data_5I0
# 
_chem_comp.id                                    5I0 
_chem_comp.name                                  "[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H44 N7 O13" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "hydrated form of streptomycin" 
_chem_comp.pdbx_formal_charge                    3 
_chem_comp.pdbx_initial_date                     2021-07-09 
_chem_comp.pdbx_modified_date                    2022-11-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.613 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5I0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P2E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5I0 C11  C1  C 0 1 N N R 194.104 212.271 211.776 4.607  -0.124 -0.202 C11  5I0 1  
5I0 C12  C2  C 0 1 N N R 193.048 207.097 210.913 -0.621 0.589  -0.267 C12  5I0 2  
5I0 C13  C3  C 0 1 N N S 194.470 204.965 209.017 -3.455 -0.784 0.621  C13  5I0 3  
5I0 NB1  N1  N 0 1 N N N 195.877 214.714 211.881 6.889  1.414  -0.508 NB1  5I0 4  
5I0 CG2  C4  C 0 1 N N N 193.574 204.403 213.392 -1.829 3.263  1.678  CG2  5I0 5  
5I0 CD1  C5  C 0 1 N N N 195.914 209.348 208.425 2.040  -2.344 2.833  CD1  5I0 6  
5I0 NE1  N2  N 0 1 N N N 197.034 209.980 208.709 3.025  -1.801 3.547  NE1  5I0 7  
5I0 CH2  C6  C 0 1 N N N 190.801 206.315 213.631 -1.010 3.983  -1.541 CH2  5I0 8  
5I0 C21  C7  C 0 1 N N R 194.204 211.614 210.402 3.797  -1.288 0.373  C21  5I0 9  
5I0 C22  C8  C 0 1 N N R 193.592 205.686 211.151 -1.883 1.022  0.512  C22  5I0 10 
5I0 C23  C9  C 0 1 N N S 194.565 203.615 208.262 -4.885 -1.139 0.207  C23  5I0 11 
5I0 C31  C10 C 0 1 N N S 194.644 210.160 210.553 2.528  -0.747 1.035  C31  5I0 12 
5I0 C32  C11 C 0 1 N N R 192.746 205.154 212.336 -1.931 2.555  0.325  C32  5I0 13 
5I0 C33  C12 C 0 1 N N S 193.220 203.284 207.594 -4.920 -1.412 -1.300 C33  5I0 14 
5I0 C41  C13 C 0 1 N N R 193.657 209.400 211.434 1.686  -0.005 -0.005 C41  5I0 15 
5I0 C42  C14 C 0 1 N N S 192.081 206.454 212.842 -0.693 2.867  -0.544 C42  5I0 16 
5I0 C43  C15 C 0 1 N N R 192.900 204.444 206.662 -3.925 -2.529 -1.629 C43  5I0 17 
5I0 C51  C16 C 0 1 N N R 193.527 210.065 212.797 2.496  1.158  -0.580 C51  5I0 18 
5I0 C53  C17 C 0 1 N N S 192.855 205.751 207.447 -2.532 -2.120 -1.144 C53  5I0 19 
5I0 C61  C18 C 0 1 N N S 193.098 211.518 212.642 3.765  0.618  -1.242 C61  5I0 20 
5I0 C63  C19 C 0 1 N N N 192.588 206.948 206.565 -1.543 -3.257 -1.415 C63  5I0 21 
5I0 CA1  C20 C 0 1 N N N 194.577 214.782 211.676 6.922  0.162  -0.962 CA1  5I0 22 
5I0 CI3  C21 C 0 1 N N N 196.195 201.774 208.816 -5.833 0.169  1.980  CI3  5I0 23 
5I0 N11  N3  N 0 1 N N N 193.727 213.668 211.646 5.822  -0.641 -0.836 N11  5I0 24 
5I0 N23  N4  N 1 1 N N N 194.955 202.498 209.188 -5.781 -0.019 0.524  N23  5I0 25 
5I0 N31  N5  N 0 1 N N N 194.774 209.526 209.252 1.752  -1.862 1.586  N31  5I0 26 
5I0 NC1  N6  N 1 1 N N N 193.991 215.946 211.448 8.027  -0.308 -1.538 NC1  5I0 27 
5I0 NF1  N7  N 1 1 N N N 195.834 208.561 207.366 1.335  -3.357 3.334  NF1  5I0 28 
5I0 O13  O1  O 0 1 N N N 193.467 204.839 209.994 -3.049 0.413  -0.046 O13  5I0 29 
