  SING N N 32 
9K0 C25 H3  SING N N 33 
9K0 C25 H4  SING N N 34 
9K0 C22 H6  SING N N 35 
9K0 C22 H7  SING N N 36 
9K0 C20 H8  SING N N 37 
9K0 C20 H9  SING N N 38 
9K0 C18 H10 SING N N 39 
9K0 C19 H11 SING N N 40 
9K0 C19 H12 SING N N 41 
9K0 C19 H13 SING N N 42 
9K0 C16 H14 SING N N 43 
9K0 C15 H15 SING N N 44 
9K0 C15 H16 SING N N 45 
9K0 C14 H17 SING N N 46 
9K0 C14 H18 SING N N 47 
9K0 C9  H19 SING N N 48 
9K0 C17 H20 SING N N 49 
9K0 C17 H21 SING N N 50 
9K0 C17 H22 SING N N 51 
9K0 C11 H23 SING N N 52 
9K0 C11 H24 SING N N 53 
9K0 C12 H25 SING N N 54 
9K0 C12 H26 SING N N 55 
9K0 C13 H27 SING N N 56 
9K0 C13 H28 SING N N 57 
9K0 C7  H29 SING N N 58 
9K0 C6  H30 SING N N 59 
9K0 C   H31 SING N N 60 
9K0 C   H32 SING N N 61 
9K0 C4  H33 SING N N 62 
9K0 C4  H34 SING N N 63 
9K0 C3  H35 SING N N 64 
9K0 O   H36 SING N N 65 
9K0 C21 H37 SING N N 66 
9K0 C21 H38 SING N N 67 
9K0 C1  H39 SING N N 68 
9K0 O1  H40 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9K0 SMILES           ACDLabs              12.01 "O=C(\C=C)CCC(C)C1CCC2C1(CCCC2=[C@H][C@H]=C3CC(C(\C(C3)O)=C)O)C"                                                                                                                                 
9K0 InChI            InChI                1.03  "InChI=1S/C26H38O3/c1-5-21(27)11-8-17(2)22-12-13-23-20(7-6-14-26(22,23)4)10-9-19-15-24(28)18(3)25(29)16-19/h5,9-10,17,22-25,28-29H,1,3,6-8,11-16H2,2,4H3/b20-10+/t17-,22-,23+,24-,25-,26-/m1/s1" 
9K0 InChIKey         InChI                1.03  XVGVVMUDYCUDFM-VMKNJNNYSA-N                                                                                                                                                                      
9K0 SMILES_CANONICAL CACTVS               3.385 "C[C@H](CCC(=O)C=C)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C/3C[C@@H](O)C(=C)[C@H](O)C/3"                                                                                                               
9K0 SMILES           CACTVS               3.385 "C[CH](CCC(=O)C=C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3"                                                                                                                          
9K0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H](CCC(=O)C=C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C"                                                                                                              
9K0 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(CCC(=O)C=C)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9K0 "SYSTEMATIC NAME" ACDLabs              12.01 "(6R)-6-[(1R,3R,7E,17beta)-1,3-dihydroxy-2-methylidene-9,10-secoestra-5,7-dien-17-yl]hept-1-en-3-one"                                                                                                 
9K0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(6~{R})-6-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[2-[(3~{R},5~{R})-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]hept-1-en-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9K0 "Create component" 2018-05-17 PDBJ 
9K0 "Initial release"  2018-07-18 RCSB 
9K0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9K0 
_pdbx_chem_comp_pcm.modified_residue_id                HIS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
