data_4C0
#

_chem_comp.id                                   4C0
_chem_comp.name                                 "3-(1H-benzimidazol-2-yl)-N-(3-phenylpropanoyl)-D-alanine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H19 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(R)-3-(1H-Benzoimidazol-2-yl)-2-(3-phenyl-propionylamino)-propionic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-22
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       337.372
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4C0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3KAD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4C0  C1    C1    C  0  1  Y  N  N  31.466  -15.067   -0.188  -3.268   4.061  -0.011  C1    4C0   1  
4C0  C2    C2    C  0  1  Y  N  N  31.941  -15.366   -1.460  -4.550   3.723  -0.421  C2    4C0   2  
4C0  C3    C3    C  0  1  Y  N  N  31.236  -16.240   -2.279  -4.949   2.403  -0.449  C3    4C0   3  
4C0  C4    C4    C  0  1  Y  N  N  30.285  -15.643    0.266  -2.381   3.095   0.371  C4    4C0   4  
4C0  C5    C5    C  0  1  Y  N  N  29.581  -16.517   -0.554  -2.765   1.752   0.356  C5    4C0   5  
4C0  C6    C6    C  0  1  Y  N  N  30.055  -16.815   -1.823  -4.062   1.408  -0.064  C6    4C0   6  
4C0  N7    N7    N  0  1  Y  N  N  29.185  -17.677   -2.388  -4.138   0.032   0.023  N7    4C0   7  
4C0  C8    C8    C  0  1  Y  N  N  28.191  -17.916   -1.503  -2.933  -0.412   0.471  C8    4C0   8  
4C0  N9    N9    N  0  1  Y  N  N  28.434  -17.206   -0.379  -2.131   0.593   0.669  N9    4C0   9  
4C0  C10   C10   C  0  1  N  N  N  27.008  -18.826   -1.731  -2.582  -1.858   0.711  C10   4C0  10  
4C0  C11   C11   C  0  1  N  N  R  25.853  -18.021   -2.313  -1.323  -2.215  -0.082  C11   4C0  11  
4C0  N12   N12   N  0  1  N  N  N  26.137  -17.671   -3.692  -0.186  -1.449   0.434  N12   4C0  12  
4C0  C13   C13   C  0  1  N  N  N  26.437  -16.425   -4.045   0.871  -1.192  -0.362  C13   4C0  13  
4C0  O14   O14   O  0  1  N  N  N  26.470  -15.499   -3.251   0.880  -1.595  -1.506  O14   4C0  14  
4C0  C15   C15   C  0  1  N  N  N  26.742  -16.193   -5.505   2.040  -0.403   0.169  C15   4C0  15  
4C0  C16   C16   C  0  1  N  N  N  28.057  -15.433   -5.635   3.095  -0.254  -0.928  C16   4C0  16  
4C0  C17   C17   C  0  1  Y  N  N  28.596  -15.595   -7.037   4.265   0.534  -0.397  C17   4C0  17  
4C0  C18   C18   C  0  1  Y  N  N  28.201  -16.679   -7.813   5.321  -0.120   0.209  C18   4C0  18  
4C0  C19   C19   C  0  1  Y  N  N  28.697  -16.828   -9.103   6.394   0.603   0.696  C19   4C0  19  
4C0  C20   C20   C  0  1  Y  N  N  29.588  -15.893   -9.617   6.410   1.980   0.578  C20   4C0  20  
4C0  C21   C21   C  0  1  Y  N  N  29.983  -14.809   -8.841   5.353   2.634  -0.028  C21   4C0  21  
4C0  C22   C22   C  0  1  Y  N  N  29.487  -14.660   -7.551   4.284   1.911  -0.521  C22   4C0  22  
4C0  C23   C23   C  0  1  N  N  N  24.583  -18.811   -2.194  -1.041  -3.689   0.059  C23   4C0  23  
4C0  O24   O24   O  0  1  N  N  N  24.112  -19.341   -3.223   0.002  -4.061   0.542  O24   4C0  24  
4C0  O25   O25   O  0  1  N  N  N  24.044  -18.908   -1.071  -1.949  -4.588  -0.351  O25   4C0  25  
4C0  H1    H1    H  0  1  N  N  N  32.014  -14.387    0.447  -2.967   5.098   0.002  H1    4C0  26  
4C0  H2    H2    H  0  1  N  N  N  32.859  -14.919   -1.812  -5.239   4.498  -0.720  H2    4C0  27  
4C0  H3    H3    H  0  1  N  N  N  31.605  -16.472   -3.267  -5.948   2.146  -0.768  H3    4C0  28  
4C0  H4    H4    H  0  1  N  N  N  29.915  -15.412    1.254  -1.384   3.369   0.684  H4    4C0  29  
4C0  H10   H10   H  0  1  N  N  N  27.289  -19.624   -2.434  -2.398  -2.016   1.774  H10   4C0  30  
4C0  H10A  H10A  H  0  0  N  N  N  26.699  -19.272   -0.774  -3.407  -2.491   0.387  H10A  4C0  31  
4C0  H11   H11   H  0  1  N  N  N  25.729  -17.084   -1.750  -1.476  -1.974  -1.134  H11   4C0  32  
4C0  HN12  HN12  H  0  0  N  N  N  26.106  -18.383   -4.393  -0.194  -1.127   1.349  HN12  4C0  33  
4C0  H15   H15   H  0  1  N  N  N  26.826  -17.161   -6.020   1.700   0.584   0.483  H15   4C0  34  