5I0 O21  O2  O 0 1 N N N 195.135 212.328 209.597 4.583  -1.980 1.345  O21  5I0 30 
5I0 O32  O3  O 0 1 N N N 191.742 204.259 211.855 -3.129 2.940  -0.353 O32  5I0 31 
5I0 O33  O4  O 0 1 N N N 193.473 202.099 206.849 -6.236 -1.814 -1.683 O33  5I0 32 
5I0 O41  O5  O 0 1 N N N 193.846 207.993 211.647 0.500  0.499  0.613  O41  5I0 33 
5I0 O42  O6  O 0 1 N N N 191.839 207.201 211.634 -0.412 1.634  -1.242 O42  5I0 34 
5I0 O43  O7  O 0 1 N N N 191.637 204.240 206.037 -3.896 -2.742 -3.042 O43  5I0 35 
5I0 O51  O8  O 0 1 N N N 192.579 209.368 213.598 1.709  1.851  -1.552 O51  5I0 36 
5I0 O53  O9  O 0 1 N N N 194.120 205.977 208.091 -2.576 -1.852 0.259  O53  5I0 37 
5I0 O61  O10 O 0 1 N N N 193.017 212.140 213.920 4.521  1.705  -1.780 O61  5I0 38 
5I0 O63  O11 O 0 1 N N N 192.461 208.140 207.325 -0.223 -2.832 -1.070 O63  5I0 39 
5I0 OG2A O12 O 0 0 N N N 194.577 205.284 213.803 -1.875 4.678  1.480  OG2A 5I0 40 
5I0 OG2B O13 O 0 0 N N N 192.765 203.994 214.456 -2.920 2.862  2.509  OG2B 5I0 41 
5I0 H11  H1  H 0 1 N N N 195.090 212.207 212.260 4.879  0.561  0.600  H11  5I0 42 
5I0 H12  H2  H 0 1 N N N 192.960 207.337 209.843 -0.792 -0.366 -0.765 H12  5I0 43 
5I0 H13  H3  H 0 1 N N N 195.444 205.182 209.481 -3.416 -0.631 1.699  H13  5I0 44 
5I0 HB11 H4  H 0 0 N N N 196.314 213.827 212.028 6.084  1.756  -0.088 HB11 5I0 45 
5I0 HB12 H5  H 0 0 N N N 196.426 215.550 211.890 7.669  1.983  -0.597 HB12 5I0 46 
5I0 HE12 H6  H 0 0 N N N 197.080 210.583 209.505 3.538  -1.064 3.182  HE12 5I0 47 
5I0 HE11 H7  H 0 0 N N N 197.839 209.857 208.128 3.229  -2.144 4.431  HE11 5I0 48 
5I0 HH23 H8  H 0 0 N N N 190.997 205.744 214.550 -1.299 4.884  -0.999 HH23 5I0 49 
5I0 HH22 H9  H 0 0 N N N 190.422 207.314 213.894 -0.127 4.191  -2.146 HH22 5I0 50 
5I0 HH21 H10 H 0 0 N N N 190.052 205.787 213.024 -1.829 3.671  -2.189 HH21 5I0 51 
5I0 H21  H11 H 0 1 N N N 193.210 211.632 209.932 3.524  -1.973 -0.430 H21  5I0 52 
5I0 H22  H12 H 0 1 N N N 194.644 205.753 211.466 -1.786 0.769  1.567  H22  5I0 53 
5I0 H23  H13 H 0 1 N N N 195.330 203.711 207.477 -5.210 -2.029 0.746  H23  5I0 54 
5I0 H31  H14 H 0 1 N N N 195.623 210.152 211.054 2.800  -0.062 1.838  H31  5I0 55 
5I0 H33  H15 H 0 1 N N N 192.430 203.151 208.347 -4.643 -0.507 -1.841 H33  5I0 56 
5I0 H41  H16 H 0 1 N N N 192.676 209.517 210.951 1.413  -0.691 -0.808 H41  5I0 57 
5I0 H42  H17 H 0 1 N N N 192.814 206.991 213.461 0.151  3.149  0.085  H42  5I0 58 
5I0 H43  H18 H 0 1 N N N 193.691 204.516 205.901 -4.230 -3.448 -1.127 H43  5I0 59 
5I0 H51  H19 H 0 1 N N N 194.512 210.045 213.287 2.768  1.843  0.222  H51  5I0 60 
5I0 H53  H20 H 0 1 N N N 192.058 205.681 208.202 -2.210 -1.224 -1.676 H53  5I0 61 
5I0 H61  H21 H 0 1 N N N 192.117 211.545 212.146 3.493  -0.067 -2.045 H61  5I0 62 
5I0 H631 H22 H 0 0 N N N 191.655 206.779 206.007 -1.814 -4.124 -0.814 H631 5I0 63 
5I0 H632 H23 H 0 0 N N N 193.422 207.063 205.857 -1.575 -3.522 -2.471 H632 5I0 64 
5I0 HI33 H24 H 0 0 N N N 196.392 200.981 209.552 -4.833 0.386  2.354  HI33 5I0 65 
5I0 HI31 H25 H 0 0 N N N 196.073 201.326 207.819 -6.498 1.001  2.215  HI31 5I0 66 
5I0 HI32 H26 H 0 0 N N N 197.040 202.478 208.801 -6.208 -0.740 2.450  HI32 5I0 67 
