data_1S0
# 
_chem_comp.id                                    1S0 
_chem_comp.name                                  "4-amino-1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H16 N3 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-05-14 
_chem_comp.pdbx_modified_date                    2014-07-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.157 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1S0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4K4G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1S0 OAE OAE O 0 1 N N N -33.248 17.108 12.294 -3.934 -3.838 -0.883 OAE 1S0 1  
1S0 OAG OAG O 0 1 N N N -32.142 22.012 8.847  2.484  -0.944 -0.174 OAG 1S0 2  
1S0 OAH OAH O 0 1 N N N -27.217 16.636 12.559 -6.610 0.344  -1.172 OAH 1S0 3  
1S0 OAJ OAJ O 0 1 N N N -33.874 20.153 8.692  1.884  -3.442 0.387  OAJ 1S0 4  
1S0 OAK OAK O 0 1 N N N -33.221 24.282 8.863  4.303  0.899  -0.628 OAK 1S0 5  
1S0 OAL OAL O 0 1 N N N -31.923 23.501 10.829 5.034  -1.581 -0.146 OAL 1S0 6  
1S0 OAO OAO O 0 1 N N N -33.562 24.875 6.496  5.643  2.368  0.926  OAO 1S0 7  
1S0 OAI OAI O 0 1 N N N -31.526 19.973 7.545  1.321  -1.565 1.979  OAI 1S0 8  
1S0 PAA PAA P 0 1 N N N -32.395 20.415 8.694  1.413  -1.910 0.542  PAA 1S0 9  
1S0 PAB PAB P 0 1 N N N -32.935 23.013 9.816  3.961  -0.434 0.209  PAB 1S0 10 
1S0 OAM OAM O 0 1 N N N -34.221 22.456 10.359 4.020  -0.135 1.658  OAM 1S0 11 
1S0 PAC PAC P 0 1 N N N -34.330 24.420 7.692  5.431  2.041  -0.501 PAC 1S0 12 
1S0 OAP OAP O 0 1 N N N -34.990 23.056 7.600  6.809  1.507  -1.140 OAP 1S0 13 
1S0 OAN OAN O 0 1 N N N -35.268 25.465 8.238  4.949  3.360  -1.289 OAN 1S0 14 
1S0 OAF OAF O 0 1 N N N -31.726 19.907 10.054 -0.029 -1.719 -0.148 OAF 1S0 15 
1S0 CAX CAX C 0 1 N N N -32.338 20.029 11.325 -1.212 -2.361 0.331  CAX 1S0 16 
1S0 CAU CAU C 0 1 N N S -31.731 18.972 12.225 -2.399 -1.966 -0.550 CAU 1S0 17 
1S0 CAT CAT C 0 1 N N R -32.033 17.559 11.733 -3.682 -2.685 -0.079 CAT 1S0 18 
1S0 CAV CAV C 0 1 N N N -30.840 16.758 12.184 -4.796 -1.633 -0.276 CAV 1S0 19 
1S0 CAW CAW C 0 1 N N S -29.720 17.778 12.273 -4.054 -0.402 -0.844 CAW 1S0 20 
1S0 OAD OAD O 0 1 N N N -30.311 19.075 12.247 -2.688 -0.558 -0.402 OAD 1S0 21 
1S0 NAQ NAQ N 0 1 N N N -28.792 17.653 11.152 -4.629 0.833  -0.306 NAQ 1S0 22 
1S0 CAY CAY C 0 1 N N N -29.141 18.073 9.923  -3.847 1.689  0.409  CAY 1S0 23 
1S0 CBA CBA C 0 1 N N N -28.260 17.935 8.858  -4.388 2.831  0.896  CBA 1S0 24 
1S0 CBB CBB C 0 1 N N N -27.004 17.371 9.112  -5.749 3.101  0.649  CBB 1S0 25 
1S0 NAS NAS N 0 1 N N N -26.087 17.218 8.134  -6.325 4.253  1.132  NAS 1S0 26 
1S0 NAR NAR N 0 1 N N N -26.700 16.958 10.352 -6.472 2.238  -0.053 NAR 1S0 27 
1S0 CAZ CAZ C 0 1 N N N -27.587 17.094 11.344 -5.925 1.119  -0.525 CAZ 1S0 28 
1S0 H1  H1  H 0 1 N N N -33.963 17.647 11.976 -4.760 -4.294 -0.669 H1  1S0 29 
1S0 H2  H2  H 0 1 N N N -34.114 19.697 7.894  1.966  -3.737 -0.530 H2  1S0 30 
1S0 H3  H3  H 0 1 N N N -32.267 23.377 11.706 5.051  -1.827 -1.081 H3  1S0 31 
1S0 H4  H4  H 0 1 N N N -34.808 22.672 6.750  6.744  1.273  -2.076 H4  1S0 32 
1S0 H5  H5  H 0 1 N N N -35.206 26.253 7.711  5.581  4.091  -1.255 H5  1S0 33 
1S0 H6  H6  H 0 1 N N N -32.147 21.030 11.739 -1.079 -3.442 0.296  H6  1S0 34 
1S0 H7  H7  H 0 1 N N N -33.423 19.869 11.237 -1.403 -2.051 1.358  H7  1S0 35 
