data_PRDCC_900073
# 
_chem_comp.id                                    PRD_900073 
_chem_comp.name                                  
;(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{S})-4-fluoranyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)oxan-
 3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
;
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C12 H21 F O10" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        344.288 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900073 "F3'" F1  F 0 1 N N N 8.639  13.288 12.499 1.703  -2.078 1.258  TUP 1 F3  polymer 1 1 1  ? ? ? 
PRD_900073 "C3'" C1  C 0 1 N N R 9.805  13.171 11.777 2.157  -1.133 0.331  TUP 1 C3  polymer 1 1 2  ? ? ? 
PRD_900073 "C2'" C2  C 0 1 N N S 10.298 11.731 11.940 3.475  -0.526 0.821  TUP 1 C2  polymer 1 1 3  ? ? ? 
PRD_900073 "O2'" O1  O 0 1 N N N 9.316  10.822 11.414 4.474  -1.547 0.891  TUP 1 O2  polymer 1 1 4  ? ? ? 
PRD_900073 "C1'" C3  C 0 1 N N S 11.657 11.533 11.259 3.923  0.561  -0.160 TUP 1 C1  polymer 1 1 5  ? ? ? 
PRD_900073 "O1'" O2  O 0 1 N N N 11.550 11.692 9.844  4.164  -0.023 -1.441 TUP 1 O1  polymer 1 1 6  ? ? ? 
PRD_900073 "O5'" O3  O 0 1 N N N 12.590 12.474 11.803 2.898  1.551  -0.272 TUP 1 O5  polymer 1 1 7  ? ? ? 
PRD_900073 "C5'" C4  C 0 1 N N R 12.246 13.860 11.623 1.656  1.050  -0.770 TUP 1 C5  polymer 1 1 8  ? ? ? 
PRD_900073 "C6'" C5  C 0 1 N N N 13.379 14.716 12.200 0.649  2.197  -0.874 TUP 1 C6  polymer 1 1 9  ? ? ? 
PRD_900073 "O6'" O4  O 0 1 N N N 13.444 14.639 13.638 1.103  3.144  -1.843 TUP 1 O6  polymer 1 1 10 ? ? ? 
PRD_900073 "C4'" C6  C 0 1 N N R 10.868 14.187 12.231 1.117  -0.017 0.185  TUP 1 C4  polymer 1 1 11 ? ? ? 
PRD_900073 O1    O5  O 0 1 N N N 10.502 15.542 11.870 -0.095 -0.561 -0.340 TUP 1 O4  polymer 1 1 12 ? ? ? 
PRD_900073 C1    C7  C 0 1 N N R 9.722  16.247 12.859 -0.950 -1.138 0.648  GLC 2 C1  polymer 1 1 13 ? ? ? 
PRD_900073 C2    C8  C 0 1 N N R 9.180  17.555 12.285 -2.048 -1.954 -0.039 GLC 2 C2  polymer 1 1 14 ? ? ? 
PRD_900073 C3    C12 C 0 1 N N S 10.351 18.501 12.028 -2.902 -1.020 -0.904 GLC 2 C3  polymer 1 1 15 ? ? ? 
PRD_900073 C4    C11 C 0 1 N N S 11.085 18.791 13.333 -3.472 0.095  -0.021 GLC 2 C4  polymer 1 1 16 ? ? ? 
PRD_900073 C5    C9  C 0 1 N N R 11.531 17.458 13.968 -2.319 0.831  0.666  GLC 2 C5  polymer 1 1 17 ? ? ? 
PRD_900073 C6    C10 C 0 1 N N N 12.138 17.628 15.350 -2.883 1.908  1.595  GLC 2 C6  polymer 1 1 18 ? ? ? 
PRD_900073 O2    O6  O 0 1 N N N 8.436  17.315 11.080 -1.452 -2.956 -0.865 GLC 2 O2  polymer 1 1 19 ? ? ? 
PRD_900073 O3    O10 O 0 1 N N N 9.842  19.673 11.413 -3.974 -1.760 -1.492 GLC 2 O3  polymer 1 1 20 ? ? ? 