5I0 HN11 H27 H 0 0 N N N 192.753 213.856 211.521 5.846  -1.553 -1.167 HN11 5I0 68 
5I0 HN24 H28 H 0 0 N N N 195.084 202.884 210.101 -5.433 0.823  0.088  HN24 5I0 69 
5I0 HN23 H29 H 0 0 N N N 194.205 201.837 209.209 -6.707 -0.220 0.177  HN23 5I0 70 
5I0 HN31 H30 H 0 0 N N N 193.923 209.155 208.879 1.035  -2.257 1.067  HN31 5I0 71 
5I0 HC12 H31 H 0 0 N N N 194.535 216.785 211.430 8.052  -1.220 -1.869 HC12 5I0 72 
5I0 HF11 H32 H 0 0 N N N 194.975 208.096 207.152 1.539  -3.700 4.219  HF11 5I0 73 
5I0 HO21 H33 H 0 0 N N N 194.852 213.231 209.510 5.405  -2.350 0.994  HO21 5I0 74 
5I0 HO32 H34 H 0 0 N N N 191.228 203.937 212.586 -3.211 3.893  -0.496 HO32 5I0 75 
5I0 HO33 H35 H 0 0 N N N 193.671 201.386 207.445 -6.331 -2.003 -2.627 HO33 5I0 76 
5I0 HO43 H36 H 0 0 N N N 191.654 203.428 205.545 -3.282 -3.435 -3.322 HO43 5I0 77 
5I0 HO51 H37 H 0 0 N N N 192.507 209.792 214.445 2.161  2.603  -1.959 HO51 5I0 78 
5I0 HO61 H38 H 0 0 N N N 192.391 211.673 214.461 4.048  2.221  -2.447 HO61 5I0 79 
5I0 HO63 H39 H 0 0 N N N 192.294 208.871 206.742 0.457  -3.503 -1.216 HO63 5I0 80 
5I0 HG2A H40 H 0 0 N N N 195.119 204.863 214.460 -1.815 5.191  2.297  HG2A 5I0 81 
5I0 HG2B H41 H 0 0 N N N 193.293 203.533 215.097 -3.790 3.071  2.144  HG2B 5I0 82 
5I0 HG21 H42 H 0 0 N N N 194.025 203.524 212.907 -0.888 2.995  2.158  HG21 5I0 83 
5I0 HC11 H43 H 0 0 N N N 193.004 215.987 211.294 8.807  0.261  -1.628 HC11 5I0 84 
5I0 HF12 H44 H 0 0 N N N 196.633 208.431 206.779 0.618  -3.753 2.815  HF12 5I0 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5I0 O43  C43  SING N N 1  
5I0 C63  O63  SING N N 2  
5I0 C63  C53  SING N N 3  
5I0 C43  C53  SING N N 4  
5I0 C43  C33  SING N N 5  
5I0 O33  C33  SING N N 6  
5I0 NF1  CD1  DOUB N N 7  
5I0 C53  O53  SING N N 8  
5I0 C33  C23  SING N N 9  
5I0 O53  C13  SING N N 10 
5I0 C23  C13  SING N N 11 
5I0 C23  N23  SING N N 12 
5I0 CD1  NE1  SING N N 13 
5I0 CD1  N31  SING N N 14 
5I0 CI3  N23  SING N N 15 
5I0 C13  O13  SING N N 16 
5I0 N31  C31  SING N N 17 
5I0 O21  C21  SING N N 18 
5I0 O13  C22  SING N N 19 
5I0 C21  C31  SING N N 20 
5I0 C21  C11  SING N N 21 
5I0 C31  C41  SING N N 22 
5I0 C12  C22  SING N N 23 
5I0 C12  O42  SING N N 24 
5I0 C12  O41  SING N N 25 
5I0 C22  C32  SING N N 26 
5I0 C41  O41  SING N N 27 
5I0 C41  C51  SING N N 28 
5I0 NC1  CA1  DOUB N N 29 
5I0 O42  C42  SING N N 30 
5I0 N11  CA1  SING N N 31 
5I0 N11  C11  SING N N 32 
5I0 CA1  NB1  SING N N 33 
5I0 C11  C61  SING N N 34 
5I0 O32  C32  SING N N 35 
5I0 C32  C42  SING N N 36 
5I0 C32  CG2  SING N N 37 
5I0 C61  C51  SING N N 38 
5I0 C61  O61  SING N N 39 
5I0 C51  O51  SING N N 40 
5I0 C42  CH2  SING N N 41 
5I0 CG2  OG2A SING N N 42 
5I0 CG2  OG2B SING N N 43 
5I0 C11  H11  SING N N 44 
5I0 C12  H12  SING N N 45 
5I0 C13  H13  SING N N 46 
5I0 NB1  HB11 SING N N 47 
5I0 NB1  HB12 SING N N 48 
5I0 NE1  HE12 SING N N 49 
5I0 NE1  HE11 SING N N 50 
5I0 CH2  HH23 SING N N 51 
5I0 CH2  HH22 SING N N 52 
5I0 CH2  HH21 SING N N 53 
5I0 C21  H21  SING N N 54 
5I0 C22  H22  SING N N 55 
5I0 C23  H23  SING N N 56 
