data_1U0
# 
_chem_comp.id                                    1U0 
_chem_comp.name                                  "2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N3 O9 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-06-05 
_chem_comp.pdbx_modified_date                    2013-08-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        483.370 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1U0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4KXY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1U0 O3B   O3B   O 0 1 N N N 35.644 0.240  20.671 -8.021 0.834  -0.658 O3B   1U0 1  
1U0 PB    PB    P 0 1 N N N 35.183 1.123  19.530 -7.008 -0.132 0.137  PB    1U0 2  
1U0 O1B   O1B   O 0 1 N N N 35.067 0.359  18.279 -7.037 0.202  1.579  O1B   1U0 3  
1U0 O2B   O2B   O 0 1 N N N 35.996 2.405  19.510 -7.456 -1.665 -0.067 O2B   1U0 4  
1U0 O3A   O3A   O 0 1 N N N 33.579 1.506  19.804 -5.515 0.072  -0.431 O3A   1U0 5  
1U0 PA    PA    P 0 1 N N N 32.581 1.432  21.028 -4.051 -0.333 0.102  PA    1U0 6  
1U0 O1A   O1A   O 0 1 N N N 31.223 1.705  20.556 -3.982 -0.121 1.565  O1A   1U0 7  
1U0 O2A   O2A   O 0 1 N N N 32.842 0.136  21.770 -3.768 -1.883 -0.229 O2A   1U0 8  
1U0 O7    O7    O 0 1 N N N 33.086 2.549  22.031 -2.944 0.582  -0.625 O7    1U0 9  
1U0 C7    C7    C 0 1 N N N 32.826 3.947  21.667 -1.555 0.537  -0.291 C7    1U0 10 
1U0 C6    C6    C 0 1 N N N 33.475 4.784  22.775 -0.787 1.528  -1.168 C6    1U0 11 
1U0 C5    C5    C 0 1 Y N N 33.243 6.259  22.456 0.678  1.480  -0.815 C5    1U0 12 
1U0 C4    C4    C 0 1 Y N N 32.542 7.144  23.204 1.579  0.677  -1.380 C4    1U0 13 
1U0 CM4   CM4   C 0 1 N N N 31.922 6.994  24.549 1.223  -0.303 -2.468 CM4   1U0 14 
1U0 S1    S1    S 0 1 Y N N 33.895 6.891  20.987 1.461  2.482  0.401  S1    1U0 15 
1U0 C2    C2    C 0 1 Y N N 33.318 8.544  21.397 3.013  1.725  0.068  C2    1U0 16 
1U0 C8    C8    C 0 1 N N R 33.882 9.678  20.524 4.309  2.061  0.759  C8    1U0 17 
1U0 O9    O9    O 0 1 N N N 33.137 9.618  19.096 4.087  2.159  2.167  O9    1U0 18 
1U0 C3    C3    C 0 1 Y N N 32.598 8.511  22.532 2.868  0.811  -0.892 C3    1U0 19 
1U0 "C7'" "C7'" C 0 1 N N N 31.834 9.761  23.095 4.019  -0.016 -1.405 "C7'" 1U0 20 
1U0 "C5'" "C5'" C 0 1 Y N N 30.339 9.561  22.902 4.165  -1.254 -0.558 "C5'" 1U0 21 
1U0 "C6'" "C6'" C 0 1 Y N N 29.340 9.424  23.865 3.246  -1.548 0.430  "C6'" 1U0 22 
1U0 "N1'" "N1'" N 0 1 Y N N 28.049 9.399  23.639 3.406  -2.646 1.156  "N1'" 1U0 23 
1U0 "C2'" "C2'" C 0 1 Y N N 27.553 9.476  22.375 4.424  -3.455 0.947  "C2'" 1U0 24 
1U0 CM2   CM2   C 0 1 N N N 26.099 9.469  22.152 4.563  -4.692 1.798  CM2   1U0 25 
1U0 "N3'" "N3'" N 0 1 Y N N 28.468 9.556  21.329 5.324  -3.214 0.015  "N3'" 1U0 26 
1U0 "C4'" "C4'" C 0 1 Y N N 29.771 9.551  21.590 5.229  -2.136 -0.756 "C4'" 1U0 27 
1U0 "N4'" "N4'" N 0 1 N N N 30.539 9.787  20.418 6.177  -1.885 -1.735 "N4'" 1U0 28 