PRD_900073 O4    O9  O 0 1 N N N 12.241 19.579 13.046 -4.210 1.013  -0.830 GLC 2 O4  polymer 1 1 21 ? ? ? 
PRD_900073 O5    O7  O 0 1 N N N 10.453 16.515 14.071 -1.547 -0.099 1.428  GLC 2 O5  polymer 1 1 22 ? ? ? 
PRD_900073 O6    O8  O 0 1 N N N 11.136 18.103 16.239 -1.808 2.671  2.148  GLC 2 O6  polymer 1 1 23 ? ? ? 
PRD_900073 H1    H1  H 0 1 N N N 9.607  13.344 10.709 2.314  -1.615 -0.634 TUP 1 H3  polymer 1 1 24 ? ? ? 
PRD_900073 H2    H2  H 0 1 N N N 10.428 11.538 13.015 3.330  -0.089 1.808  TUP 1 H2  polymer 1 1 25 ? ? ? 
PRD_900073 H3    H3  H 0 1 N N N 9.624  9.929  11.516 5.336  -1.233 1.194  TUP 1 HO2 polymer 1 1 26 ? ? ? 
PRD_900073 H4    H4  H 0 1 N N N 12.001 10.513 11.484 4.839  1.026  0.206  TUP 1 H1  polymer 1 1 27 ? ? ? 
PRD_900073 H5    H5  H 0 1 N N N 12.403 11.565 9.445  4.452  0.610  -2.114 TUP 1 HO1 polymer 1 1 28 ? ? ? 
PRD_900073 H6    H6  H 0 1 N N N 12.188 14.071 10.545 1.811  0.612  -1.756 TUP 1 H5  polymer 1 1 29 ? ? ? 
PRD_900073 H7    H7  H 0 1 N N N 14.335 14.365 11.783 -0.321 1.803  -1.178 TUP 1 H61 polymer 1 1 30 ? ? ? 
PRD_900073 H8    H8  H 0 1 N N N 13.214 15.764 11.909 0.554  2.687  0.095  TUP 1 H62 polymer 1 1 31 ? ? ? 
PRD_900073 H9    H9  H 0 1 N N N 14.157 15.182 13.953 0.512  3.900  -1.962 TUP 1 HO6 polymer 1 1 32 ? ? ? 
PRD_900073 H10   H10 H 0 1 N N N 10.956 14.118 13.325 0.925  0.430  1.160  TUP 1 H4  polymer 1 1 33 ? ? ? 
PRD_900073 H11   H11 H 0 1 N N N 8.853  15.623 13.115 -0.366 -1.790 1.298  GLC 2 H1  polymer 1 1 34 ? ? ? 
PRD_900073 H12   H12 H 0 1 N N N 8.522  18.016 13.037 -2.676 -2.428 0.715  GLC 2 H2  polymer 1 1 35 ? ? ? 
PRD_900073 H20   H20 H 0 1 N N N 11.052 18.000 11.344 -2.284 -0.584 -1.689 GLC 2 H3  polymer 1 1 36 ? ? ? 
PRD_900073 H18   H18 H 0 1 N N N 10.412 19.317 14.026 -4.129 -0.336 0.733  GLC 2 H4  polymer 1 1 37 ? ? ? 
PRD_900073 H14   H14 H 0 1 N N N 12.308 17.031 13.316 -1.684 1.298  -0.088 GLC 2 H5  polymer 1 1 38 ? ? ? 
PRD_900073 H15   H15 H 0 1 N N N 12.519 16.660 15.707 -3.542 2.567  1.030  GLC 2 H61 polymer 1 1 39 ? ? ? 
PRD_900073 H16   H16 H 0 1 N N N 12.964 18.353 15.304 -3.444 1.435  2.401  GLC 2 H62 polymer 1 1 40 ? ? ? 
PRD_900073 H13   H13 H 0 1 N N N 8.108  18.139 10.740 -0.893 -3.581 -0.383 GLC 2 HO2 polymer 1 1 41 ? ? ? 