5I0 C31  H31  SING N N 57 
5I0 C33  H33  SING N N 58 
5I0 C41  H41  SING N N 59 
5I0 C42  H42  SING N N 60 
5I0 C43  H43  SING N N 61 
5I0 C51  H51  SING N N 62 
5I0 C53  H53  SING N N 63 
5I0 C61  H61  SING N N 64 
5I0 C63  H631 SING N N 65 
5I0 C63  H632 SING N N 66 
5I0 CI3  HI33 SING N N 67 
5I0 CI3  HI31 SING N N 68 
5I0 CI3  HI32 SING N N 69 
5I0 N11  HN11 SING N N 70 
5I0 N23  HN24 SING N N 71 
5I0 N23  HN23 SING N N 72 
5I0 N31  HN31 SING N N 73 
5I0 NC1  HC12 SING N N 74 
5I0 NF1  HF11 SING N N 75 
5I0 O21  HO21 SING N N 76 
5I0 O32  HO32 SING N N 77 
5I0 O33  HO33 SING N N 78 
5I0 O43  HO43 SING N N 79 
5I0 O51  HO51 SING N N 80 
5I0 O61  HO61 SING N N 81 
5I0 O63  HO63 SING N N 82 
5I0 OG2A HG2A SING N N 83 
5I0 OG2B HG2B SING N N 84 
5I0 CG2  HG21 SING N N 85 
5I0 NC1  HC11 SING N N 86 
5I0 NF1  HF12 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5I0 InChI            InChI                1.03  "InChI=1S/C21H41N7O13/c1-4-21(37,18(35)36)15(41-16-8(26-2)12(33)9(30)5(3-29)39-16)17(38-4)40-14-7(28-20(24)25)10(31)6(27-19(22)23)11(32)13(14)34/h4-18,26,29-37H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/p+3/t4-,5-,6+,7-,8-,9-,10+,11-,12-,13+,14+,15-,16-,17-,21+/m0/s1" 
5I0 InChIKey         InChI                1.03  ATLHDHNZEMANQF-UQHZJGBMSA-Q                                                                                                                                                                                                                                             
5I0 SMILES_CANONICAL CACTVS               3.385 "C[NH2+][C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]2[C@@H](O[C@@H](C)[C@]2(O)C(O)O)O[C@H]3[C@H](O)[C@@H](O)[C@H](NC(N)=[NH2+])[C@@H](O)[C@@H]3NC(N)=[NH2+]"                                                                                                           
5I0 SMILES           CACTVS               3.385 "C[NH2+][CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O[CH](C)[C]2(O)C(O)O)O[CH]3[CH](O)[CH](O)[CH](NC(N)=[NH2+])[CH](O)[CH]3NC(N)=[NH2+]"                                                                                                                                
5I0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@]([C@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H]([C@H]([C@@H]([C@H]2O)O)NC(=[NH2+])N)O)NC(=[NH2+])N)O[C@H]3[C@H]([C@@H]([C@H]([C@@H](O3)CO)O)O)[NH2+]C)(C(O)O)O"                                                                                                      
5I0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(O1)OC2C(C(C(C(C2O)O)NC(=[NH2+])N)O)NC(=[NH2+])N)OC3C(C(C(C(O3)CO)O)O)[NH2+]C)(C(O)O)O"                                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           5I0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5I0 "Create component" 2021-07-09 PDBE 
5I0 "Initial release"  2022-07-27 RCSB 
5I0 "Modify synonyms"  2022-11-23 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      5I0 
_pdbx_chem_comp_synonyms.name         "hydrated form of streptomycin" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
