data_6D0
# 
_chem_comp.id                                    6D0 
_chem_comp.name                                  "5'-{[(3S)-3-amino-3-carboxypropyl](3-bromo-2-oxopropyl)amino}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H24 Br N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-16 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.320 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6D0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ISC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6D0 O1  O    O  0 1 N N N 23.217 14.202 120.005 -5.379 3.242  2.894  O1  6D0 1  
6D0 C1  C    C  0 1 N N N 23.925 15.209 119.936 -5.679 2.602  1.914  C1  6D0 2  
6D0 C2  CA   C  0 1 N N S 23.257 16.530 119.573 -4.839 2.695  0.667  C2  6D0 3  
6D0 N1  N    N  0 1 N N N 21.948 16.585 120.108 -4.040 3.928  0.705  N1  6D0 4  
6D0 C3  CB   C  0 1 N N N 24.120 17.697 120.065 -3.906 1.485  0.588  C3  6D0 5  
6D0 C4  CG   C  0 1 N N N 23.926 18.196 121.480 -3.143 1.514  -0.737 C4  6D0 6  
6D0 N2  NA*  N  0 1 N N N 23.348 19.591 121.608 -2.247 0.352  -0.812 N2  6D0 7  
6D0 C5  C5*  C  0 1 N N N 24.334 20.732 121.260 -1.329 0.468  -1.953 C5  6D0 8  
6D0 C6  C4*  C  0 1 N N R 24.487 20.989 119.852 -0.230 1.479  -1.623 C6  6D0 9  
6D0 O2  O4*  O  0 1 N N N 23.535 21.961 119.364 0.496  1.049  -0.459 O2  6D0 10 
6D0 C7  C1*  C  0 1 N N R 24.297 22.990 118.682 1.867  1.462  -0.641 C7  6D0 11 
6D0 C8  C2*  C  0 1 N N R 25.671 22.956 119.297 2.133  1.182  -2.142 C8  6D0 12 
6D0 O3  O2*  O  0 1 N N N 26.652 23.438 118.432 3.182  2.016  -2.639 O3  6D0 13 
6D0 C9  C3*  C  0 1 N N S 25.888 21.538 119.566 0.774  1.561  -2.789 C9  6D0 14 
6D0 O4  O3*  O  0 1 N N N 26.424 20.864 118.438 0.825  2.887  -3.319 O4  6D0 15 
6D0 N3  N9   N  0 1 Y N N 23.643 24.244 118.839 2.763  0.662  0.199  N3  6D0 16 
6D0 C10 C8   C  0 1 Y N N 23.575 24.980 119.962 2.477  -0.547 0.759  C10 6D0 17 
6D0 N4  N7   N  0 1 Y N N 22.879 26.081 119.744 3.499  -0.973 1.443  N4  6D0 18 
6D0 C11 C5   C  0 1 Y N N 22.469 26.079 118.445 4.503  -0.067 1.365  C11 6D0 19 
6D0 C12 C6   C  0 1 Y N N 21.706 26.947 117.598 5.806  0.012  1.886  C12 6D0 20 
6D0 N5  N6   N  0 1 N N N 21.174 28.154 118.086 6.314  -1.002 2.679  N5  6D0 21 
6D0 C13 C4   C  0 1 Y N N 22.957 24.894 117.868 4.044  0.991  0.561  C13 6D0 22 
6D0 N6  N3   N  0 1 Y N N 22.685 24.625 116.542 4.851  2.020  0.327  N6  6D0 23 
6D0 C14 C2   C  0 1 Y N N 21.968 25.480 115.803 6.063  2.053  0.839  C14 6D0 24 
6D0 N7  N1   N  0 1 Y N N 21.489 26.596 116.291 6.539  1.083  1.598  N7  6D0 25 
6D0 C15 CB*  C  0 1 N N N 22.865 19.774 122.952 -3.014 -0.900 -0.878 C15 6D0 26 
6D0 C16 CG*  C  0 1 N N N 23.907 19.814 124.063 -2.112 -2.059 -0.541 C16 6D0 27 
6D0 C17 CD*  C  0 1 N N N 23.474 19.759 125.544 -2.658 -3.463 -0.541 C17 6D0 28 
6D0 O5  OD1* O  0 1 N N N 25.125 19.881 123.799 -0.951 -1.862 -0.271 O5  6D0 29 