1U0 C9    C9    C 0 1 N N N 35.221 9.516  20.005 4.836  3.398  0.232  C9    1U0 29 
1U0 O10   O10   O 0 1 N N N 36.036 9.270  21.183 6.121  3.660  0.800  O10   1U0 30 
1U0 H1    H1    H 0 1 N N N 35.771 -0.647 20.355 -8.941 0.764  -0.367 H1    1U0 31 
1U0 H2    H2    H 0 1 N N N 36.341 2.548  18.637 -7.460 -1.953 -0.990 H2    1U0 32 
1U0 H3    H3    H 0 1 N N N 32.035 -0.361 21.834 -3.797 -2.095 -1.172 H3    1U0 33 
1U0 H4    H4    H 0 1 N N N 33.279 4.181  20.692 -1.425 0.804  0.758  H4    1U0 34 
1U0 H5    H5    H 0 1 N N N 31.744 4.139  21.624 -1.173 -0.470 -0.460 H5    1U0 35 
1U0 H6    H6    H 0 1 N N N 33.018 4.536  23.745 -0.916 1.261  -2.217 H6    1U0 36 
1U0 H7    H7    H 0 1 N N N 34.555 4.577  22.814 -1.169 2.535  -0.999 H7    1U0 37 
1U0 H8    H8    H 0 1 N N N 32.675 7.196  25.325 1.259  0.199  -3.435 H8    1U0 38 
1U0 H9    H9    H 0 1 N N N 31.090 7.707  24.651 1.934  -1.129 -2.461 H9    1U0 39 
1U0 H10   H10   H 0 1 N N N 31.542 5.968  24.665 0.217  -0.688 -2.296 H10   1U0 40 
1U0 H11   H11   H 0 1 N N N 33.725 10.660 20.995 5.041  1.278  0.560  H11   1U0 41 
1U0 H12   H12   H 0 1 N N N 32.200 9.711  19.223 3.446  2.838  2.418  H12   1U0 42 
1U0 H13   H13   H 0 1 N N N 32.055 9.875  24.167 3.828  -0.304 -2.438 H13   1U0 43 
1U0 H14   H14   H 0 1 N N N 32.157 10.664 22.556 4.937  0.569  -1.354 H14   1U0 44 
1U0 H15   H15   H 0 1 N N N 29.659 9.330  24.892 2.408  -0.891 0.610  H15   1U0 45 
1U0 H16   H16   H 0 1 N N N 25.893 9.535  21.074 4.036  -5.520 1.324  H16   1U0 46 
1U0 H17   H17   H 0 1 N N N 25.671 8.537  22.551 5.618  -4.944 1.902  H17   1U0 47 
1U0 H18   H18   H 0 1 N N N 25.645 10.330 22.665 4.135  -4.505 2.783  H18   1U0 48 
1U0 H19   H19   H 0 1 N N N 29.927 9.908  19.637 6.960  -2.454 -1.809 H19   1U0 49 
1U0 H20   H20   H 0 1 N N N 31.090 10.613 20.541 6.058  -1.142 -2.347 H20   1U0 50 
1U0 H21   H21   H 0 1 N N N 35.270 8.663  19.312 4.921  3.352  -0.854 H21   1U0 51 
1U0 H22   H22   H 0 1 N N N 35.551 10.428 19.487 4.147  4.195  0.509  H22   1U0 52 
1U0 H23   H23   H 0 1 N N N 36.942 9.151  20.923 6.516  4.493  0.509  H23   1U0 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1U0 O1B   PB    DOUB N N 1  
1U0 O9    C8    SING N N 2  
1U0 O2B   PB    SING N N 3  
1U0 PB    O3A   SING N N 4  
1U0 PB    O3B   SING N N 5  
1U0 O3A   PA    SING N N 6  
1U0 C9    C8    SING N N 7  
1U0 C9    O10   SING N N 8  
1U0 "N4'" "C4'" SING N N 9  
1U0 C8    C2    SING N N 10 
1U0 O1A   PA    DOUB N N 11 
1U0 S1    C2    SING Y N 12 
1U0 S1    C5    SING Y N 13 
1U0 PA    O2A   SING N N 14 
1U0 PA    O7    SING N N 15 
1U0 "N3'" "C4'" DOUB Y N 16 
1U0 "N3'" "C2'" SING Y N 17 
1U0 C2    C3    DOUB Y N 18 
1U0 "C4'" "C5'" SING Y N 19 
1U0 C7    O7    SING N N 20 
1U0 C7    C6    SING N N 21 
1U0 CM2   "C2'" SING N N 22 
1U0 "C2'" "N1'" DOUB Y N 23 
1U0 C5    C6    SING N N 24 