PRD_900073 H21   H21 H 0 1 N N N 10.555 20.277 11.243 -3.684 -2.487 -2.059 GLC 2 HO3 polymer 1 1 42 ? ? ? 
PRD_900073 H19   H19 H 0 1 N N N 11.974 20.402 12.654 -4.957 0.614  -1.296 GLC 2 HO4 polymer 1 1 43 ? ? ? 
PRD_900073 H17   H17 H 0 1 N N N 11.508 18.212 17.106 -2.092 3.373  2.748  GLC 2 HO6 polymer 1 1 44 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900073 "F3'" "C3'" SING N N 1  
PRD_900073 "C3'" "C2'" SING N N 2  
PRD_900073 "C3'" "C4'" SING N N 3  
PRD_900073 "C2'" "C1'" SING N N 4  
PRD_900073 "C2'" "O2'" SING N N 5  
PRD_900073 "C1'" "O1'" SING N N 6  
PRD_900073 "C1'" "O5'" SING N N 7  
PRD_900073 "O5'" "C5'" SING N N 8  
PRD_900073 "C5'" "C4'" SING N N 9  
PRD_900073 "C5'" "C6'" SING N N 10 
PRD_900073 "C6'" "O6'" SING N N 11 
PRD_900073 "C4'" O1    SING N N 12 
PRD_900073 O1    C1    SING N N 13 
PRD_900073 C1    C2    SING N N 14 
PRD_900073 C1    O5    SING N N 15 
PRD_900073 C2    O2    SING N N 16 
PRD_900073 C2    C3    SING N N 17 
PRD_900073 O5    C5    SING N N 18 
PRD_900073 C5    C4    SING N N 19 
PRD_900073 C5    C6    SING N N 20 
PRD_900073 C6    O6    SING N N 21 
PRD_900073 C4    O4    SING N N 22 
PRD_900073 C4    C3    SING N N 23 
PRD_900073 C3    O3    SING N N 24 
PRD_900073 "C3'" H1    SING N N 25 
PRD_900073 "C2'" H2    SING N N 26 
PRD_900073 "O2'" H3    SING N N 27 
PRD_900073 "C1'" H4    SING N N 28 
PRD_900073 "O1'" H5    SING N N 29 
PRD_900073 "C5'" H6    SING N N 30 
PRD_900073 "C6'" H7    SING N N 31 
PRD_900073 "C6'" H8    SING N N 32 
PRD_900073 "O6'" H9    SING N N 33 
PRD_900073 "C4'" H10   SING N N 34 
PRD_900073 C1    H11   SING N N 35 
PRD_900073 C2    H12   SING N N 36 
PRD_900073 O2    H13   SING N N 37 
PRD_900073 C5    H14   SING N N 38 
PRD_900073 C6    H15   SING N N 39 
PRD_900073 C6    H16   SING N N 40 
PRD_900073 O6    H17   SING N N 41 
PRD_900073 C4    H18   SING N N 42 
PRD_900073 O4    H19   SING N N 43 
PRD_900073 C3    H20   SING N N 44 
PRD_900073 O3    H21   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900073 InChI            InChI                1.06  "InChI=1S/C12H21FO10/c13-5-7(17)11(20)21-4(2-15)10(5)23-12-9(19)8(18)6(16)3(1-14)22-12/h3-12,14-20H,1-2H2/t3-,4-,5-,6-,7-,8+,9-,10-,11+,12-/m1/s1" 
PRD_900073 InChIKey         InChI                1.06  VTFMBBVCESUVNC-MZIZBZDASA-N                                                                                                                        
PRD_900073 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](O[C@H]2[C@H](F)[C@@H](O)[C@@H](O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"                                                             
PRD_900073 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[CH]2[CH](F)[CH](O)[CH](O)O[CH]2CO)[CH](O)[CH](O)[CH]1O"                                                                            
PRD_900073 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2F)O)O)CO)O)O)O)O"                                                         
PRD_900073 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OC2C(OC(C(C2F)O)O)CO)O)O)O)O"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           PRD_900073 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{S})-4-fluoranyl-2-(hydroxymethyl)-5,6-bis(oxidanyl)oxan-
 3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
;
# 