6D0 BR1 BRE* BR 0 0 N N N 24.892 19.085 126.704 -1.227 -4.723 -0.062 BR1 6D0 30 
6D0 O6  OXT  O  0 1 N N N 25.237 15.196 120.165 -6.759 1.805  1.938  O6  6D0 31 
6D0 H1  HA   H  0 1 N N N 23.204 16.591 118.476 -5.488 2.711  -0.209 H1  6D0 32 
6D0 H2  H2   H  0 1 N N N 21.523 17.456 119.862 -4.633 4.744  0.692  H2  6D0 33 
6D0 H3  H    H  0 1 N N N 21.404 15.832 119.737 -3.429 3.937  1.508  H3  6D0 34 
6D0 H5  HB2  H  0 1 N N N 25.171 17.385 119.973 -3.198 1.518  1.416  H5  6D0 35 
6D0 H6  HB3  H  0 1 N N N 23.930 18.547 119.393 -4.494 0.569  0.649  H6  6D0 36 
6D0 H7  HG3  H  0 1 N N N 23.247 17.500 121.994 -3.851 1.481  -1.565 H7  6D0 37 
6D0 H8  HG2  H  0 1 N N N 24.906 18.189 121.979 -2.555 2.430  -0.798 H8  6D0 38 
6D0 H10 H5*1 H  0 1 N N N 25.321 20.468 121.669 -0.880 -0.504 -2.158 H10 6D0 39 
6D0 H11 H5*2 H  0 1 N N N 23.973 21.654 121.739 -1.881 0.805  -2.831 H11 6D0 40 
6D0 H12 H4*1 H  0 1 N N N 24.366 20.049 119.294 -0.670 2.460  -1.444 H12 6D0 41 
6D0 H13 H1*1 H  0 1 N N N 24.380 22.740 117.614 1.985  2.523  -0.422 H13 6D0 42 
6D0 H14 H2*1 H  0 1 N N N 25.663 23.522 120.240 2.363  0.129  -2.307 H14 6D0 43 
6D0 H15 H2*2 H  0 1 N N N 27.499 23.398 118.860 3.385  1.878  -3.574 H15 6D0 44 
6D0 H16 H3*1 H  0 1 N N N 26.526 21.404 120.452 0.511  0.847  -3.569 H16 6D0 45 
6D0 H17 H3*2 H  0 1 N N N 26.552 19.946 118.648 1.485  3.007  -4.015 H17 6D0 46 
6D0 H18 H81  H  0 1 N N N 24.025 24.710 120.906 1.540  -1.074 0.651  H18 6D0 47 
6D0 H19 H62  H  0 1 N N N 20.676 28.619 117.354 5.769  -1.778 2.881  H19 6D0 48 
6D0 H20 H61  H  0 1 N N N 20.550 27.961 118.844 7.214  -0.936 3.032  H20 6D0 49 
6D0 H21 H21  H  0 1 N N N 21.778 25.241 114.767 6.693  2.905  0.630  H21 6D0 50 
6D0 H22 HB*2 H  0 1 N N N 22.314 20.726 122.980 -3.836 -0.860 -0.164 H22 6D0 51 
6D0 H23 HB*1 H  0 1 N N N 22.176 18.945 123.173 -3.412 -1.030 -1.884 H23 6D0 52 
6D0 H24 HD*2 H  0 1 N N N 23.201 20.773 125.871 -3.467 -3.539 0.186  H24 6D0 53 
6D0 H25 HD*1 H  0 1 N N N 22.600 19.098 125.633 -3.039 -3.705 -1.533 H25 6D0 54 
6D0 H26 H4   H  0 1 N N N 25.513 14.313 120.380 -7.264 1.775  2.762  H26 6D0 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6D0 C14 N7  DOUB Y N 1  
6D0 C14 N6  SING Y N 2  
6D0 N7  C12 SING Y N 3  
6D0 N6  C13 DOUB Y N 4  
6D0 C12 N5  SING N N 5  
6D0 C12 C11 DOUB Y N 6  
6D0 C13 C11 SING Y N 7  
6D0 C13 N3  SING Y N 8  
6D0 O3  C8  SING N N 9  
6D0 O4  C9  SING N N 10 
6D0 C11 N4  SING Y N 11 
6D0 C7  N3  SING N N 12 
6D0 C7  C8  SING N N 13 
6D0 C7  O2  SING N N 14 
6D0 N3  C10 SING Y N 15 
6D0 C8  C9  SING N N 16 
6D0 O2  C6  SING N N 17 
6D0 C9  C6  SING N N 18 
6D0 C2  C1  SING N N 19 
6D0 C2  C3  SING N N 20 
6D0 C2  N1  SING N N 21 
6D0 N4  C10 DOUB Y N 22 
6D0 C6  C5  SING N N 23 
6D0 C1  O1  DOUB N N 24 
6D0 C1  O6  SING N N 25 