4C0  H15A  H15A  H  0  0  N  N  N  25.932  -15.604   -5.960   2.474  -0.926   1.022  H15A  4C0  35  
4C0  H16   H16   H  0  1  N  N  N  27.886  -14.366   -5.429   3.435  -1.242  -1.242  H16   4C0  36  
4C0  H16A  H16A  H  0  0  N  N  N  28.785  -15.833   -4.914   2.662   0.269  -1.781  H16A  4C0  37  
4C0  H18   H18   H  0  1  N  N  N  27.509  -17.405   -7.413   5.308  -1.196   0.301  H18   4C0  38  
4C0  H19   H19   H  0  1  N  N  N  28.390  -17.670   -9.706   7.219   0.092   1.170  H19   4C0  39  
4C0  H20   H20   H  0  1  N  N  N  29.973  -16.009  -10.619   7.247   2.545   0.960  H20   4C0  40  
4C0  H21   H21   H  0  1  N  N  N  30.675  -14.083   -9.241   5.366   3.710  -0.120  H21   4C0  41  
4C0  H22   H22   H  0  1  N  N  N  29.794  -13.818   -6.948   3.458   2.421  -0.995  H22   4C0  42  
4C0  HO25  HO25  H  0  0  N  N  N  23.254  -19.431   -1.143  -1.724  -5.522  -0.240  HO25  4C0  43  
4C0  HN7   HN7   H  0  1  N  N  N  29.262  -18.071   -3.304  -4.909  -0.515  -0.194  HN7   4C0  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4C0  C2   C1    DOUB  Y  N   1  
4C0  C1   C4    SING  Y  N   2  
4C0  C1   H1    SING  N  N   3  
4C0  C3   C2    SING  Y  N   4  
4C0  C2   H2    SING  N  N   5  
4C0  C3   C6    DOUB  Y  N   6  
4C0  C3   H3    SING  N  N   7  
4C0  C5   C4    DOUB  Y  N   8  
4C0  C4   H4    SING  N  N   9  
4C0  C6   C5    SING  Y  N  10  
4C0  C5   N9    SING  Y  N  11  
4C0  N7   C6    SING  Y  N  12  
4C0  N7   C8    SING  Y  N  13  
4C0  C10  C8    SING  N  N  14  
4C0  C8   N9    DOUB  Y  N  15  
4C0  C11  C10   SING  N  N  16  
4C0  C10  H10   SING  N  N  17  
4C0  C10  H10A  SING  N  N  18  
4C0  N12  C11   SING  N  N  19  
4C0  C11  C23   SING  N  N  20  
4C0  C11  H11   SING  N  N  21  
4C0  C13  N12   SING  N  N  22  
4C0  N12  HN12  SING  N  N  23  
4C0  C15  C13   SING  N  N  24  
4C0  C13  O14   DOUB  N  N  25  
4C0  C16  C15   SING  N  N  26  
4C0  C15  H15   SING  N  N  27  
4C0  C15  H15A  SING  N  N  28  
4C0  C17  C16   SING  N  N  29  
4C0  C16  H16   SING  N  N  30  
4C0  C16  H16A  SING  N  N  31  
4C0  C18  C17   DOUB  Y  N  32  
4C0  C22  C17   SING  Y  N  33  
4C0  C19  C18   SING  Y  N  34  
4C0  C18  H18   SING  N  N  35  
4C0  C20  C19   DOUB  Y  N  36  
4C0  C19  H19   SING  N  N  37  
4C0  C20  C21   SING  Y  N  38  
4C0  C20  H20   SING  N  N  39  
4C0  C21  C22   DOUB  Y  N  40  
4C0  C21  H21   SING  N  N  41  
4C0  C22  H22   SING  N  N  42  
4C0  O24  C23   DOUB  N  N  43  
4C0  C23  O25   SING  N  N  44  
4C0  O25  HO25  SING  N  N  45  
4C0  N7   HN7   SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4C0  SMILES            ACDLabs               11.02  "O=C(O)C(NC(=O)CCc1ccccc1)Cc3nc2ccccc2n3"  
4C0  SMILES_CANONICAL  CACTVS                3.352  "OC(=O)[C@@H](Cc1[nH]c2ccccc2n1)NC(=O)CCc3ccccc3"  
4C0  SMILES            CACTVS                3.352  "OC(=O)[CH](Cc1[nH]c2ccccc2n1)NC(=O)CCc3ccccc3"  
4C0  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1ccc(cc1)CCC(=O)N[C@H](Cc2[nH]c3ccccc3n2)C(=O)O"  
4C0  SMILES            "OpenEye OEToolkits"  1.7.0  "c1ccc(cc1)CCC(=O)NC(Cc2[nH]c3ccccc3n2)C(=O)O"  
4C0  InChI             InChI                 1.03   "InChI=1S/C19H19N3O3/c23-18(11-10-13-6-2-1-3-7-13)22-16(19(24)25)12-17-20-14-8-4-5-9-15(14)21-17/h1-9,16H,10-12H2,(H,20,21)(H,22,23)(H,24,25)/t16-/m1/s1"  
4C0  InChIKey          InChI                 1.03   AZXJPZVGZBWZMA-MRXNPFEDSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4C0  "SYSTEMATIC NAME"  ACDLabs               11.02  "3-(1H-benzimidazol-2-yl)-N-(3-phenylpropanoyl)-D-alanine"  
4C0  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R)-3-(1H-benzimidazol-2-yl)-2-(3-phenylpropanoylamino)propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4C0  "Create component"      2009-10-22  PDBJ  
4C0  "Modify aromatic_flag"  2011-06-04  RCSB  
4C0  "Modify descriptor"     2011-06-04  RCSB  
4C0  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4C0
_pdbx_chem_comp_synonyms.name        "(R)-3-(1H-Benzoimidazol-2-yl)-2-(3-phenyl-propionylamino)-propionic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