1U0 C5    C4    DOUB Y N 25 
1U0 C3    "C7'" SING N N 26 
1U0 C3    C4    SING Y N 27 
1U0 "C5'" "C7'" SING N N 28 
1U0 "C5'" "C6'" DOUB Y N 29 
1U0 C4    CM4   SING N N 30 
1U0 "N1'" "C6'" SING Y N 31 
1U0 O3B   H1    SING N N 32 
1U0 O2B   H2    SING N N 33 
1U0 O2A   H3    SING N N 34 
1U0 C7    H4    SING N N 35 
1U0 C7    H5    SING N N 36 
1U0 C6    H6    SING N N 37 
1U0 C6    H7    SING N N 38 
1U0 CM4   H8    SING N N 39 
1U0 CM4   H9    SING N N 40 
1U0 CM4   H10   SING N N 41 
1U0 C8    H11   SING N N 42 
1U0 O9    H12   SING N N 43 
1U0 "C7'" H13   SING N N 44 
1U0 "C7'" H14   SING N N 45 
1U0 "C6'" H15   SING N N 46 
1U0 CM2   H16   SING N N 47 
1U0 CM2   H17   SING N N 48 
1U0 CM2   H18   SING N N 49 
1U0 "N4'" H19   SING N N 50 
1U0 "N4'" H20   SING N N 51 
1U0 C9    H21   SING N N 52 
1U0 C9    H22   SING N N 53 
1U0 O10   H23   SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1U0 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCCc1sc(c(c1C)Cc2cnc(nc2N)C)C(O)CO"                                                                                                                                    
1U0 InChI            InChI                1.03  "InChI=1S/C15H23N3O9P2S/c1-8-11(5-10-6-17-9(2)18-15(10)16)14(12(20)7-19)30-13(8)3-4-26-29(24,25)27-28(21,22)23/h6,12,19-20H,3-5,7H2,1-2H3,(H,24,25)(H2,16,17,18)(H2,21,22,23)/t12-/m1/s1" 
1U0 InChIKey         InChI                1.03  AZNRIYLXMXTRTE-GFCCVEGCSA-N                                                                                                                                                               
1U0 SMILES_CANONICAL CACTVS               3.370 "Cc1ncc(Cc2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C@H](O)CO)c(N)n1"                                                                                                                          
1U0 SMILES           CACTVS               3.370 "Cc1ncc(Cc2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[CH](O)CO)c(N)n1"                                                                                                                           
1U0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(sc(c1Cc2cnc(nc2N)C)[C@@H](CO)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                               
1U0 SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1c(sc(c1Cc2cnc(nc2N)C)C(CO)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1U0 "SYSTEMATIC NAME" ACDLabs              12.01 "2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate"             
1U0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[4-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-5-[(1R)-1,2-bis(oxidanyl)ethyl]-3-methyl-thiophen-2-yl]ethyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1U0 "Create component" 2013-06-05 RCSB 
1U0 "Initial release"  2013-08-21 RCSB 
# 