1S0 H8  H8  H 0 1 N N N -32.138 19.090 13.240 -2.191 -2.202 -1.594 H8  1S0 36 
1S0 H9  H9  H 0 1 N N N -32.083 17.559 10.634 -3.600 -2.961 0.972  H9  1S0 37 
1S0 H10 H10 H 0 1 N N N -31.027 16.298 13.165 -5.540 -1.992 -0.988 H10 1S0 38 
1S0 H11 H11 H 0 1 N N N -30.597 15.974 11.452 -5.265 -1.389 0.677  H11 1S0 39 
1S0 H12 H12 H 0 1 N N N -29.178 17.629 13.219 -4.103 -0.400 -1.933 H12 1S0 40 
1S0 H13 H13 H 0 1 N N N -30.111 18.520 9.763  -2.806 1.460  0.585  H13 1S0 41 
1S0 H14 H14 H 0 1 N N N -28.536 18.253 7.863  -3.786 3.523  1.466  H14 1S0 42 
1S0 H15 H15 H 0 1 N N N -25.201 16.803 8.340  -5.794 4.883  1.645  H15 1S0 43 
1S0 H16 H16 H 0 1 N N N -26.294 17.519 7.203  -7.262 4.437  0.960  H16 1S0 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1S0 OAO PAC DOUB N N 1  
1S0 OAI PAA DOUB N N 2  
1S0 OAP PAC SING N N 3  
1S0 PAC OAN SING N N 4  
1S0 PAC OAK SING N N 5  
1S0 NAS CBB SING N N 6  
1S0 OAJ PAA SING N N 7  
1S0 PAA OAG SING N N 8  
1S0 PAA OAF SING N N 9  
1S0 OAG PAB SING N N 10 
1S0 CBA CBB SING N N 11 
1S0 CBA CAY DOUB N N 12 
1S0 OAK PAB SING N N 13 
1S0 CBB NAR DOUB N N 14 
1S0 PAB OAM DOUB N N 15 
1S0 PAB OAL SING N N 16 
1S0 CAY NAQ SING N N 17 
1S0 OAF CAX SING N N 18 
1S0 NAR CAZ SING N N 19 
1S0 NAQ CAZ SING N N 20 
1S0 NAQ CAW SING N N 21 
1S0 CAX CAU SING N N 22 
1S0 CAZ OAH DOUB N N 23 
1S0 CAT CAV SING N N 24 
1S0 CAT CAU SING N N 25 
1S0 CAT OAE SING N N 26 
1S0 CAV CAW SING N N 27 
1S0 CAU OAD SING N N 28 
1S0 OAD CAW SING N N 29 
1S0 OAE H1  SING N N 30 
1S0 OAJ H2  SING N N 31 
1S0 OAL H3  SING N N 32 
1S0 OAP H4  SING N N 33 
1S0 OAN H5  SING N N 34 
1S0 CAX H6  SING N N 35 
1S0 CAX H7  SING N N 36 
1S0 CAU H8  SING N N 37 
1S0 CAT H9  SING N N 38 
1S0 CAV H10 SING N N 39 
1S0 CAV H11 SING N N 40 
1S0 CAW H12 SING N N 41 
1S0 CAY H13 SING N N 42 
1S0 CBA H14 SING N N 43 
1S0 NAS H15 SING N N 44 
1S0 NAS H16 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1S0 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O"                                                                                                                                
1S0 InChI            InChI                1.03  "InChI=1S/C9H16N3O13P3/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(23-8)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H,20,21)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m1/s1" 
1S0 InChIKey         InChI                1.03  RGWHQCVHVJXOKC-CHKWXVPMSA-N                                                                                                                                                               
1S0 SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1)[C@@H]2C[C@@H](O)[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                          
1S0 SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                               
1S0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H](O[C@@H]1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                  
1S0 SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1S0 "SYSTEMATIC NAME" ACDLabs              12.01 "4-amino-1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one" 
1S0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2S,3R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1S0 "Create component" 2013-05-14 RCSB 
1S0 "Initial release"  2014-07-16 RCSB 
# 