6D0 C3  C4  SING N N 26 
6D0 C5  N2  SING N N 27 
6D0 C4  N2  SING N N 28 
6D0 N2  C15 SING N N 29 
6D0 C15 C16 SING N N 30 
6D0 O5  C16 DOUB N N 31 
6D0 C16 C17 SING N N 32 
6D0 C17 BR1 SING N N 33 
6D0 C2  H1  SING N N 34 
6D0 N1  H2  SING N N 35 
6D0 N1  H3  SING N N 36 
6D0 C3  H5  SING N N 37 
6D0 C3  H6  SING N N 38 
6D0 C4  H7  SING N N 39 
6D0 C4  H8  SING N N 40 
6D0 C5  H10 SING N N 41 
6D0 C5  H11 SING N N 42 
6D0 C6  H12 SING N N 43 
6D0 C7  H13 SING N N 44 
6D0 C8  H14 SING N N 45 
6D0 O3  H15 SING N N 46 
6D0 C9  H16 SING N N 47 
6D0 O4  H17 SING N N 48 
6D0 C10 H18 SING N N 49 
6D0 N5  H19 SING N N 50 
6D0 N5  H20 SING N N 51 
6D0 C14 H21 SING N N 52 
6D0 C15 H22 SING N N 53 
6D0 C15 H23 SING N N 54 
6D0 C17 H24 SING N N 55 
6D0 C17 H25 SING N N 56 
6D0 O6  H26 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6D0 SMILES           ACDLabs              12.01 "O=C(O)C(CCN(CC(CBr)=O)CC3OC(n1cnc2c(N)ncnc12)C(C3O)O)N"                                                                                                                                                  
6D0 InChI            InChI                1.03  "InChI=1S/C17H24BrN7O6/c18-3-8(26)4-24(2-1-9(19)17(29)30)5-10-12(27)13(28)16(31-10)25-7-23-11-14(20)21-6-22-15(11)25/h6-7,9-10,12-13,16,27-28H,1-5,19H2,(H,29,30)(H2,20,21,22)/t9-,10+,12+,13+,16+/m0/s1" 
6D0 InChIKey         InChI                1.03  DHRFKRQEQCVPMB-UOYPZJKHSA-N                                                                                                                                                                               
6D0 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)CC(=O)CBr)C(O)=O"                                                                                                                            
6D0 SMILES           CACTVS               3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)CC(=O)CBr)C(O)=O"                                                                                                                                   
6D0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@@H](C(=O)O)N)CC(=O)CBr)O)O)N"                                                                                                                     
6D0 SMILES           "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC(C(=O)O)N)CC(=O)CBr)O)O)N"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6D0 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(3S)-3-amino-3-carboxypropyl](3-bromo-2-oxopropyl)amino}-5'-deoxyadenosine"                                                                                  
6D0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-bromanyl-2-oxidanylidene-propyl)amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6D0 "Create component" 2016-03-16 EBI  
6D0 "Initial release"  2017-03-15 RCSB 
# 
